Gregory R. Grant

21 papers B 1Journal 20
YearRankTypeTitle / Venue / Authors
2025 J jnl
Generating correlated data for omics simulation.
PLoS Comput. Biol.
Jianing Yang, Gregory R. Grant, Thomas G. Brooks
2024 J jnl
BEERS2: RNA-Seq simulation through high fidelity
Briefings Bioinform.
Thomas G. Brooks, Nicholas F. Lahens, Antonijo Mrcela, Dimitra Sarantopoulou, Soumyashant Nayak, Amruta Naik, Shaon Sengupta, Peter S. Choi, Gregory R. Grant
2021 J jnl
Comparative evaluation of full-length isoform quantification from RNA-Seq.
BMC Bioinform.
Dimitra Sarantopoulou, Thomas G. Brooks, Soumyashant Nayak, Antonijo Mrcela, Nicholas F. Lahens, Gregory R. Grant
2018 J jnl
Outlier detection for improved differential splicing quantification from RNA-Seq experiments with replicates.
Bioinform.
Scott S. Norton, Jorge Vaquero-Garcia, Nicholas F. Lahens, Gregory R. Grant, Yoseph Barash
2017 J jnl
Histone posttranslational modifications predict specific alternative exon subtypes in mammalian brain.
PLoS Comput. Biol.
Qiwen Hu, Eun Ji Kim, Jian Feng, Gregory R. Grant, Elizabeth A. Heller
2015 J jnl
Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data.
Bioinform.
Katharina E. Hayer, Angel D. Pizarro, Nicholas F. Lahens, John B. Hogenesch, Gregory R. Grant
2013 J jnl
EuPathDB: The Eukaryotic Pathogen database.
Nucleic Acids Res.
Cristina Aurrecoechea, Ana Barreto, John Brestelli, Brian P. Brunk, Shon Cade, Ryan Doherty, Steve Fischer, Bindu Gajria, Xin Gao, Alan R. Gingle, Gregory R. Grant, Omar S. Harb, Mark Heiges, Sufen Hu, John Iodice, Jessica C. Kissinger, Eileen T. Kraemer, Wei Li, Deborah F. Pinney, Brian Pitts, David S. Roos, Ganesh Srinivasamoorthy, Christian J. Stoeckert Jr., Haiming Wang, Susanne Warrenfeltz
2011 J jnl
AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species.
Nucleic Acids Res.
Cristina Aurrecoechea, Ana Barreto, John Brestelli, Brian P. Brunk, Elisabet V. Caler, Steve Fischer, Bindu Gajria, Xin Gao, Alan R. Gingle, Gregory R. Grant, Omar S. Harb, Mark Heiges, John Iodice, Jessica C. Kissinger, Eileen T. Kraemer, Wei Li, Vishal Nayak, Cary Pennington, Deborah F. Pinney, Brian Pitts, David S. Roos, Ganesh Srinivasamoorthy, Christian J. Stoeckert Jr., Charles Treatman, Haiming Wang
2011 J jnl
Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).
Bioinform.
Gregory R. Grant, Michael H. Farkas, Angel D. Pizarro, Nicholas F. Lahens, Jonathan Schug, Brian P. Brunk, Christian J. Stoeckert Jr., John B. Hogenesch, Eric A. Pierce
2010 J jnl
EuPathDB: a portal to eukaryotic pathogen databases.
Nucleic Acids Res.
Cristina Aurrecoechea, John Brestelli, Brian P. Brunk, Steve Fischer, Bindu Gajria, Xin Gao, Alan R. Gingle, Gregory R. Grant, Omar S. Harb, Mark Heiges, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen T. Kraemer, Wei Li, John A. Miller, Vishal Nayak, Cary Pennington, Deborah F. Pinney, David S. Roos, Chris Ross, Ganesh Srinivasamoorthy, Christian J. Stoeckert Jr., Ryan Thibodeau, Charles Treatman, Haiming Wang
2010 J jnl
TriTrypDB: a functional genomic resource for the Trypanosomatidae.
Nucleic Acids Res.
Martin Aslett, Cristina Aurrecoechea, Matthew Berriman, John Brestelli, Brian P. Brunk, Mark Carrington, Daniel P. Depledge, Steve Fischer, Bindu Gajria, Xin Gao, Malcolm J. Gardner, Alan R. Gingle, Gregory R. Grant, Omar S. Harb, Mark Heiges, Christiane Hertz-Fowler, Robin Houston, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen T. Kraemer, Wei Li, Flora J. Logan, John A. Miller, Siddhartha Mitra, Peter J. Myler, Vishal Nayak, Cary Pennington, Isabelle Phan, Deborah F. Pinney, Gowthaman Ramasamy, Matthew B. Rogers, David S. Roos, Chris Ross, Dhileep Sivam, Deborah F. Smith, Ganesh Srinivasamoorthy, Christian J. Stoeckert Jr., Sandhya Subramanian, Ryan Thibodeau, Adrian Tivey, Charles Treatman, Giles Velarde, Haiming Wang
2009 J jnl
A flexible two-stage procedure for identifying gene sets that are differentially expressed.
Bioinform.
Ruth Heller, Elisabetta Manduchi, Gregory R. Grant, Warren J. Ewens
2009 J jnl
GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens
Nucleic Acids Res.
Cristina Aurrecoechea, John Brestelli, Brian P. Brunk, Jane M. Carlton, Jennifer Dommer, Steve Fischer, Bindu Gajria, Xin Gao, Alan R. Gingle, Gregory R. Grant, Omar S. Harb, Mark Heiges, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen T. Kraemer, Wei Li, John A. Miller, Hilary G. Morrison, Vishal Nayak, Cary Pennington, Deborah F. Pinney, David S. Roos, Chris Ross, Christian J. Stoeckert Jr., Steven Sullivan, Charles Treatman, Haiming Wang
2009 J jnl
PlasmoDB: a functional genomic database for malaria parasites.
Nucleic Acids Res.
Cristina Aurrecoechea, John Brestelli, Brian P. Brunk, Jennifer Dommer, Steve Fischer, Bindu Gajria, Xin Gao, Alan R. Gingle, Gregory R. Grant, Omar S. Harb, Mark Heiges, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen T. Kraemer, Wei Li, John A. Miller, Vishal Nayak, Cary Pennington, Deborah F. Pinney, David S. Roos, Chris Ross, Christian J. Stoeckert Jr., Charles Treatman, Haiming Wang
2005 J jnl
A practical false discovery rate approach to identifying patterns of differential expression in microarray data.
Bioinform.
Gregory R. Grant, Junmin Liu, Christian J. Stoeckert Jr.
2004 J jnl
RAD and the RAD Study-Annotator: an approach to collection, organization and exchange of all relevant information for high-throughput gene expression studies.
Bioinform.
Elisabetta Manduchi, Gregory R. Grant, H. He, Junmin Liu, Matthew D. Mailman, Angel D. Pizarro, Patricia L. Whetzel, Christian J. Stoeckert Jr.
2003 J jnl
PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data.
Nucleic Acids Res.
Amit Bahl, Brian P. Brunk, Jonathan Crabtree, Martin J. Fraunholz, Bindu Gajria, Gregory R. Grant, Hagai Ginsburg, Dinesh Gupta, Jessica C. Kissinger, Philip Labo, Li Li, Matthew D. Mailman, Arthur J. Milgram, David S. Pearson, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr., Patricia L. Whetzel
2002 J jnl
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished).
Nucleic Acids Res.
Amit Bahl, Brian P. Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr.
2000 J jnl
Bioinformatics - The Machine Learning Approach.
Comput. Chem.
Gregory R. Grant
2000 J jnl
Generation of patterns from gene expression data by assigning confidence to differentially expressed genes.
Bioinform.
Elisabetta Manduchi, Gregory R. Grant, Steven E. McKenzie, G. Christian Overton, Saul Surrey, Christian J. Stoeckert Jr.
1999 B conf
Significance testing for genomic mismatch scanning.
RECOMB
Gregory R. Grant, R. S. Spielman, Elisabetta Manduchi, Vivian G. Cheung, Warren J. Ewens