Guy-Bart Stan

67 papers A* 2A 1C 4Journal 38Unranked 22
YearRankTypeTitle / Venue / Authors
2025 J jnl
Omni-DNA: A Unified Genomic Foundation Model for Cross-Modal and Multi-Task Learning.
CoRR
Zehui Li, Vallijah Subasri, Yifei Shen, Dongsheng Li, Yiren Zhao, Guy-Bart Stan, Caihua Shan
2024 J jnl
Absorb & Escape: Overcoming Single Model Limitations in Generating Genomic Sequences.
CoRR
Zehui Li, Yuhao Ni, Guoxuan Xia, William A. V. Beardall, Akashaditya Das, Guy-Bart Stan, Yiren Zhao
2024 A* conf
Absorb & Escape: Overcoming Single Model Limitations in Generating Heterogeneous Genomic Sequences.
NeurIPS
Zehui Li, Yuhao Ni, Guoxuan Xia, William A. V. Beardall, Akashaditya Das, Guy-Bart Stan, Yiren Zhao
2024 J jnl
DiscDiff: Latent Diffusion Model for DNA Sequence Generation.
CoRR
Zehui Li, Yuhao Ni, William A. V. Beardall, Guoxuan Xia, Akashaditya Das, Guy-Bart Stan, Yiren Zhao
2024 A conf
Enhancing Node Representations for Real-World Complex Networks with Topological Augmentation.
ECAI
Xiangyu Zhao, Zehui Li, Mingzhu Shen, Guy-Bart Stan, Pietro Liò, Yiren Zhao
2024 J jnl
Enhancing Real-World Complex Network Representations with Hyperedge Augmentation.
CoRR
Xiangyu Zhao, Zehui Li, Mingzhu Shen, Guy-Bart Stan, Pietro Liò, Yiren Zhao
2024 A* conf
GV-Rep: A Large-Scale Dataset for Genetic Variant Representation Learning.
NeurIPS
Zehui Li, Vallijah Subasri, Guy-Bart Stan, Yiren Zhao, Bo Wang
2024 J jnl
GV-Rep: A Large-Scale Dataset for Genetic Variant Representation Learning.
CoRR
Zehui Li, Vallijah Subasri, Guy-Bart Stan, Yiren Zhao, Bo Wang
2023 — conf
Exploiting Resource Constraints for Controlling Biomolecular Circuits.
CDC
Abhilash Patel, Guy-Bart Stan
2023 J jnl
Genomic Interpreter: A Hierarchical Genomic Deep Neural Network with 1D Shifted Window Transformer.
CoRR
Zehui Li, Akashaditya Das, William A. V. Beardall, Yiren Zhao, Guy-Bart Stan
2023 J jnl
Hybrid Graph: A Unified Graph Representation with Datasets and Benchmarks for Complex Graphs.
CoRR
Zehui Li, Xiangyu Zhao, Mingzhu Shen, Guy-Bart Stan, Pietro Liò, Yiren Zhao
2023 J jnl
Latent Diffusion Model for DNA Sequence Generation.
CoRR
Zehui Li, Yuhao Ni, Tim August B. Huygelen, Akashaditya Das, Guoxuan Xia, Guy-Bart Stan, Yiren Zhao
2023 J jnl
Parsley: a web app for parsing data from plate readers.
Bioinform.
Eszter Csibra, Guy-Bart Stan
2022 C conf
Robust set-point regulation of gene expression using resource competition couplings in mammalian cells.
ACC
Giansimone Perrino, Guy-Bart Stan
2021 J jnl
Approximations of Countably Infinite Linear Programs over Bounded Measure Spaces.
SIAM J. Optim.
Juan Kuntz, Philipp Thomas, Guy-Bart Stan, Mauricio Barahona
2021 J jnl
Stationary Distributions of Continuous-Time Markov Chains: A Review of Theory and Truncation-Based Approximations.
SIAM Rev.
Juan Kuntz, Philipp Thomas, Guy-Bart Stan, Mauricio Barahona
2021 J jnl
Synthetic biology open language visual (SBOL Visual) version 2.3.
J. Integr. Bioinform.
Hasan Baig, Pedro Fontanarosa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Shyam Bhakta, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno, Thomas E. Gorochowski, Raik Grünberg, Jihwan Lee, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Logan Terry, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers
2020 J jnl
Synthetic biology open language visual (SBOL visual) version 2.2.
J. Integr. Bioinform.
Hasan Baig, Pedro Fontanarrosa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Michael Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers
2019 — conf
An Automatic Sparse Model Estimation Method Guided by Constraints That Encode System Properties.
ECC
Zoltán A. Tuza, Guy-Bart Stan
2019 J jnl
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.
J. Integr. Bioinform.
Curtis Madsen, Ángel Goñi-Moreno, Zachary Palchick, Umesh P, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, James Alastair McLaughlin, Tramy Nguyen, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat
2019 J jnl
The Exit Time Finite State Projection Scheme: Bounding Exit Distributions and Occupation Measures of Continuous-Time Markov Chains.
SIAM J. Sci. Comput.
Juan Kuntz, Philipp Thomas, Guy-Bart Stan, Mauricio Barahona
2018 — conf
Characterization of Biologically Relevant Network Structures form Time-series Data.
CDC
Zoltán A. Tuza, Guy-Bart Stan
2018 J jnl
Characterization of Biologically Relevant Network Structures form Time-series Data.
CoRR
Zoltán A. Tuza, Guy-Bart Stan
2018 J jnl
Global Network Prediction from Local Node Dynamics.
CoRR
Neave O'Clery, Ye Yuan, Guy-Bart Stan, Mauricio Barahona
2018 J jnl
Identification of Nonlinear State-Space Systems From Heterogeneous Datasets.
IEEE Trans. Control. Netw. Syst.
Wei Pan, Ye Yuan, Lennart Ljung, Jorge M. Gonçalves, Guy-Bart Stan
2018 J jnl
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.
J. Integr. Bioinform.
Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin, Tramy Nguyen, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat
2017 J jnl
A Minimal Realization Technique for the Dynamical Structure Function of a Class of LTI Systems.
IEEE Trans. Control. Netw. Syst.
Ye Yuan, Anurag Rai, Enoch Yeung, Guy-Bart Stan, Sean Warnick, Jorge M. Gonçalves
2016 J jnl
A Sparse Bayesian Approach to the Identification of Nonlinear State-Space Systems.
IEEE Trans. Autom. Control.
Wei Pan, Ye Yuan, Jorge M. Gonçalves, Guy-Bart Stan
2016 — conf
Biomolecular implementation of nonlinear system theoretic operators.
ECC
Mathias Foo, Rucha Sawlekar, Jongmin Kim, Declan G. Bates, Guy-Bart Stan, Vishwesh V. Kulkarni
2016 J jnl
Bounding Stationary Averages of Polynomial Diffusions via Semidefinite Programming.
SIAM J. Sci. Comput.
Juan Kuntz, Michela Ottobre, Guy-Bart Stan, Mauricio Barahona
2016 — conf
Online model selection for synthetic gene networks.
CDC
Wei Pan, Filippo Menolascina, Guy-Bart Stan
2016 J jnl
Shaping pulses to control bistable systems: Analysis, computation and counterexamples.
Autom.
Aivar Sootla, Diego A. Oyarzún, David Angeli, Guy-Bart Stan
2015 J jnl
Identifying Biochemical Reaction Networks From Heterogeneous Datasets.
CoRR
Wei Pan, Ye Yuan, Lennart Ljung, Jorge M. Gonçalves, Guy-Bart Stan
2015 — conf
Identifying biochemical reaction networks from heterogeneous datasets.
CDC
Wei Pan, Ye Yuan, Lennart Ljung, Jorge M. Gonçalves, Guy-Bart Stan
2015 J jnl
Online fault diagnosis for nonlinear power systems.
Autom.
Wei Pan, Ye Yuan, Henrik Sandberg, Jorge M. Gonçalves, Guy-Bart Stan
2015 C conf
Shaping pulses to control bistable biological systems.
ACC
Aivar Sootla, Diego A. Oyarzún, David Angeli, Guy-Bart Stan
2014 J jnl
Distributed Reconstruction of Nonlinear Networks: An ADMM Approach.
CoRR
Wei Pan, Aivar Sootla, Guy-Bart Stan
2014 — conf
Modelling essential interactions between synthetic genes and their chassis cell.
CDC
Rhys J. R. Algar, Tom Ellis, Guy-Bart Stan
2014 J jnl
Shaping Pulses to Control Multi-Stable Biological Systems.
CoRR
Aivar Sootla, Diego A. Oyarzún, David Angeli, Guy-Bart Stan
2013 — conf
Control of protein concentrations in heterogeneous cell populations.
ECC
Alejandro Vignoni, Diego A. Oyarzún, Jesús Picó, Guy-Bart Stan
2013 J jnl
Decentralised minimum-time consensus.
Autom.
Ye Yuan, Guy-Bart Stan, Ling Shi, Mauricio Barahona, Jorge M. Gonçalves
2013 J jnl
On Periodic Reference Tracking Using Batch-Mode Reinforcement Learning with Application to Gene Regulatory Network Control
CoRR
Aivar Sootla, Natalja Strelkowa, Damien Ernst, Mauricio Barahona, Guy-Bart Stan
2013 — conf
On periodic reference tracking using batch-mode reinforcement learning with application to gene regulatory network control.
CDC
Aivar Sootla, Natalja Strelkowa, Damien Ernst, Mauricio Barahona, Guy-Bart Stan
2013 — conf
Real-time fault diagnosis for large-scale nonlinear power networks.
CDC
Wei Pan, Ye Yuan, Henrik Sandberg, Jorge M. Gonçalves, Guy-Bart Stan
2013 — conf
Stochastic simulation of enzymatic reactions under transcriptional feedback regulation.
ECC
Jean-Baptiste Lugagne, Diego A. Oyarzún, Guy-Bart Stan
2013 J jnl
Toggling a Genetic Switch Using Reinforcement Learning
CoRR
Aivar Sootla, Natalja Strelkowa, Damien Ernst, Mauricio Barahona, Guy-Bart Stan
2012 J jnl
Arterial reservoir-excess pressure and ventricular work.
Medical Biol. Eng. Comput.
Kim H. Parker, Jordi Alastruey, Guy-Bart Stan
2012 — conf
Design constraints in an operon circuit for engineered control of metabolic networks.
CDC
Diego A. Oyarzún, Guy-Bart Stan
2012 C conf
Design tradeoffs in a synthetic gene control circuit for metabolic networks.
ACC
Diego A. Oyarzún, Guy-Bart Stan
2012 — conf
Dynamical structure function identifiability conditions enabling signal structure reconstruction.
CDC
J. Adebayo, T. Southwick, Vasu Chetty, Enoch Yeung, Ye Yuan, Jorge M. Gonçalves, Julianne H. Grose, J. Prince, Guy-Bart Stan, Sean Warnick
2012 J jnl
Global State Synchronization in Networks of Cyclic Feedback Systems.
IEEE Trans. Autom. Control.
Abdullah Omar Hamadeh, Guy-Bart Stan, Rodolphe Sepulchre, Jorge M. Gonçalves
2012 J jnl
Minimal realization of the dynamical structure function and its application to network reconstruction
CoRR
Ye Yuan, Guy-Bart Stan, Sean Warnick, Jorge M. Gonçalves
2012 J jnl
Reconstruction of Arbitrary Biochemical Reaction Networks: A Compressive Sensing Approach
CoRR
Wei Pan, Ye Yuan, Guy-Bart Stan
2012 — conf
Reconstruction of arbitrary biochemical reaction networks: A compressive sensing approach.
CDC
Wei Pan, Ye Yuan, Jorge M. Gonçalves, Guy-Bart Stan
2011 — conf
Decentralised minimal-time consensus.
CDC/ECC
Ye Yuan, Guy-Bart Stan, Mauricio Barahona, Ling Shi, Jorge M. Gonçalves
2011 J jnl
Fast Consensus Via Predictive Pinning Control.
IEEE Trans. Circuits Syst. I Regul. Pap.
Hai-Tao Zhang, Michael Z. Q. Chen, Guy-Bart Stan
2011 — conf
Networks of passive oscillators.
Allerton
Vishwesh V. Kulkarni, Marc D. Riedel, Guy-Bart Stan
2011 J jnl
Robust dynamical network structure reconstruction.
Autom.
Ye Yuan, Guy-Bart Stan, Sean Warnick, Jorge M. Gonçalves
2010 — conf
Constructive synchronization of networked feedback systems.
CDC
Abdullah Omar Hamadeh, Guy-Bart Stan, Jorge M. Gonçalves
2010 — conf
Robust dynamical network reconstruction.
CDC
Ye Yuan, Guy-Bart Stan, Sean Warnick, Jorge M. Gonçalves
2008 — conf
Dynamical structure analysis of sparsity and minimality heuristics for reconstruction of biochemical networks.
CDC
Russell Howes, Lee John Eccleston, Jorge M. Gonçalves, Guy-Bart Stan, Sean Warnick
2008 — conf
Robust synchronization in networks of cyclic feedback systems.
CDC
Abdullah Omar Hamadeh, Guy-Bart Stan, Jorge M. Gonçalves
2007 J jnl
Analysis of Interconnected Oscillators by Dissipativity Theory.
IEEE Trans. Autom. Control.
Guy-Bart Stan, Rodolphe Sepulchre
2007 C conf
Output synchronization in networks of cyclic biochemical oscillators.
ACC
Guy-Bart Stan, Abdullah Omar Hamadeh, Rodolphe Sepulchre, Jorge M. Gonçalves
2006 — conf
Clinical data based optimal STI strategies for HIV: a reinforcement learning approach.
CDC
Damien Ernst, Guy-Bart Stan, Jorge M. Gonçalves, Louis Wehenkel
2005 J jnl
Feedback mechanisms for global oscillations in Lure systems.
Syst. Control. Lett.
Rodolphe Sepulchre, Guy-Bart Stan
2003 — conf
Dissipativity characterization of a class of oscillators and networks of oscillators.
CDC
Guy-Bart Stan, Rodolphe Sepulchre