Guy Baele

16 papers B 1Journal 13Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
HIPSTR: highest independent posterior subtree reconstruction in TreeAnnotator X.
Bioinform.
Guy Baele, Luiz Max Carvalho, Marius Brusselmans, Gytis Dudas, Xiang Ji, John T. McCrone, Philippe Lemey, Marc A. Suchard, Andrew Rambaut
2024 J jnl
Many-core algorithms for high-dimensional gradients on phylogenetic trees.
Bioinform.
Karthik Gangavarapu, Xiang Ji, Guy Baele, Mathieu Fourment, Philippe Lemey, Frederick A. Matsen IV, Marc A. Suchard
2024 J jnl
spread.gl: visualizing pathogen dispersal in a high-performance browser application.
Bioinform.
Yimin Li, Nena Bollen, Samuel L. Hong, Marius Brusselmans, Fabiana Gambaro, Joon Klaps, Marc A. Suchard, Andrew Rambaut, Philippe Lemey, Simon Dellicour, Guy Baele
2021 J jnl
Massive Parallelization Boosts Big Bayesian Multidimensional Scaling.
J. Comput. Graph. Stat.
Andrew J. Holbrook, Philippe Lemey, Guy Baele, Simon Dellicour, Dirk Brockmann, Andrew Rambaut, Marc A. Suchard
2021 J jnl
Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk.
PLoS Comput. Biol.
Antanas Kalkauskas, Umberto Perron, Yuxuan Sun, Nick Goldman, Guy Baele, Stéphane Guindon, Nicola De Maio
2020 J jnl
Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference - Application to H5N1 spread in the Mekong region.
Bioinform.
Simon Dellicour, Philippe Lemey, Jean Artois, Tommy T. Lam, Alice Fusaro, Isabella Monne, Giovanni Cattoli, Dmitry Kuznetsov, Ioannis Xenarios, Gwenaelle Dauphin, Wantanee Kalpravidh, Sophie von Dobschütz, Filip Claes, Scott H. Newman, Marc A. Suchard, Guy Baele, Marius Gilbert
2017 J jnl
Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST.
Bioinform.
Guy Baele, Philippe Lemey, Andrew Rambaut, Marc A. Suchard
2017 J jnl
PhyloGeoTool: interactively exploring large phylogenies in an epidemiological context.
Bioinform.
Pieter Libin, Ewout Vanden Eynden, Francesca Incardona, Ann Nowé, Antonia Bezenchek, EucoHIV Study Group, Anders Sönnerborg, Anne-Mieke Vandamme, Kristof Theys, Guy Baele
2017 J jnl
Virus genomes reveal factors that spread and sustained the Ebola epidemic.
Nat.
Gytis Dudas, Luiz Max Carvalho, Trevor Bedford, Andrew J. Tatem, Guy Baele, Nuno R. Faria, Daniel J. Park, Jason T. Ladner, Armando Arias, Danny Asogun, Filip Bielejec, Sarah L. Caddy, Matthew Cotten, Jonathan D'Ambrozio, Simon Dellicour, Antonino Di Caro, Joseph W. Diclaro, Sophie Duraffour, Michael J. Elmore, Lawrence S. Fakoli, Ousmane Faye, Merle L. Gilbert, Sahr M. Gevao, Stephen Gire, Adrianne Gladden-Young, Andreas Gnirke, Augustine Goba, Donald S. Grant, Bart L. Haagmans, Julian A. Hiscox, Umaru Jah, Jeffrey R. Kugelman, Di Liu, Jia Lu, Christine M. Malboeuf, Suzanne Mate, David A. Matthews, Christian B. Matranga, Luke W. Meredith, James Qu, Joshua Quick, Suzan D. Pas, My V. T. Phan, Georgios Pollakis, Chantal B. Reusken, Mariano Sanchez-Lockhart, Stephen F. Schaffner, John S. Schieffelin, Rachel S. G. Sealfon, Etienne Simon-Loriere, Saskia L. Smits, Kilian Stoecker, Lucy Thorne, Ekaete Alice Tobin, Mohamed A. Vandi, Simon J. Watson, Kendra West, Shannon Whitmer, Michael R. Wiley, Sarah M. Winnicki, Shirlee Wohl, Roman Wölfel, Nathan L. Yozwiak, Kristian G. Andersen, Sylvia O. Blyden, Fatorma Bolay, Miles W. Carroll, Bernice Dahn, Boubacar Diallo, Pierre Formenty, Christophe Fraser, George F. Gao, Robert F. Garry, Ian Goodfellow, Stephan Günther, Christian T. Happi, Edward C. Holmes, Brima Kargbo, Sakoba Keïta, Paul Kellam, Marion Koopmans, Jens H. Kuhn, Nicholas J. Loman, N'Faly Magassouba, Dhamari Naidoo, Stuart T. Nichol, Tolbert Nyenswah, Gustavo F. Palacios, Oliver G. Pybus, Pardis C. Sabeti, Amadou Sall, Ute Ströher, Isatta Wurie, Marc A. Suchard, Philippe Lemey, Andrew Rambaut
2014 J jnl
The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates.
PLoS Comput. Biol.
Bram Vrancken, Andrew Rambaut, Marc A. Suchard, Alexei J. Drummond, Guy Baele, Inge Derdelinckx, Eric Van Wijngaerden, Anne-Mieke Vandamme, Kristel Van Laethem, Philippe Lemey
2014 J jnl
πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios.
BMC Bioinform.
Filip Bielejec, Philippe Lemey, Luiz Carvalho, Guy Baele, Andrew Rambaut, Marc A. Suchard
2013 J jnl
Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency.
Bioinform.
Guy Baele, Philippe Lemey
2013 J jnl
Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution.
BMC Bioinform.
Guy Baele, Philippe Lemey, Stijn Vansteelandt
2013 — conf
Reconstruction of an HIV Transmission History in a Bayesian Coalescent Framework.
IWBBIO
Bram Vrancken, Andrew Rambaut, Guy Baele, Anne-Mieke Vandamme, Kristel Van Laethem, Eric Van Wijngaerden, Alexei J. Drummond, Marc A. Suchard, Philippe Lemey
2011 — conf
A bio-inspired agent-based system for controlling robot behaviour.
IEEE IA
Yao Yao, Guy Baele, Yves Van de Peer
2009 B conf
Open-ended on-board Evolutionary Robotics for robot swarms.
IEEE Congress on Evolutionary Computation
Guy Baele, Nicolas Bredèche, Evert Haasdijk, Steven Maere, Nico K. Michiels, Yves Van de Peer, Thomas Schmickl, Christopher S. F. Schwarzer, Ronald Thenius