Guoqing Zhang

33 papers B 1Journal 28Unranked 4
YearRankTypeTitle / Venue / Authors
2025 J jnl
PreDigs: A Database of Context-specific Cell Type Markers and Precise Cell Subtypes for Digestive Cell Annotation.
Genom. Proteom. Bioinform.
Jiayue Meng, Mengyao Han, Yuwei Huang, Liang Li, Yuanhu Ju, Daqing Lv, Xiaoyi Chen, Liyun Yuan, Guoqing Zhang
2025 — conf
Retrieval-Augmented Generation Enhanced Domain-Adaptive Question Answering System for Radiation Biology.
BIBM
Wanting Hu, Mengyao Wang, Xinhao Zhuang, Guoping Zhao, Peng Zhang, Guoqing Zhang
2024 J jnl
CPMKG: a condition-based knowledge graph for precision medicine.
Database J. Biol. Databases Curation
Jiaxin Yang, Xinhao Zhuang, Zhenqi Li, Gang Xiong, Ping Xu, Yunchao Ling, Guoqing Zhang
2024 J jnl
CyclicPepedia: a knowledge base of natural and synthetic cyclic peptides.
Briefings Bioinform.
Lei Liu, Liu Yang, Suqi Cao, Zhigang Gao, Bin Yang, Guoqing Zhang, Ruixin Zhu, Dingfeng Wu
2024 J jnl
NAFLDkb: A Knowledge Base and Platform for Drug Development against Nonalcoholic Fatty Liver Disease.
J. Chem. Inf. Model.
Tingjun Xu, Wenxing Gao, Lixin Zhu, Wanning Chen, Chaoqun Niu, Wenjing Yin, Liangxiao Ma, Xinyue Zhu, Yunchao Ling, Sheng Gao, Lei Liu, Na Jiao, Weiming Chen, Guoqing Zhang, Ruixin Zhu, Dingfeng Wu
2023 J jnl
A cell marker-based clustering strategy (cmCluster) for precise cell type identification of scRNA-seq data.
Quant. Biol.
Yuwei Huang, Huidan Chang, Xiaoyi Chen, Jiayue Meng, Mengyao Han, Tao Huang, Liyun Yuan, Guoqing Zhang
2023 — conf
A domain adaptive pre-training language model for sentence classification of Chinese electronic medical record.
BIBM
Yilin Zou, Peng Zhang, Yunchao Ling, Daqing Lv, Ziming Li, Shun Lu, Guoqing Zhang
2023 — conf
A dual-channel deep learning approach to continuous prediction of acute kidney injury in the intensive care unit.
BIBM
Xuetong Kong, Peng Zhang, Yunchao Ling, Daqing Lv, Jun Xu, Guoqing Zhang
2023 J jnl
PGG.SV: a whole-genome-sequencing-based structural variant resource and data analysis platform.
Nucleic Acids Res.
Yimin Wang, Yunchao Ling, Jiao Gong, Xiaohan Zhao, Hanwen Zhou, Bo Xie, Haiyi Lou, Xinhao Zhuang, Li Jin, Shaohua Fan, Guoqing Zhang, Shuhua Xu
2023 J jnl
SMDB: a Spatial Multimodal Data Browser.
Nucleic Acids Res.
Ruifang Cao, Yunchao Ling, Jiayue Meng, Ao Jiang, Ruijin Luo, Qinwen He, Anan Li, Yujie Chen, Zoutao Zhang, Feng Liu, Yixue Li, Guoqing Zhang
2022 J jnl
Coronavirus GenBrowser for monitoring the transmission and evolution of SARS-CoV-2.
Briefings Bioinform.
Dalang Yu, Xiao Yang, Bixia Tang, Yi-Hsuan Pan, Jianing Yang, Guangya Duan, Junwei Zhu, Zi-Qian Hao, Hailong Mu, Long Dai, Wangjie Hu, Mochen Zhang, Ying Cui, Tong Jin, Cui-Ping Li, Lina Ma, Xiao Su, Guoqing Zhang, Wenming Zhao, Haipeng Li
2022 J jnl
Deep learning-based large-scale named entity recognition for anatomical region of mammalian brain.
Quant. Biol.
Xiaokang Chai, Yachao Di, Zhao Feng, Yue Guan, Guoqing Zhang, Anan Li, Qingming Luo
2022 J jnl
dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms.
Genom. Proteom. Bioinform.
Feng Xu, Yifan Wang, Yunchao Ling, Chenfen Zhou, Haizhou Wang, Andrew E. Teschendorff, Yi Zhao, Haitao Zhao, Yungang He, Guoqing Zhang, Zhen Yang
2021 J jnl
A Novel Method of Chinese Electronic Medical Records Entity Labeling Based on BIC model.
J. Softw.
Yifan Wang, Guowei Teng, Xuehai Ding, Guoqing Zhang, Yunchao Ling, Guozhong Wang
2021 J jnl
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021.
Nucleic Acids Res.
Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Shuhui Song, Lina Ma, Dong Zou, Dongmei Tian, Cuiping Li, Junwei Zhu, Zheng Gong, Meili Chen, Anke Wang, Yingke Ma, Mengwei Li, Xufei Teng, Ying Cui, Guangya Duan, Mochen Zhang, Tong Jin, Chengmin Shi, Zhenglin Du, Yadong Zhang, Chuandong Liu, Rujiao Li, Jingyao Zeng, Lili Hao, Shuai Jiang, Hua Chen, Dali Han, Tao Zhang, Wang Kang, Fei Yang, Jing Qu, Weiqi Zhang, Guanghui Liu, Lin Liu, Yang Zhang, Guangyi Niu, Tongtong Zhu, Changrui Feng, Xiaonan Liu, Yuansheng Zhang, Zhao Li, Ruru Chen, Qianpeng Li, Zhongyi Hua, Chao Jiang, Ziyuan Chen, Fangshu He, Yuyang Zhao, Yan Jin, Luqi Huang, Yuan Yuan, Chenfen Zhou, Qingwei Xu, Sheng He, Wei Ye, Ruifang Cao, Pengyu Wang, Yunchao Ling, Xing Yan, Qingzhong Wang, Qiang Du, Wenting Zong, Hongen Kang, Zhuang Xiong, Wendi Huan, Sirui Zhang, Qiguang Xia, Xiaojuan Fan, Zefeng Wang, Xu Chen, Tingting Chen, Sisi Zhang, Bixia Tang, Lili Dong, Zhewen Zhang, Zhonghuang Wang, Hailong Kang, Yanqing Wang, Song Wu, Ming Chen, Chang Liu, Yujia Xiong, Xueying Shao, Yanyan Li, Honghong Zhou, Xiaomin Chen, Yu Zheng, Quan Kang, Di Hao, LiLi Zhang, Huaxia Luo, Yajing Hao, Peng Zhang, Zhi Nie, Shuhuan Yu, Jian Sang, Zhaohua Li, Xiangquan Zhang, Qing Zhou, Shuang Zhai, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Jun Yan, Chen Li, Zhennan Wang, Xiangfeng Wang, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Hai-Chun Jing, Lianhe Zhao, Jiajia Wang, Tinrui Song, Yi Zhao, Furrukh Mehmood, Shahid Ali, Amjad Ali, Shoaib Saleem, Irfan Hussain, Amir Ali Abbasi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Yiran Tu, Yu Xue, Wanying Wu, Peifeng Ji, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao, Wanshan Ning, Shaofeng Lin, Teng Liu, An-Yuan Guo, Hao Yuan, Yong E. Zhang, Xiaodan Tan, Weizhi Zhang, Yubin Xie, Chenwei Wang, Chun-Jie Liu, De-Chang Yang, Feng Tian, Ge Gao, Dachao Tang, Lan Yao, Qinghua Cui, Ni A. An, Chuan-Yun Li, Xiaotong Luo
2021 J jnl
Dr AFC: drug repositioning through anti-fibrosis characteristic.
Briefings Bioinform.
Dingfeng Wu, Wenxing Gao, Xiaoyi Li, Chuan Tian, Na Jiao, Sa Fang, Jing Xiao, Zhifeng Xu, Lixin Zhu, Guoqing Zhang, Ruixin Zhu
2021 J jnl
TransCirc: an interactive database for translatable circular RNAs based on multi-omics evidence.
Nucleic Acids Res.
Wendi Huang, Yunchao Ling, Sirui Zhang, Qiguang Xia, Ruifang Cao, Xiaojuan Fan, Zhaoyuan Fang, Zefeng Wang, Guoqing Zhang
2020 J jnl
EpiDISH web server: Epigenetic Dissection of Intra-Sample-Heterogeneity with online GUI.
Bioinform.
Shijie C. Zheng, Charles E. Breeze, Stephan Beck, Danyue Dong, Tianyu Zhu, Liang-Xiao Ma, Wei Ye, Guoqing Zhang, Andrew E. Teschendorff
2020 J jnl
GTDB: an integrated resource for glycosyltransferase sequences and annotations.
Database J. Biol. Databases Curation
Chenfen Zhou, Qingwei Xu, Sheng He, Wei Ye, Ruifang Cao, Pengyu Wang, Yunchao Ling, Xing Yan, Qingzhong Wang, Guoqing Zhang
2020 J jnl
PGG.Han: the Han Chinese genome database and analysis platform.
Nucleic Acids Res.
Yang Gao, Chao Zhang, Liyun Yuan, Yunchao Ling, Xiaoji Wang, Chang Liu, Yuwen Pan, Xiaoxi Zhang, Xixian Ma, Yuchen Wang, Yan Lu, Kai Yuan, Wei Ye, Jiaqiang Qian, Huidan Chang, Ruifang Cao, Xiao Yang, Ling Ma, Yuanhu Ju, Long Dai, Yuanyuan Tang, Guoqing Zhang, Shuhua Xu
2020 J jnl
PhenoModifier: a genetic modifier database for elucidating the genetic basis of human phenotypic variation.
Nucleic Acids Res.
Hong Sun, Yangfan Guo, Xiaoping Lan, Jia Jia, XiaoShu Cai, Guoqing Zhang, Jingjing Xie, Qian Liang, Yixue Li, Guangjun Yu
2019 — conf
A New Method for Complex Triplet Extraction of Biomedical Texts.
KSEM (2)
Xiao Wang, Qing Li, Xuehai Ding, Guoqing Zhang, Linhong Weng, Minjie Ding
2019 B conf
Knowledge Graph Embedding by Bias Vectors.
ICTAI
Minjie Ding, Weiqin Tong, Xuehai Ding, Xiaoli Zhi, Xiao Wang, Guoqing Zhang
2019 J jnl
iProX: an integrated proteome resource.
Nucleic Acids Res.
Jie Ma, Tao Chen, Songfeng Wu, Chunyuan Yang, Mingze Bai, Kunxian Shu, Kenli Li, Guoqing Zhang, Zhong Jin, Fuchu He, Henning Hermjakob, Yunping Zhu
2015 J jnl
Web Resources for Pharmacogenomics.
Genom. Proteom. Bioinform.
Guoqing Zhang, Yunsheng Zhang, Yunchao Ling, Jia Jia
2014 J jnl
SysPTM 2.0: an updated systematic resource for post-translational modification.
Database J. Biol. Databases Curation
Jing Li, Jia Jia, Hong Li, Jian Yu, Han Sun, Ying He, Daqing Lv, Xiaojuan Yang, Michael O. Glocker, Liang-Xiao Ma, Jiabei Yang, Ling Li, Wei Li, Guoqing Zhang, Qian Liu, Yixue Li, Lu Xie
2014 J jnl
The optimization of running time for a maximum common substructure-based algorithm and its application in drug design.
Comput. Biol. Chem.
Jian Chen, Jia Sheng, Dijing Lv, Yang Zhong, Guoqing Zhang, Peng Nan
2012 J jnl
A universal assortativity measure for network analysis
CoRR
Guoqing Zhang, Suqi Cheng, Guo-Qiang Zhang
2012 J jnl
dbDEPC 2.0: updated database of differentially expressed proteins in human cancers.
Nucleic Acids Res.
Ying He, Menghuan Zhang, Yuanhu Ju, Zhong-Hao Yu, Daqing Lv, Han Sun, Weilan Yuan, Fei He, Jianshe Zhang, Hong Li, Jing Li, Rui Wang-Sattler, Yixue Li, Guoqing Zhang, Lu Xie
2009 J jnl
DBH2H: vertebrate head-to-head gene pairs annotated at genomic and post-genomic levels.
Database J. Biol. Databases Curation
Hui Yu, Fudong Yu, Guoqing Zhang, Xiang Shen, Yun-Qin Chen, Yuan-Yuan Li, Yi-Xue Li
2008 J jnl
GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations.
BMC Bioinform.
Qingwei Xu, Yixiang Shi, Qiang Lu, Guoqing Zhang, Qingming Luo, Yixue Li
2006 J jnl
Operon prediction based on SVM.
Comput. Biol. Chem.
Guoqing Zhang, Zhi-Wei Cao, Qingming Luo, Yu-Dong Cai, Yixue Li
2005 J jnl
Chinese Internet AS-level Topology
CoRR
Shi Zhou, Guo-Qiang Zhang, Guoqing Zhang