Guillaume Bourque

18 papers A* 1C 1Misc 1Journal 11Unranked 3
YearRankTypeTitle / Venue / Authors
2024 J jnl
EpiVar Browser: advanced exploration of epigenomics data under controlled access.
Bioinform.
David R. Lougheed, Hanshi Liu, Katherine A. Aracena, Romain Grégoire, Alain Pacis, Tomi Pastinen, Luis B. Barreiro, Yann Joly, David Bujold, Guillaume Bourque
2023 J jnl
RNAget: an API to securely retrieve RNA quantifications.
Bioinform.
Sean Upchurch, Emilio Palumbo, Jeremy Adams, David Bujold, Guillaume Bourque, Jared Nedzel, Keenan Graham, Meenakshi S. Kagda, Pedro Assis, Benjamin C. Hitz, Emilio Righi, Roderic Guigó, Barbara J. Wold, Alvis Brazma, Julia Burchard, Joe Capka, Michael Cherry, Laura Clarke, Brian Craft, Manolis Dermitzakis, Mark Diekhans, John Dursi, Michael Sean Fitzsimons, Zac Flaming, Romina Garrido, Alfred Gil, Paul Godden, Matt Green, Mitch Guttman, Brian Haas, Max Haeussler, Bo Li, Sten Linnarsson, Adam Lipski, David Liu, Simonne Longerich, David R. Lougheed, Jonathan Manning, John C. Marioni, Christopher Meyer, Stephen B. Montgomery, Alyssa Morrow, Alfonso Muñoz-Pomer Fuentes, Jared L. Nedzel, David Nguyen, Kevin Osborn, Francis Ouellette, Irene Papatheodorou, Dmitri D. Pervouchine, Arun K. Ramani, Jordi Rambla, Bashir Sadjad, David Steinberg, Jeremiah Talkar, Timothy Tickle, Kathy Tzeng, Saman Vaisipour, Sean Watford, Barbara Wold, Zhenyu Zhang, Jing Zhu
2022 J jnl
Generalized Functional Pruning Optimal Partitioning (GFPOP) for Constrained Changepoint Detection in Genomic Data.
J. Stat. Softw.
Toby Dylan Hocking, Guillem Rigaill, Paul Fearnhead, Guillaume Bourque
2020 J jnl
Constrained Dynamic Programming and Supervised Penalty Learning Algorithms for Peak Detection in Genomic Data.
J. Mach. Learn. Res.
Toby Dylan Hocking, Guillem Rigaill, Paul Fearnhead, Guillaume Bourque
2020 Misc conf
Machine Learning Algorithms for Simultaneous Supervised Detection of Peaks in Multiple Samples andCell Types.
PSB
Toby Dylan Hocking, Guillaume Bourque
2019 J jnl
The epiGenomic Efficient Correlator (epiGeEC) tool allows fast comparison of user datasets with thousands of public epigenomic datasets.
Bioinform.
Jonathan Laperle, Simon Hébert-Deschamps, Joanny Raby, David A. de Lima Morais, Michel Barrette, David Bujold, Charlotte Bastin, Marc-Antoine Robert, Jean-François Nadeau, Marie Harel, Alexei Nordell-Markovits, Alain Veilleux, Guillaume Bourque, Pierre-Étienne Jacques
2019 C conf
The use of hyperspectral remote sensing to detect PCB contaminated soils in the 0.35 to 12 micron spectral range.
IGARSS
Josée Lévesque, Eldon Puckrin, Luc Levert, Guillaume Bourque
2019 J jnl
eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data.
Bioinform.
Charles E. Breeze, Alex P. Reynolds, Jenny van Dongen, Ian Dunham, John Lazar, Shane J. Neph, Jeff Vierstra, Guillaume Bourque, Andrew E. Teschendorff, John A. Stamatoyannopoulos, Stephan Beck
2018 J jnl
MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis.
Nucleic Acids Res.
Jasmine Chong, Othman Soufan, Carin Li, Iurie Caraus, Shuzhao Li, Guillaume Bourque, David S. Wishart, Jianguo Xia
2017 J jnl
Optimizing ChIP-seq peak detectors using visual labels and supervised machine learning.
Bioinform.
Toby Dylan Hocking, Patricia Goerner-Potvin, Andreanne Morin, Xiaojian Shao, Tomi Pastinen, Guillaume Bourque
2015 A* conf
PeakSeg: constrained optimal segmentation and supervised penalty learning for peak detection in count data.
ICML
Toby Hocking, Guillem Rigaill, Guillaume Bourque
2010 — conf
Prediction of low coverage prone regions for Illumina sequencing projects using a support vector machine.
BIBM
Zejun Zheng, Bertil Schmidt, Guillaume Bourque
2010 J jnl
webMGR: an online tool for the multiple genome rearrangement problem.
Bioinform.
Chi Ho Lin, Hao Zhao, Sean Harry Lowcay, Atif Shahab, Guillaume Bourque
2007 — conf
Recovering True Rearrangement Events on Phylogenetic Trees.
RECOMB-CG
Hao Zhao, Guillaume Bourque
2006 — ed.
Comparative Genomics, RECOMB 2006 International Workshop, RCG 2006, Montreal, Canada, September 24-26, 2006, Proceedings
Comparative Genomics
Guillaume Bourque, Nadia El-Mabrouk
2006 J jnl
Models and Methods in Comparative Genomics.
Adv. Comput.
Guillaume Bourque, Louxin Zhang
2005 — conf
Maximizing Synteny Blocks to Identify Ancestral Homologs.
Comparative Genomics
Guillaume Bourque, Yasmine Yacef, Nadia El-Mabrouk
2004 J jnl
Improving Gene Network Inference by Comparing Expression Time-series across Species, Developmental Stages or Tissues.
J. Bioinform. Comput. Biol.
Guillaume Bourque, David Sankoff