Guillaume Marçais

25 papers B 1C 2Journal 19Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
Turnpike with Uncertain Measurements: Triangle-Equality ILP with a Deterministic Recovery Guarantee.
CoRR
C. S. Elder, Guillaume Marçais, Carl Kingsford
2025 J jnl
A synthesis for uniformly 3-edge-connected graphs.
Discret. Appl. Math.
Carl Kingsford, Guillaume Marçais
2024 J jnl
Density and Conservation Optimization of the Generalized Masked-Minimizer Sketching Scheme.
J. Comput. Biol.
Minh Hoang, Guillaume Marçais, Carl Kingsford
2024 J jnl
Sketching Methods with Small Window Guarantee Using Minimum Decycling Sets.
J. Comput. Biol.
Guillaume Marçais, Dan F. DeBlasio, Carl Kingsford
2023 J jnl
Creating and Using Minimizer Sketches in Computational Genomics.
J. Comput. Biol.
Hongyu Zheng, Guillaume Marçais, Carl Kingsford
2023 J jnl
Sketching methods with small window guarantee using minimum decycling sets.
CoRR
Guillaume Marçais, Dan F. DeBlasio, Carl Kingsford
2021 J jnl
Harvestman: a framework for hierarchical feature learning and selection from whole genome sequencing data.
BMC Bioinform.
Trevor S. Frisby, Shawn J. Baker, Guillaume Marçais, Quang Minh Hoang, Carl Kingsford, Christopher J. Langmead
2021 J jnl
Lower Density Selection Schemes via Small Universal Hitting Sets with Short Remaining Path Length.
J. Comput. Biol.
Hongyu Zheng, Carl Kingsford, Guillaume Marçais
2021 J jnl
Sequence-specific minimizers via polar sets.
Bioinform.
Hongyu Zheng, Carl Kingsford, Guillaume Marçais
2020 J jnl
Improved design and analysis of practical minimizers.
Bioinform.
Hongyu Zheng, Carl Kingsford, Guillaume Marçais
2020 B conf
Lower Density Selection Schemes via Small Universal Hitting Sets with Short Remaining Path Length.
RECOMB
Hongyu Zheng, Carl Kingsford, Guillaume Marçais
2020 J jnl
Lower density selection schemes via small universal hitting sets with short remaining path length.
CoRR
Hongyu Zheng, Carl Kingsford, Guillaume Marçais
2019 J jnl
Locality-sensitive hashing for the edit distance.
Bioinform.
Guillaume Marçais, Dan F. DeBlasio, Prashant Pandey, Carl Kingsford
2019 — conf
Practical Universal k-mer Sets for Minimizer Schemes.
BCB
Dan F. DeBlasio, Fiyinfoluwa Gbosibo, Carl Kingsford, Guillaume Marçais
2018 J jnl
Asymptotically optimal minimizers schemes.
Bioinform.
Guillaume Marçais, Dan F. DeBlasio, Carl Kingsford
2018 J jnl
MUMmer4: A fast and versatile genome alignment system.
PLoS Comput. Biol.
Guillaume Marçais, Arthur L. Delcher, Adam M. Phillippy, Rachel Coston, Steven L. Salzberg, Aleksey V. Zimin
2017 J jnl
Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing.
PLoS Comput. Biol.
Yaron Orenstein, David Pellow, Guillaume Marçais, Ron Shamir, Carl Kingsford
2017 J jnl
Improving the performance of minimizers and winnowing schemes.
Bioinform.
Guillaume Marçais, David Pellow, Daniel Bork, Yaron Orenstein, Ron Shamir, Carl Kingsford
2016 C conf
Compact Universal k-mer Hitting Sets.
WABI
Yaron Orenstein, David Pellow, Guillaume Marçais, Ron Shamir, Carl Kingsford
2013 J jnl
The MaSuRCA genome assembler.
Bioinform.
Aleksey V. Zimin, Guillaume Marçais, Daniela Puiu, Michael Roberts, Steven L. Salzberg, James A. Yorke
2012 J jnl
Parsimonious reconstruction of network evolution.
Algorithms Mol. Biol.
Rob Patro, Emre Sefer, Justin Malin, Guillaume Marçais, Saket Navlakha, Carl Kingsford
2011 J jnl
A fast, lock-free approach for efficient parallel counting of occurrences of
Bioinform.
Guillaume Marçais, Carl Kingsford
2011 — —
Genome Assembly Techniques.
Guillaume Marçais
2011 C conf
Parsimonious Reconstruction of Network Evolution.
WABI
Rob Patro, Emre Sefer, Justin Malin, Guillaume Marçais, Saket Navlakha, Carl Kingsford
2000 — conf
An Automated Benchmarking Toolset.
HPCN Europe
Michel Courson, Alan Mink, Guillaume Marçais, Benjamin Traverse