Guanghua Xiao - RankMe

43 papers Misc 1Journal 38Unranked 4

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Advances in predicting omics profiles from imaging data. Briefings Bioinform. Alexa H. Beachum, Xue Xiao, Yuansheng Zhou, Qiwei Li, Guanghua Xiao, Lin Xu
2026	J	`jnl`	Deep reflective reasoning in interdependence constrained structured data extraction from clinical notes for digital health. CoRR Jingwei Huang, Kuroush Nezafati, Zhikai Chi, Ruichen Rong, Colin Treager, Tingyi Wanyan, Yueshuang Xu, Xiaowei Zhan, Patrick Leavey, Guanghua Xiao, Wenqi Shi, Yang Xie
2026	J	`jnl`	GNN-EGG: Graph neural network explanations via graph generation. Neurocomputing Art Taychameekiatchai, Liwei Jia, Zhikai Chi, Yueshuang Xu, Qin Zhou, Guanghua Xiao, Xiaowei Zhan
2026	J	`jnl`	MEDVISTAGYM: A Scalable Training Environment for Thinking with Medical Images via Tool-Integrated Reinforcement Learning. CoRR Meng Lu, Yuxing Lu, Yuchen Zhuang, Megan Mullins, Yang Xie, Guanghua Xiao, Charles Fleming, Wenqi Shi, Xuan Wang
2025	J	`jnl`	GAS-MIL: Group-Aggregative Selection Multi-Instance Learning for Ensemble of Foundation Models in Digital Pathology Image Analysis. CoRR Peiran Quan, Zifan Gu, Zhuo Zhao, Qin Zhou, Donghan M. Yang, Ruichen Rong, Yang Xie, Guanghua Xiao
2025	J	`jnl`	MedAgentGym: Training LLM Agents for Code-Based Medical Reasoning at Scale. CoRR Ran Xu, Yuchen Zhuang, Yishan Zhong, Yue Yu, Xiangru Tang, Hang Wu, May D. Wang, Peifeng Ruan, Donghan Yang, Tao Wang, Guanghua Xiao, Carl Yang, Yang Xie, Wenqi Shi
2025	J	`jnl`	SBDH-Reader: a large language model-powered method for extracting social and behavioral determinants of health from clinical notes. J. Am. Medical Informatics Assoc. Zifan Gu, Lesi He, Awais Naeem, Pui Man Chan, Asim Mohamed, Hafsa Khalil, Yujia Guo, Jingwei Huang, Ismael Villanueva-Miranda, Ying Ding, Wenqi Shi, Matthew E. Dupre, Guanghua Xiao, Eric D. Peterson, Yang Xie, Ann Marie Navar, Donghan M. Yang
2025	J	`jnl`	Scaling Agentic Reinforcement Learning for Tool-Integrated Reasoning in VLMs. CoRR Meng Lu, Ran Xu, Yi Fang, Wenxuan Zhang, Yue Yu, Gaurav Srivastava, Yuchen Zhuang, Mohamed Elhoseiny, Charles Fleming, Carl Yang, Zhengzhong Tu, Yang Xie, Guanghua Xiao, Hanrui Wang, Di Jin, Wenqi Shi, Xuan Wang
2024	J	`jnl`	A critical assessment of using ChatGPT for extracting structured data from clinical notes. npj Digit. Medicine Jingwei Huang, Donghan M. Yang, Ruichen Rong, Kuroush Nezafati, Colin Treager, Zhikai Chi, Shidan Wang, Xian Cheng, Yujia Guo, Laura J. Klesse, Guanghua Xiao, Eric D. Peterson, Xiaowei Zhan, Yang Xie
2024	J	`jnl`	BayeSMART: Bayesian clustering of multi-sample spatially resolved transcriptomics data. Briefings Bioinform. Yanghong Guo, Bencong Zhu, Chen Tang, Ruichen Rong, Ying Ma, Guanghua Xiao, Lin Xu, Qiwei Li
2024	J	`jnl`	Large language models enabled multiagent ensemble method for efficient EHR data labeling. CoRR Jingwei Huang, Kuroush Nezafati, Ismael Villanueva-Miranda, Zifan Gu, Ann Marie Navar, Tingyi Wanyan, Qin Zhou, Bo Yao, Ruichen Rong, Xiaowei Zhan, Guanghua Xiao, Eric D. Peterson, Donghan M. Yang, Yang Xie
2024	J	`jnl`	MetaNorm: incorporating meta-analytic priors into normalization of NanoString nCounter data. Bioinform. Jackson Barth, Yuqiu Yang, Guanghua Xiao, Xinlei Wang
2024	J	`jnl`	Navigating electronic health record accuracy by examination of sex incongruent conditions. J. Am. Medical Informatics Assoc. Ling Cai, Ralph J. Deberardinis, Xiaowei Zhan, Guanghua Xiao, Yang Xie
2024	J	`jnl`	Research on the hydraulic parameters and leak rate of natural gas flow in natural gas pipelines based on the methods of characteristic line and successive approximation. J. Comput. Methods Sci. Eng. Qingmin Hou, Guanghua Xiao, Fangmin Xu, Hassan Nasser Eddine
2024	—	`conf`	SegPath-YOLO: A High-Speed, High-Accuracy Pathology Image Segmentation and Tumor Microenvironment Feature Extraction Tool. BIBM Jia Yao, Ruichen Rong, Tao Wang, Guanghua Xiao
2023	J	`jnl`	Contrastive Learning with Dynamic Weighting and Jigsaw Augmentation for Brain Tumor Classification in MRI. Neural Process. Lett. Guanghua Xiao, Huibin Wang, Jie Shen, Zhe Chen, Zhen Zhang, Xiaomin Ge
2023	J	`jnl`	Unsupervised domain adaptation for nuclei segmentation: Adapting from hematoxylin & eosin stained slides to immunohistochemistry stained slides using a curriculum approach. Comput. Methods Programs Biomed. Shidan Wang, Ruichen Rong, Zifan Gu, Junya Fujimoto, Xiaowei Zhan, Yang Xie, Guanghua Xiao
2022	J	`jnl`	An Adaptive Hierarchical Concatenated Network With A Robust Loss Function For Image Denoising. J. Grid Comput. Guanghua Xiao, Huibin Wang, Jie Shen, Zhe Chen, Zhen Zhang
2022	J	`jnl`	SAFARI: shape analysis for AI-segmented images. BMC Medical Imaging Esteban Fernández, Shengjie Yang, Sy Han Chiou, Chul Moon, Cong Zhang, Bo Yao, Guanghua Xiao, Qiwei Li
2021	J	`jnl`	Assessing consistency across functional screening datasets in cancer cells. Bioinform. Ling Cai, Hongyu Liu, John D. Minna, Ralph J. Deberardinis, Guanghua Xiao, Yang Xie
2021	J	`jnl`	Bayesian modeling of spatial molecular profiling data via Gaussian process. Bioinform. Qiwei Li, Minzhe Zhang, Yang Xie, Guanghua Xiao
2021	J	`jnl`	Spatial molecular profiling: platforms, applications and analysis tools. Briefings Bioinform. Minzhe Zhang, Thomas Sheffield, Xiaowei Zhan, Qiwei Li, Donghan M. Yang, Yunguan Wang, Shidan Wang, Yang Xie, Tao Wang, Guanghua Xiao
2020	J	`jnl`	Discovering Clinically Meaningful Shape Features for the Analysis of Tumor Pathology Images. CoRR Esteban Fernández Morales, Cong Zhang, Guanghua Xiao, Chul Moon, Qiwei Li
2020	J	`jnl`	Predicting survival outcomes using topological features of tumor pathology images. CoRR Chul Moon, Qiwei Li, Guanghua Xiao
2020	J	`jnl`	VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning. PLoS Comput. Biol. Jiwoong Kim, David E. Greenberg, Reed Pifer, Shuang Jiang, Guanghua Xiao, Samuel A. Shelburne, Andrew Y. Koh, Yang Xie, Xiaowei Zhan
2019	J	`jnl`	A comparative study of rank aggregation methods for partial and top ranked lists in genomic applications. Briefings Bioinform. Xue Li, Xinlei Wang, Guanghua Xiao
2019	J	`jnl`	DIGREM: an integrated web-based platform for detecting effective multi-drug combinations. Bioinform. Minzhe Zhang, Sangin Lee, Bo Yao, Guanghua Xiao, Lin Xu, Yang Xie
2019	J	`jnl`	GeNeCK: a web server for gene network construction and visualization. BMC Bioinform. Minzhe Zhang, Qiwei Li, Donghyeon Yu, Bo Yao, Wei Guo, Yang Xie, Guanghua Xiao
2018	J	`jnl`	ConvPath: A Software Tool for Lung Adenocarcinoma Digital Pathological Image Analysis Aided by Convolutional Neural Network. CoRR Shidan Wang, Tao Wang, Lin Yang, Faliu Yi, Xin Luo, Yikun Yang, Adi F. Gazdar, Junya Fujimoto, Ignacio I. Wistuba, Bo Yao, ShinYi Lin, Yang Xie, Yousheng Mao, Guanghua Xiao
2018	Misc	`conf`	Deep integrative analysis for survival prediction. PSB Chenglong Huang, Albert Zhang, Guanghua Xiao
2018	J	`jnl`	Fused lasso regression for identifying differential correlations in brain connectome graphs. Stat. Anal. Data Min. Donghyeon Yu, Sang Han Lee, Johan Lim, Guanghua Xiao, Richard Cameron Craddock, Bharat B. Biswal
2018	J	`jnl`	Microvessel prediction in H&E Stained Pathology Images using fully convolutional neural networks. BMC Bioinform. Faliu Yi, Lin Yang, Shidan Wang, Lei Guo, Chenglong Huang, Yang Xie, Guanghua Xiao
2017	J	`jnl`	Enhanced construction of gene regulatory networks using hub gene information. BMC Bioinform. Donghyeon Yu, Johan Lim, Xinlei Wang, Faming Liang, Guanghua Xiao
2016	—	`conf`	Imaging-genetic data mapping for clinical outcome prediction via supervised conditional Gaussian graphical model. BIBM Xinliang Zhu, Jiawen Yao, Guanghua Xiao, Yang Xie, Jaime Rodriguez-Canales, Edwin R. Parra, Carmen Behrens, Ignacio I. Wistuba, Junzhou Huang
2016	—	`conf`	Lung cancer survival prediction from pathological images and genetic data - An integration study. ISBI Xinliang Zhu, Jiawen Yao, Xin Luo, Guanghua Xiao, Yang Xie, Adi F. Gazdar, Junzhou Huang
2015	—	`conf`	Computer-Assisted Diagnosis of Lung Cancer Using Quantitative Topology Features. MLMI Jiawen Yao, Dheeraj Ganti, Xin Luo, Guanghua Xiao, Yang Xie, Shirley Yan, Junzhou Huang
2013	J	`jnl`	A powerful Bayesian meta-analysis method to integrate multiple gene set enrichment studies. Bioinform. Min Chen, Miao Zang, Xinlei Wang, Guanghua Xiao
2013	J	`jnl`	Alterations in resting functional connectivity due to recent motor task. NeuroImage Kuang-Chi Tung, Jinsoo Uh, Deng Mao, Feng Xu, Guanghua Xiao, Hanzhang Lu
2013	J	`jnl`	SbacHTS: Spatial background noise correction for High-Throughput RNAi Screening. Bioinform. Rui Zhong, Min Soo Kim, Michael A. White, Yang Xie, Guanghua Xiao
2012	J	`jnl`	Probe mapping across multiple microarray platforms. Briefings Bioinform. Jeffrey D. Allen, Siling Wang, Min Chen, Luc Girard, John D. Minna, Yang Xie, Guanghua Xiao
2011	J	`jnl`	A Novel Approach to DNA Copy Number Data Segmentation. J. Bioinform. Comput. Biol. Siling Wang, Yuhang Wang, Yang Xie, Guanghua Xiao
2011	J	`jnl`	White matter cerebral blood flow is inversely correlated with structural and functional connectivity in the human brain. NeuroImage Sina Aslan, Hao Huang, Jinsoo Uh, Virendra Mishra, Guanghua Xiao, Matthias J. P. van Osch, Hanzhang Lu
2005	J	`jnl`	Gene Function Prediction by a Combined Analysis of Gene Expression Data and Protein-protein Interaction Data. J. Bioinform. Comput. Biol. Guanghua Xiao, Wei Pan