Gur Yaari

20 papers Journal 18
YearRankTypeTitle / Venue / Authors
2024 J jnl
An unbiased comparison of immunoglobulin sequence aligners.
Briefings Bioinform.
Thomas Konstantinovsky, Ayelet Peres, Pazit Polak, Gur Yaari
2024 J jnl
Digger: directed annotation of immunoglobulin and T cell receptor V, D, and J gene sequences and assemblies.
Bioinform.
William D. Lees, Swati Saha, Gur Yaari, Corey T. Watson
2024 J jnl
Guidelines for reproducible analysis of adaptive immune receptor repertoire sequencing data.
Briefings Bioinform.
Ayelet Peres, Vered Klein, Boaz Frankel, William D. Lees, Pazit Polak, Mark Meehan, Artur Rocha, João Correia Lopes, Gur Yaari
2024 J jnl
nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework.
PLoS Comput. Biol.
Gisela Gabernet, Susanna Marquez, Robert Bjornson, Alexander Peltzer, Hailong Meng, Edel Aron, Noah Y. Lee, Cole G. Jensen, David Ladd, Mark Polster, Friederike Hanssen, Simon Heumos, Gur Yaari, Markus C. Kowarik, Sven Nahnsen, Steven H. Kleinstein
2023 J jnl
A novel approach to T-cell receptor beta chain (TCRB) repertoire encoding using lossless string compression.
Bioinform.
Thomas Konstantinovsky, Gur Yaari
2021 J jnl
Breast cancer is marked by specific, Public T-cell receptor CDR3 regions shared by mice and humans.
PLoS Comput. Biol.
Miri Gordin, Hagit Philip, Alona Zilberberg, Moriah Gidoni, Raanan Margalit, Christopher Clouser, Kristofor Adams, Francois Vigneault, Irun R. Cohen, Gur Yaari, Sol Efroni
2021 J jnl
Gambling Strategies and Prize-Pricing Recommendation in Sports Multi-Bets.
Big Data Cogn. Comput.
Oz Pirvandy, Moti Fridman, Gur Yaari
2021 J jnl
The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires.
Nat. Mach. Intell.
Milena Pavlovic, Lonneke Scheffer, Keshav Motwani, Chakravarthi Kanduri, Radmila Kompova, Nikolay Vazov, Knut Waagan, Fabian L. M. Bernal, Alexandre Almeida Costa, Brian Corrie, Rahmad Akbar, Ghadi S. Al Hajj, Gabriel Balaban, Todd M. Brusko, Maria Chernigovskaya, Scott Christley, Lindsay G. Cowell, Robert Frank, Ivar Grytten, Sveinung Gundersen, Ingrid Hobæk Haff, Eivind Hovig, Ping-Han Hsieh, Günter Klambauer, Marieke L. Kuijjer, Christin Lund-Andersen, Antonio Martini, Thomas Minotto, Johan Pensar, Knut D. Rand, Enrico Riccardi, Philippe A. Robert, Artur Rocha, Andrei Slabodkin, Igor Snapkov, Ludvig Magne Sollid, Dmytro Titov, Cédric R. Weber, Michael Widrich, Gur Yaari, Victor Greiff, Geir Kjetil Sandve
2020 J jnl
Axonal Tree Morphology and Signal Propagation Dynamics Improve Interneuron Classification.
Neuroinformatics
Netanel Ofer, Orit Shefi, Gur Yaari
2020 J jnl
OGRDB: a reference database of inferred immune receptor genes.
Nucleic Acids Res.
William D. Lees, Christian E. Busse, Martin Corcoran, Mats Ohlin, Cathrine Scheepers, Frederick A. Matsen IV, Gur Yaari, Corey T. Watson, Andrew M. Collins, Adrian J. Shepherd
2020 J jnl
VDJbase: an adaptive immune receptor genotype and haplotype database.
Nucleic Acids Res.
Aviv Omer, Or Shemesh, Ayelet Peres, Pazit Polak, Adrian J. Shepherd, Corey T. Watson, Scott D. Boyd, Andrew M. Collins, William D. Lees, Gur Yaari
2019 J jnl
Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE).
PLoS Comput. Biol.
Hailong Meng, Gur Yaari, Christopher R. Bolen, Stefan Avey, Steven H. Kleinstein
2019 — ch.
Immunoglobulin Clonotype and Ontogeny Inference.
Encyclopedia of Bioinformatics and Computational Biology (2)
Pazit Polak, Ramit Mehr, Gur Yaari
2019 J jnl
RAbHIT: R Antibody Haplotype Inference Tool.
Bioinform.
Ayelet Peres, Moriah Gidoni, Pazit Polak, Gur Yaari
2015 J jnl
Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data.
Bioinform.
Namita T. Gupta, Jason A. Vander Heiden, Mohamed Uduman, Daniel Gadala-Maria, Gur Yaari, Steven H. Kleinstein
2014 J jnl
pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires.
Bioinform.
Jason A. Vander Heiden, Gur Yaari, Mohamed Uduman, Joel N. H. Stern, Kevin C. O'Connor, David A. Hafler, Francois Vigneault, Steven H. Kleinstein
2011 J jnl
Detecting selection in immunoglobulin sequences.
Nucleic Acids Res.
Mohamed Uduman, Gur Yaari, Uri Hershberg, Jacob A. Stern, Mark J. Shlomchik, Steven H. Kleinstein
2010 J jnl
Optimizing Metapopulation Sustainability through a Checkerboard Strategy.
PLoS Comput. Biol.
Yossi Ben Zion, Gur Yaari, Nadav M. Shnerb
2009 J jnl
Do all economies grow equally fast?
Risk Decis. Anal.
Yaniv Dover, Sonia Moulet, Sorin Solomon, Gur Yaari
2009 — ch.
Intermittency and Localization.
Encyclopedia of Complexity and Systems Science
Gur Yaari, Dietrich Stauffer, Sorin Solomon