Guo-Cheng Yuan

20 papers C 1Misc 1Journal 15Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
Orthogonal multimodality integration and clustering in single-cell data.
BMC Bioinform.
Yufang Liu, Yongkai Chen, Haoran Lu, Wenxuan Zhong, Guo-Cheng Yuan, Ping Ma
2021 J jnl
CUT&RUNTools 2.0: a pipeline for single-cell and bulk-level CUT&RUN and CUT&Tag data analysis.
Bioinform.
Fulong Yu, Vijay G. Sankaran, Guo-Cheng Yuan
2020 J jnl
GiniClust3: a fast and memory-efficient tool for rare cell type identification.
BMC Bioinform.
Rui Dong, Guo-Cheng Yuan
2019 J jnl
BORIS promotes chromatin regulatory interactions in treatment-resistant cancer cells.
Nat.
David N. Debruyne, Ruben Dries, Satyaki Sengupta, Davide Seruggia, Yang Gao, Bandana Sharma, Hao Huang, Lisa Moreau, Michael McLane, Daniel S. Day, Eugenio Marco, Ting Chen, Nathanael S. Gray, Kwok-Kin Wong, Stuart H. Orkin, Guo-Cheng Yuan, Richard A. Young, Rani E. George
2019 J jnl
RESCUE: imputing dropout events in single-cell RNA-sequencing data.
BMC Bioinform.
Sam Tracy, Guo-Cheng Yuan, Ruben Dries
2019 Misc conf
Session introduction.
PSB
Lana X. Garmire, Guo-Cheng Yuan, Rong Fan, Gene W. Yeo, John Quackenbush
2019 J jnl
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program.
Nat.
Michael P. Snyder, Shin Lin, Amanda Posgai, Mark Atkinson, Aviv Regev, Jennifer Rood, Orit Rozenblatt-Rosen, Leslie Gaffney, Anna Hupalowska, Rahul Satija, Nils Gehlenborg, Jay Shendure, Julia Laskin, Pehr Harbury, Nicholas A. Nystrom, Jonathan C. Silverstein, Ziv Bar-Joseph, Kun Zhang, Katy Börner, Yiing Lin, Richard Conroy, Dena Procaccini, Ananda L. Roy, Ajay Pillai, Marishka Brown, Zorina S. Galis, Long Cai, Cole Trapnell, Dana Jackson, Garry P. Nolan, William James Greenleaf, Sylvia K. Plevritis, Sara Ahadi, Stephanie A. Nevins, Hayan Lee, Christian Martijn Schuerch, Sarah Black, Vishal Gautham Venkataraaman, Ed Esplin, Aaron Horning, Amir Bahmani, Xin Sun, Sanjay Jain, James S. Hagood, Gloria Pryhuber, Peter V. Kharchenko, Bernd Bodenmiller, Todd Brusko, Michael Clare-Salzler, Harry Nick, Kevin Otto, Clive Wasserfall, Marda Jorgensen, Maigan Brusko, Sergio Maffioletti, Richard M. Caprioli, Jeffrey M. Spraggins, Danielle Gutierrez, Nathan Heath Patterson, Elizabeth K. Neumann, Raymond Harris, Mark P. de Caestecker, Agnes B. Fogo, Raf Van de Plas, Ken Lau, Guo-Cheng Yuan, Qian Zhu, Ruben Dries, Peng Yin, Sinem K. Saka, Jocelyn Y. Kishi, Yu Wang, Isabel Goldaracena, Dong Hye Ye, Kristin E. Burnum-Johnson, Paul D. Piehowski, Charles Ansong, Ying Zhu, Tushar Desai, Jay Mulye, Peter Chou, Monica Nagendran, Sarah A. Teichmann, Benedict Paten, Robert F. Murphy, Jian Ma, Vladimir Yu. Kiselev, Carl Kingsford, Allyson Ricarte, Maria Keays, Sushma Anand Akoju, Matthew Ruffalo, Margaret Vella, Chuck McCallum, Leonard E. Cross, Samuel H. Friedman, Randy W. Heiland, Bruce William Herr II, Paul Macklin, Ellen M. Quardokus, Lisel Record, James P. Sluka, Griffin M. Weber, Philip D. Blood, Alexander Ropelewski, William Shirey, Robin M. Scibek, Paula M. Mabee, W. Christopher Lenhardt, Kimberly Robasky, Stavros Michailidis, John C. Marioni, Andrew Butler, Tim Stuart, Eyal Fisher, Shila Ghazanfar, Gökcen Eraslan, Tommaso Biancalani, Eeshit D. Vaishnav, Pothur Srinivas, Aaron Pawlyk, Salvatore Sechi, Elizabeth L. Wilder, James Anderson
2018 J jnl
Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements.
Bioinform.
Luca Pinello, Rick Farouni, Guo-Cheng Yuan
2015 J jnl
A network model for angiogenesis in ovarian cancer.
BMC Bioinform.
Kimberly Glass, John Quackenbush, Dimitrios Spentzos, Benjamin Haibe-Kains, Guo-Cheng Yuan
2014 J jnl
Applications of alignment-free methods in epigenomics.
Briefings Bioinform.
Luca Pinello, Giosuè Lo Bosco, Guo-Cheng Yuan
2014 J jnl
Sexually-dimorphic targeting of functionally-related genes in COPD.
BMC Syst. Biol.
Kimberly Glass, John Quackenbush, Edwin K. Silverman, Bartolome Celli, Stephen I. Rennard, Guo-Cheng Yuan, Dawn L. DeMeo
2011 J jnl
A motif-independent metric for DNA sequence specificity.
BMC Bioinform.
Luca Pinello, Giosuè Lo Bosco, Bret M. Hanlon, Guo-Cheng Yuan
2011 — ch.
Prediction of Epigenetic Target Sites by Using Genomic DNA Sequence.
Handbook of Research on Computational and Systems Biology
Guo-Cheng Yuan
2011 — conf
Workshop: Targeting mechanism of epigenetic factors.
ICCABS
Guo-Cheng Yuan
2010 J jnl
A hidden Markov model for detecting multi-gene chromatin domains.
BMC Bioinform.
Jessica L. Larson, Guo-Cheng Yuan
2010 J jnl
Epigenetic domains found in mouse embryonic stem cells via a hidden Markov model.
BMC Bioinform.
Jessica L. Larson, Guo-Cheng Yuan
2009 J jnl
Targeted Recruitment of Histone Modifications in Humans Predicted by Genomic Sequences.
J. Comput. Biol.
Guo-Cheng Yuan
2008 J jnl
Genomic Sequence Is Highly Predictive of Local Nucleosome Depletion.
PLoS Comput. Biol.
Guo-Cheng Yuan, Jun S. Liu
2007 — conf
A New Multi-Layers Method to Analyze Gene Expression.
KES (3)
Davide F. V. Corona, Vito Di Gesù, Giosuè Lo Bosco, Luca Pinello, Guo-Cheng Yuan
2007 C conf
Statistial Analysis of nucleosome occupancy and histone modification data.
BIBE
Guo-Cheng Yuan, Jun S. Liu