Gui-Jun Zhang

35 papers B 1Journal 34
YearRankTypeTitle / Venue / Authors
2024 J jnl
Recent Advances and Challenges in Protein Structure Prediction.
J. Chem. Inf. Model.
Chunxiang Peng, Fang Liang, Yuhao Xia, Kai-Long Zhao, Minghua Hou, Gui-Jun Zhang
2023 J jnl
DeepUMQA3: a web server for accurate assessment of interface residue accuracy in protein complexes.
Bioinform.
Jun Liu, Dong Liu, Gui-Jun Zhang
2023 J jnl
DomBpred: Protein Domain Boundary Prediction Based on Domain-Residue Clustering Using Inter-Residue Distance.
IEEE ACM Trans. Comput. Biol. Bioinform.
Zhong-Ze Yu, Chunxiang Peng, Jun Liu, Biao Zhang, Xiao-Gen Zhou, Gui-Jun Zhang
2023 J jnl
E2EDA: Protein Domain Assembly Based on End-to-End Deep Learning.
J. Chem. Inf. Model.
Hai-Tao Zhu, Yuhao Xia, Gui-Jun Zhang
2023 J jnl
Improving DNA 6mA Site Prediction via Integrating Bidirectional Long Short-Term Memory, Convolutional Neural Network, and Self-Attention Mechanism.
J. Chem. Inf. Model.
Jun Hu, Yu-Xuan Tang, Yu Zhou, Zhe Li, Bing Rao, Gui-Jun Zhang
2023 J jnl
Improving DNA-Binding Protein Prediction Using Three-Part Sequence-Order Feature Extraction and a Deep Neural Network Algorithm.
J. Chem. Inf. Model.
Jun Hu, Wenwu Zeng, Ning-Xin Jia, Muhammad Arif, Dong-Jun Yu, Gui-Jun Zhang
2023 J jnl
Mutually unbiased maximally entangled bases in C
Quantum Inf. Process.
Lai-Zhen Luo, Yu Xia, Gui-Jun Zhang
2022 J jnl
ATPdock: a template-based method for ATP-specific protein-ligand docking.
Bioinform.
Liang Rao, Ning-Xin Jia, Jun Hu, Dong-Jun Yu, Gui-Jun Zhang
2022 J jnl
Accurate flexible refinement for atomic-level protein structure using cryo-EM density maps and deep learning.
Briefings Bioinform.
Biao Zhang, Dong Liu, Yang Zhang, Hong-Bin Shen, Gui-Jun Zhang
2022 J jnl
De novo Protein Structure Prediction by Coupling Contact With Distance Profile.
IEEE ACM Trans. Comput. Biol. Bioinform.
Chunxiang Peng, Xiao-Gen Zhou, Gui-Jun Zhang
2022 J jnl
DeepUMQA: ultrafast shape recognition-based protein model quality assessment using deep learning.
Bioinform.
Sai-Sai Guo, Jun Liu, Xiao-Gen Zhou, Gui-Jun Zhang
2022 J jnl
Protein-DNA Binding Residue Prediction via Bagging Strategy and Sequence-Based Cube-Format Feature.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jun Hu, Yan-Song Bai, Lin-Lin Zheng, Ning-Xin Jia, Dong-Jun Yu, Gui-Jun Zhang
2022 J jnl
Structural analogue-based protein structure domain assembly assisted by deep learning.
Bioinform.
Chunxiang Peng, Xiao-Gen Zhou, Yuhao Xia, Jun Liu, Minghua Hou, Gui-Jun Zhang
2021 J jnl
A de novo protein structure prediction by iterative partition sampling, topology adjustment and residue-level distance deviation optimization.
Bioinform.
Jun Liu, Kai-Long Zhao, Guang-Xing He, Liu-Jing Wang, Xiao-Gen Zhou, Gui-Jun Zhang
2021 J jnl
A sequential niche multimodal conformational sampling algorithm for protein structure prediction.
Bioinform.
Yuhao Xia, Chunxiang Peng, Xiao-Gen Zhou, Gui-Jun Zhang
2021 J jnl
MMpred: a distance-assisted multimodal conformation sampling for de novo protein structure prediction.
Bioinform.
Kai-Long Zhao, Jun Liu, Xiao-Gen Zhou, Jianzhong Su, Yang Zhang, Gui-Jun Zhang
2021 J jnl
Protein Structure Prediction Using Population-Based Algorithm Guided by Information Entropy.
IEEE ACM Trans. Comput. Biol. Bioinform.
Gui-Jun Zhang, Tengyu Xie, Xiao-Gen Zhou, Liu-Jing Wang, Jun Hu
2021 J jnl
TargetDBP+: Enhancing the Performance of Identifying DNA-Binding Proteins via Weighted Convolutional Features.
J. Chem. Inf. Model.
Jun Hu, Liang Rao, Yi-Heng Zhu, Gui-Jun Zhang, Dong-Jun Yu
2020 J jnl
CGLFold: a contact-assisted de novo protein structure prediction using global exploration and loop perturbation sampling algorithm.
Bioinform.
Jun Liu, Xiao-Gen Zhou, Yang Zhang, Gui-Jun Zhang
2020 J jnl
Secondary Structure and Contact Guided Differential Evolution for Protein Structure Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform.
Gui-Jun Zhang, Lai-Fa Ma, Xiao-Qi Wang, Xiaogen Zhou
2020 J jnl
TargetDBP: Accurate DNA-Binding Protein Prediction Via Sequence-Based Multi-View Feature Learning.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jun Hu, Xiaogen Zhou, Yi-Heng Zhu, Dong-Jun Yu, Gui-Jun Zhang
2020 J jnl
Two-Stage Distance Feature-based Optimization Algorithm for De novo Protein Structure Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform.
Gui-Jun Zhang, Xiao-Qi Wang, Lai-Fa Ma, Liu-Jing Wang, Jun Hu, Xiao-Gen Zhou
2020 J jnl
Underestimation-Assisted Global-Local Cooperative Differential Evolution and the Application to Protein Structure Prediction.
IEEE Trans. Evol. Comput.
Xiaogen Zhou, Chunxiang Peng, Jun Liu, Yang Zhang, Gui-Jun Zhang
2019 J jnl
Analysis of Hospitalizing Behaviors Based on Big Trajectory Data.
IEEE Trans. Comput. Soc. Syst.
Yongdong Wang, Dongwei Xu, Peng Peng, Qi Xuan, Gui-Jun Zhang
2019 J jnl
Differential Evolution With Underestimation-Based Multimutation Strategy.
IEEE Trans. Cybern.
Xiaogen Zhou, Gui-Jun Zhang
2018 J jnl
Guiding exploration in conformational feature space with Lipschitz underestimation for ab-initio protein structure prediction.
Comput. Biol. Chem.
Xiao-hu Hao, Gui-Jun Zhang, Xiaogen Zhou
2018 J jnl
Mutually unbiased special entangled bases with Schmidt number 2 in \({\mathbb {C}}^3 \otimes {\mathbb {C}}^{4k}\).
Quantum Inf. Process.
Yi-Fan Han, Gui-Jun Zhang, Xin-Lei Yong, Lingshan Xu, Yuan-Hong Tao
2018 J jnl
Unextendible maximally entangled bases in \({\mathbb {C}}^{pd}\otimes {\mathbb {C}}^{qd}\).
Quantum Inf. Process.
Gui-Jun Zhang, Yuan-Hong Tao, Yi-Fan Han, Xin-Lei Yong, Shao-Ming Fei
2017 J jnl
Abstract Convex Underestimation Assisted Multistage Differential Evolution.
IEEE Trans. Cybern.
Xiaogen Zhou, Gui-Jun Zhang
2017 J jnl
Enhancing Protein Conformational Space Sampling Using Distance Profile-Guided Differential Evolution.
IEEE ACM Trans. Comput. Biol. Bioinform.
Gui-Jun Zhang, Xiaogen Zhou, Xufeng Yu, Xiao-hu Hao, Li Yu
2016 J jnl
A Novel Method Using Abstract Convex Underestimation in Ab-Initio Protein Structure Prediction for Guiding Search in Conformational Feature Space.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiao-hu Hao, Gui-Jun Zhang, Xiaogen Zhou, Xufeng Yu
2016 J jnl
A novel differential evolution algorithm using local abstract convex underestimate strategy for global optimization.
Comput. Oper. Res.
Xiaogen Zhou, Gui-Jun Zhang, Xiao-hu Hao, Li Yu
2016 B conf
Differential evolution with multi-stage strategies for global optimization.
CEC
Xiaogen Zhou, Gui-Jun Zhang, Xiao-hu Hao, Li Yu, Dongwei Xu
2016 J jnl
Enhanced differential evolution using local Lipschitz underestimate strategy for computationally expensive optimization problems.
Appl. Soft Comput.
Xiaogen Zhou, Gui-Jun Zhang, Xiao-hu Hao, Dongwei Xu, Li Yu
2007 J jnl
Ant colony pattern search algorithms for unconstrained and bound constrained optimization.
Appl. Math. Comput.
Yuanjing Feng, Li Yu, Gui-Jun Zhang