Guergana K. Savova

51 papers A 1B 3Misc 5Journal 32Unranked 10

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	Assessing the Macro and Micro Effects of Random Seeds on Fine-Tuning Large Language Models. IJCNLP-AACL (Short Papers) Nghia Tuan Bui, Guergana K. Savova, Lijing Wang
2025	J	`jnl`	Beyond the Algorithm: A Field Guide to Deploying AI Agents in Clinical Practice. CoRR Jack Gallifant, Katherine C. Kellogg, Matt Butler, Amanda Centi, Shan Chen, Patrick F. Doyle, Sayon Dutta, Joyce Guo, Matthew J. Hadfield, Esther Hahyeon Kim, David E. Kozono, Hugo J. W. L. Aerts, Adam B. Landman, Raymond H. Mak, Rebecca Grochow Mishuris, Tanna L. Nelson, Guergana K. Savova, Elad Sharon, Benjamin C. Silverman, Umit Topaloglu, Jeremy L. Warner, Danielle S. Bitterman
2025	J	`jnl`	Large language models require a new form of oversight: capability-based monitoring. CoRR Katherine C. Kellogg, Bingyang Ye, Yifan Hu, Guergana K. Savova, Byron Wallace, Danielle S. Bitterman
2025	—	`conf`	WorldMedQA-V: a multilingual, multimodal medical examination dataset for multimodal language models evaluation. NAACL (Findings) João Matos, Shan Chen, Siena Placino, Yingya Li, Juan Carlos Climent Pardo, Daphna Idan, Takeshi Tohyama, David S. Restrepo, Luis Filipe Nakayama, Jose M. M. Pascual-Leone, Guergana K. Savova, Hugo J. W. L. Aerts, Leo Anthony Celi, An-Kwok Ian Wong, Danielle S. Bitterman, Jack Gallifant
2024	J	`jnl`	Adapting Abstract Meaning Representation Parsing to the Clinical Narrative - the SPRING THYME parser. CoRR Jon Z. Cai, Kristin Wright-Bettner, Martha Palmer, Guergana K. Savova, James H. Martin
2024	J	`jnl`	Evaluating the ChatGPT family of models for biomedical reasoning and classification. J. Am. Medical Informatics Assoc. Shan Chen, Yingya Li, Sheng Lu, Hoang Van, Hugo J. W. L. Aerts, Guergana K. Savova, Danielle S. Bitterman
2024	J	`jnl`	Large language models to identify social determinants of health in electronic health records. npj Digit. Medicine Marco Guevara, Shan Chen, Spencer Thomas, Tafadzwa L. Chaunzwa, Idalid Franco, Benjamin H. Kann, Shalini Moningi, Jack M. Qian, Madeleine Goldstein, Susan Harper, Hugo J. W. L. Aerts, Paul J. Catalano, Guergana K. Savova, Raymond H. Mak, Danielle S. Bitterman
2023	J	`jnl`	Evaluation of ChatGPT Family of Models for Biomedical Reasoning and Classification. CoRR Shan Chen, Yingya Li, Sheng Lu, Hoang Van, Hugo J. W. L. Aerts, Guergana K. Savova, Danielle S. Bitterman
2023	J	`jnl`	Large Language Models to Identify Social Determinants of Health in Electronic Health Records. CoRR Marco Guevara, Shan Chen, Spencer Thomas, Tafadzwa L. Chaunzwa, Idalid Franco, Benjamin H. Kann, Shalini Moningi, Jack M. Qian, Madeleine Goldstein, Susan Harper, Hugo J. W. L. Aerts, Guergana K. Savova, Raymond H. Mak, Danielle S. Bitterman
2023	J	`jnl`	Natural language processing to automatically extract the presence and severity of esophagitis in notes of patients undergoing radiotherapy. CoRR Shan Chen, Marco Guevara, Nicolas Ramirez, Arpi Murray, Jeremy L. Warner, Hugo J. W. L. Aerts, Timothy A. Miller, Guergana K. Savova, Raymond H. Mak, Danielle S. Bitterman
2023	J	`jnl`	The impact of using an AI chatbot to respond to patient messages. CoRR Shan Chen, Marco Guevara, Shalini Moningi, Frank Hoebers, Hesham Elhalawani, Benjamin H. Kann, Fallon E. Chipidza, Jonathan Leeman, Hugo J. W. L. Aerts, Timothy A. Miller, Guergana K. Savova, Raymond H. Mak, Maryam Lustberg, Majid Afshar, Danielle S. Bitterman
2020	J	`jnl`	Adverse drug event rates in pediatric pulmonary hypertension: a comparison of real-world data sources. J. Am. Medical Informatics Assoc. Alon Geva, Steven H. Abman, Shannon F. Manzi, Dunbar D. Ivy, Mary Mullen, John Griffin, Chen Lin, Guergana K. Savova, Kenneth D. Mandl
2019	J	`jnl`	Supervised methods to extract clinical events from cardiology reports in Italian. J. Biomed. Informatics Natalia Viani, Timothy A. Miller, Carlo Napolitano, Silvia G. Priori, Guergana K. Savova, Riccardo Bellazzi, Lucia Sacchi
2017	B	`conf`	Recurrent Neural Network Architectures for Event Extraction from Italian Medical Reports. AIME Natalia Viani, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Carlo Napolitano, Silvia G. Priori, Riccardo Bellazzi, Lucia Sacchi, Guergana K. Savova
2016	J	`jnl`	Multilayered temporal modeling for the clinical domain. J. Am. Medical Informatics Assoc. Chen Lin, Dmitriy Dligach, Timothy A. Miller, Steven Bethard, Guergana K. Savova
2016	Misc	`conf`	Natural Language Processing Working Group Pre-Symposium: Graduate Student Consortium and 'Hackathon'. AMIA Stéphane M. Meystre, Hongfang Liu, Rong Xu, Sivaram Arabandi, Kavishwar B. Wagholikar, Jon D. Patrick, Guergana K. Savova, Chunhua Weng, Pierre Zweigenbaum, Dina Demner-Fushman, Özlem Uzuner, Hua Xu
2015	J	`jnl`	Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record. J. Am. Medical Informatics Assoc. Chen Lin, Elizabeth W. Karlson, Dmitriy Dligach, Monica P. Ramirez, Timothy A. Miller, Huan Mo, Natalie S. Braggs, Andrew Cagan, Vivian S. Gainer, Joshua C. Denny, Guergana K. Savova
2015	—	`conf`	SemEval-2015 Task 14: Analysis of Clinical Text. SemEval@NAACL-HLT Noémie Elhadad, Sameer Pradhan, Sharon Lipsky Gorman, Suresh Manandhar, Wendy W. Chapman, Guergana K. Savova
2014	J	`jnl`	Discovering body site and severity modifiers in clinical texts. J. Am. Medical Informatics Assoc. Dmitriy Dligach, Steven Bethard, Lee Becker, Timothy Miller, Guergana K. Savova
2014	Misc	`conf`	Disease/Disorder Semantic Template Filling - Information Extraction Challenge in the ShARe/CLEF eHealth Evaluation Lab 2014. AMIA Sumithra Velupillai, Danielle L. Mowery, Lee M. Christensen, Noemie Elhadad, Sameer Pradhan, Guergana K. Savova, Wendy W. Chapman
2014	—	`conf`	Task 2: ShARe/CLEF eHealth Evaluation Lab 2014. CLEF (Working Notes) Danielle L. Mowery, Sumithra Velupillai, Brett R. South, Lee M. Christensen, David Martínez, Liadh Kelly, Lorraine Goeuriot, Noémie Elhadad, Sameer Pradhan, Guergana K. Savova, Wendy W. Chapman
2014	J	`jnl`	Temporal Annotation in the Clinical Domain. Trans. Assoc. Comput. Linguistics William F. Styler IV, Steven Bethard, Sean Finan, Martha Palmer, Sameer Pradhan, Piet C. de Groen, Bradley James Erickson, Timothy Miller, Chen Lin, Guergana K. Savova, James Pustejovsky
2013	J	`jnl`	A common type system for clinical natural language processing. J. Biomed. Semant. Stephen T. Wu, Vinod Kaggal, Dmitriy Dligach, James J. Masanz, Pei J. Chen, Lee Becker, Wendy Webber Chapman, Guergana K. Savova, Hongfang Liu, Christopher G. Chute
2013	Misc	`conf`	Discovering Time Expressions in Clinical Text. AMIA Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Sameer Pradhan, Chen Lin, Guergana K. Savova
2013	—	`conf`	Overview of the ShARe/CLEF eHealth Evaluation Lab 2013. CLEF Hanna Suominen, Sanna Salanterä, Sumithra Velupillai, Wendy Webber Chapman, Guergana K. Savova, Noemie Elhadad, Sameer Pradhan, Brett R. South, Danielle L. Mowery, Gareth J. F. Jones, Johannes Leveling, Liadh Kelly, Lorraine Goeuriot, David Martínez, Guido Zuccon
2013	—	`conf`	Task 1: ShARe/CLEF eHealth Evaluation Lab 2013. CLEF (Working Notes) Sameer Pradhan, Noémie Elhadad, Brett R. South, David Martínez, Lee M. Christensen, Amy Vogel, Hanna Suominen, Wendy W. Chapman, Guergana K. Savova
2013	—	`conf`	Task 2: ShARe/CLEF eHealth Evaluation Lab 2013. CLEF (Working Notes) Danielle L. Mowery, Brett R. South, Lee M. Christensen, Laura-Maria Murtola, Sanna Salanterä, Hanna Suominen, David Martínez, Noémie Elhadad, Sameer Pradhan, Guergana K. Savova, Wendy W. Chapman
2013	J	`jnl`	Towards comprehensive syntactic and semantic annotations of the clinical narrative. J. Am. Medical Informatics Assoc. Daniel Albright, Arrick Lanfranchi, Anwen Fredriksen, William F. Styler IV, Colin Warner, Jena D. Hwang, Jinho D. Choi, Dmitriy Dligach, Rodney D. Nielsen, James H. Martin, Wayne H. Ward, Martha Palmer, Guergana K. Savova
2012	J	`jnl`	A system for coreference resolution for the clinical narrative. J. Am. Medical Informatics Assoc. Jiaping Zheng, Wendy Webber Chapman, Timothy A. Miller, Chen Lin, Rebecca S. Crowley, Guergana K. Savova
2012	J	`jnl`	Anaphoric reference in clinical reports: Characteristics of an annotated corpus. J. Biomed. Informatics Wendy Webber Chapman, Guergana K. Savova, Jiaping Zheng, Melissa Tharp, Rebecca S. Crowley
2012	J	`jnl`	Automated discovery of drug treatment patterns for endocrine therapy of breast cancer within an electronic medical record. J. Am. Medical Informatics Assoc. Guergana K. Savova, Janet E. Olson, Sean P. Murphy, Victoria L. Cafourek, Fergus J. Couch, Matthew P. Goetz, James N. Ingle, Vera J. Suman, Christopher G. Chute, Richard M. Weinshilboum
2012	J	`jnl`	Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: The SHARPn project. J. Biomed. Informatics Susan Rea, Jyotishman Pathak, Guergana K. Savova, Thomas A. Oniki, Les Westberg, Calvin E. Beebe, Cui Tao, Craig G. Parker, Peter J. Haug, Stanley M. Huff, Christopher G. Chute
2011	J	`jnl`	Anaphoric relations in the clinical narrative: corpus creation. J. Am. Medical Informatics Assoc. Guergana K. Savova, Wendy Webber Chapman, Jiaping Zheng, Rebecca S. Crowley
2011	J	`jnl`	Coreference resolution: A review of general methodologies and applications in the clinical domain. J. Biomed. Informatics Jiaping Zheng, Wendy Webber Chapman, Rebecca S. Crowley, Guergana K. Savova
2011	J	`jnl`	Drug side effect extraction from clinical narratives of psychiatry and psychology patients. J. Am. Medical Informatics Assoc. Sunghwan Sohn, Jean-Pierre A. Kocher, Christopher G. Chute, Guergana K. Savova
2011	J	`jnl`	Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions. J. Am. Medical Informatics Assoc. Wendy Webber Chapman, Prakash M. Nadkarni, Lynette Hirschman, Leonard W. D'Avolio, Guergana K. Savova, Özlem Uzuner
2010	—	`conf`	An architecture for complex clinical question answering. IHI Rodney D. Nielsen, James J. Masanz, Philip V. Ogren, Wayne H. Ward, James H. Martin, Guergana K. Savova, Martha Palmer
2010	J	`jnl`	Discerning Tumor Status from Unstructured MRI Reports - Completeness of Information in Existing Reports and Utility of Automated Natural Language Processing. J. Digit. Imaging Lionel Tim-Ee Cheng, Jiaping Zheng, Guergana K. Savova, Bradley James Erickson
2010	J	`jnl`	Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease. J. Am. Medical Informatics Assoc. Iftikhar J. Kullo, Jin Fan, Jyotishman Pathak, Guergana K. Savova, Zeenat Ali, Christopher G. Chute
2010	J	`jnl`	Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications. J. Am. Medical Informatics Assoc. Guergana K. Savova, James J. Masanz, Philip V. Ogren, Jiaping Zheng, Sunghwan Sohn, Karin Kipper Schuler, Christopher G. Chute
2010	—	`conf`	Time-Oriented Question Answering from Clinical Narratives Using Semantic-Web Techniques. ISWC (2) Cui Tao, Harold R. Solbrig, Deepak K. Sharma, Wei-Qi Wei, Guergana K. Savova, Christopher G. Chute
2009	J	`jnl`	Automatically extracting cancer disease characteristics from pathology reports into a Disease Knowledge Representation Model. J. Biomed. Informatics Anni Coden, Guergana K. Savova, Igor L. Sominsky, Michael A. Tanenblatt, James J. Masanz, Karin Schuler, James W. Cooper, Wei Guan, Piet C. de Groen
2009	Misc	`conf`	Mayo Clinic Smoking Status Classification System: Extensions and Improvements. AMIA Sunghwan Sohn, Guergana K. Savova
2008	B	`conf`	Constructing Evaluation Corpora for Automated Clinical Named Entity Recognition. LREC Philip V. Ogren, Guergana K. Savova, Christopher G. Chute
2008	B	`conf`	System Evaluation on a Named Entity Corpus from Clinical Notes. LREC Karin Schuler, Vinod Kaggal, James J. Masanz, Philip V. Ogren, Guergana K. Savova
2008	J	`jnl`	Technical Brief: Mayo Clinic NLP System for Patient Smoking Status Identification. J. Am. Medical Informatics Assoc. Guergana K. Savova, Philip V. Ogren, Patrick H. Duffy, James D. Buntrock, Christopher G. Chute
2008	J	`jnl`	Word sense disambiguation across two domains: Biomedical literature and clinical notes. J. Biomed. Informatics Guergana K. Savova, Anni Coden, Igor L. Sominsky, Rie Johnson, Philip V. Ogren, Piet C. de Groen, Christopher G. Chute
2003	Misc	`conf`	A Data-Driven Approach for Extracting "the Most Specific Term" for Ontology Development. AMIA Guergana K. Savova, Marcelline R. Harris, Thomas M. Johnson, Serguei V. S. Pakhomov, Christopher G. Chute
2003	J	`jnl`	A term extraction tool for expanding content in the domain of functioning, disability, and health: proof of concept. J. Biomed. Informatics Marcelline R. Harris, Guergana K. Savova, Thomas M. Johnson, Christopher G. Chute
2003	A	`conf`	Designing for errors: similarities and differences of disfluency rates and prosodic characteristics across domains. INTERSPEECH Guergana K. Savova, Joan Bachenko
2003	—	`conf`	Prosodic features of four types of disfluencies. DiSS Guergana K. Savova, Joan Bachenko