Gregory Butler

76 papers A* 1A 1B 7C 7Misc 3Journal 26Unranked 29
YearRankTypeTitle / Venue / Authors
2024 J jnl
Ion channel classification through machine learning and protein language model embeddings.
J. Integr. Bioinform.
Hamed Ghazikhani, Gregory Butler
2023 J jnl
Enhanced identification of membrane transport proteins: a hybrid approach combining ProtBERT-BFD and convolutional neural networks.
J. Integr. Bioinform.
Hamed Ghazikhani, Gregory Butler
2022 — conf
A Study on the Application of Protein Language Models in the Analysis of Membrane Proteins.
DCAI (2)
Hamed Ghazikhani, Gregory Butler
2022 C conf
Predicting the specific substrate for transmembrane transport proteins using BERT language model.
CIBCB
Sima Ataei, Gregory Butler
2022 — conf
TooT-BERT-C: A study on discriminating ion channels from membrane proteins based on the primary sequence's contextual representation from BERT models.
ICBRA
Hamed Ghazikhani, Gregory Butler
2022 C conf
TooT-BERT-M: Discriminating Membrane Proteins from Non-Membrane Proteins using a BERT Representation of Protein Primary Sequences.
CIBCB
Hamed Ghazikhani, Gregory Butler
2022 Misc conf
TooT-BERT-T: A BERT Approach on Discriminating Transport Proteins from Non-transport Proteins.
PACBB
Hamed Ghazikhani, Gregory Butler
2020 J jnl
BENIN: Biologically enhanced network inference.
J. Bioinform. Comput. Biol.
Stephanie Kamgnia Wonkap, Gregory Butler
2020 J jnl
Integrative approach for detecting membrane proteins.
BMC Bioinform.
Munira Alballa, Gregory Butler
2020 J jnl
TooT-T: discrimination of transport proteins from non-transport proteins.
BMC Bioinform.
Munira Alballa, Gregory Butler
2020 — conf
TportHMM: Predicting the substrate class of transmembrane transport proteins using profile Hidden Markov Models.
BIBM
Shiva Shamloo, Qing Ye, Gregory Butler
2019 — conf
Ontology-based transporter substrate annotation for benchmark datasets.
BIBM
Munira Alballa, Gregory Butler
2017 C conf
SynAPhy and SynAVal: Mining a Synteny-Similarity Graph to Resolve Orthology of Proteins in Fungal Genomes.
BIBE
Christine Kehyayan, Gregory Butler
2015 — conf
Computation for Genomics Knowledge Discovery.
SE4HPCS@ICSE
Gregory Butler
2015 J jnl
mycoCLAP, the database for characterized lignocellulose-active proteins of fungal origin: resource and text mining curation support.
Database J. Biol. Databases Curation
Kimchi Strasser, Erin McDonnell, Carol Nyaga, Min Wu, Sherry Wu, Hayda Almeida, Marie-Jean Meurs, Leila Kosseim, Justin Powlowski, Gregory Butler, Adrian Tsang
2014 J jnl
A review of genomic data warehousing systems.
Briefings Bioinform.
Thomas Triplet, Gregory Butler
2014 J jnl
SnowyOwl: accurate prediction of fungal genes by using RNA-Seq and homology information to select among ab initio models.
BMC Bioinform.
Ian Reid, Nicholas O'Toole, Omar Zabaneh, Reza Nourzadeh, Mahmoud Dahdouli, Mostafa Abdellateef, Paul M. K. Gordon, Jung Soh, Gregory Butler, Christoph W. Sensen, Adrian Tsang
2013 Misc conf
BenchDW: a generic framework for biological data warehouse benchmarking.
SAC
Thomas Triplet, Gregory Butler
2012 J jnl
The EnzymeTracker: an open-source laboratory information management system for sample tracking.
BMC Bioinform.
Thomas Triplet, Gregory Butler
2011 — conf
An integrative approach to infer regulation programs in a transcription regulatory module network.
BCB
Jianlong Qi, Tom Michoel, Gregory Butler
2011 — conf
Applying Linear Models to Learn Regulation Programs in a Transcription Regulatory Module Network.
EvoBio
Jianlong Qi, Tom Michoel, Gregory Butler
2010 C conf
A regression tree-based Gibbs sampler to learn the regulation programs in a transcription regulatory module network.
CIBCB
Jianlong Qi, Tom Michoel, Gregory Butler
2010 C conf
Issues with the PipeAlign phylogenomics toolkit in identifying protein subfamilies.
CIBCB
Christine Kehyayan, Gregory Butler
2006 — conf
A Distributed Agent System upon Semantic Web Technologies to Provide Biological Data.
CSWWS
Farzad Kohantorabi, Gregory Butler, Christopher J. O. Baker
2006 — conf
Bayesian Learning for Feed-Forward Neural Network with Application to Proteomic Data: The Glycosylation Sites Detection of the Epidermal Growth Factor-Like Proteins Associated with Cancer as a Case Study.
Canadian AI
Alireza Shaneh, Gregory Butler
2005 J jnl
OrfPredictor: predicting protein-coding regions in EST-derived sequences.
Nucleic Acids Res.
Xiang Jia Min, Gregory Butler, Reginald Storms, Adrian Tsang
2005 J jnl
TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences.
Nucleic Acids Res.
Xiang Jia Min, Gregory Butler, Reginald Storms, Adrian Tsang
2004 — conf
A Prototype Tool for Use Case Refactoring.
ICEIS (3)
Shengbing Ren, Gregory Butler, Kexing Rui, Jian Xu, Wei Yu, Renhang Luo
2004 — conf
An Efficient B+-Tree Implementation in C++ Using the STL Style.
ICEIS (1)
Jingxue Zhou, Bin Nie, Gregory Butler
2004 C conf
Use Case Refactoring: A Tool and a Case Study.
APSEC
Jian Xu, Wei Yu, Kexing Rui, Gregory Butler
2004 — conf
WISH Query Composer.
ICEIS (1)
Vivien Liang, Gregory Butler
2003 — conf
Issues in Architectural Modeling and Evolution in the Know-It-All Case Study.
ECBS
Gregory Butler, Xin Shen, Lugang Xu
2003 — conf
Refactoring Use Case Models: A Case Study.
ICEIS (3)
Kexing Rui, Shengbing Ren, Gregory Butler
2003 — conf
Refactoring Use Case Models: The Metamodel.
ACSC
Kexing Rui, Gregory Butler
2003 — conf
Refactoring the Scenario Specification: A Message Sequence Chart Approach.
OOIS
Shengbing Ren, Kexing Rui, Gregory Butler
2002 B conf
Architectural Refactoring in Framework Evolution: A Case Study.
GPCE
Gregory Butler
2001 — conf
Cascaded refactoring for framework.
SSR
Gregory Butler, Lugang Xu
2001 — conf
Generative Programming.
ECOOP Workshops
Barbara Barth, Gregory Butler, Krzysztof Czarnecki, Ulrich W. Eisenecker
2001 A* conf
Generative Techniques for Product Lines.
ICSE
Gregory Butler, Don S. Batory, Krzysztof Czarnecki, Ulrich W. Eisenecker
2001 — ed.
Generative and Component-Based Software Engineering, Second International Symposium, GCSE 2000, Erfurt, Germany, October 9-12, 2000, Revised Papers
GCSE
Gregory Butler, Stan Jarzabek
2000 J jnl
A framework for framework documentation.
ACM Comput. Surv.
Gregory Butler, Rudolf K. Keller, Hafedh Mili
2000 B conf
Three Improvements to the BLASTP Search of Genome Databases.
SSDBM
Shawn Delaney, Gregory Butler, Clement W. H. Lam, Larry H. Thiel
1999 — conf
Developing Frameworks by Aligning Requirements, Design, and Code.
ECOOP Workshops
Gregory Butler
1999 Misc conf
Towards OM - An Object-Oriented Implementation of Mantra.
Australasian Database Conference
Gregory Butler, T. Kharma, O. Tjandra
1996 — conf
Document Recognition, Semantics, and Symbolic Reasoning in Reverse Engineering of Software.
AISMC
Gregory Butler, Peter Grogono, Rajjan Shinghal, Indra A. Tjandra
1996 — conf
Software Architectures for Computer Algebra: A Case Study.
DISCO
Gregory Butler
1995 J jnl
An Intelligent Tutoring System for the Dijkstra-Gries Methodology.
IEEE Trans. Software Eng.
Frank Ng, Gregory Butler, Judy Kay
1995 A conf
Analyzing the logical structure of data flow diagrams in software documents.
ICDAR
Gregory Butler, Peter Grogono, Rajjan Shinghal, Indra A. Tjandra
1995 J jnl
Easy Verification of Behavioural Subtyping in Common Cases.
Inf. Process. Lett.
Gregory Butler
1995 — conf
Formal Representation of Reusable Software Modules.
WCRE
Indra A. Tjandra, Gregory Butler
1995 B conf
Intelligent Mathematical Databases.
DASFAA
Gregory Butler
1995 — conf
Retrieving Information from Data Flow Diagrams.
WCRE
Gregory Butler, Peter Grogono, Rajjan Shinghal, Indra A. Tjandra
1994 J jnl
A Database of Groups of Prime-power Order.
Softw. Pract. Exp.
Gregory Butler, Sridhar S. Iyer, E. A. O'Brien
1994 — conf
Datalog and TwoGroups and C++.
AISMC
Gregory Butler
1994 — conf
The Preliminary Design of an Object-Oriented Framework for Combinatorial Enumeration.
COODBSE
Gregory Butler, Clement W. H. Lam
1993 J jnl
On Holt's Algorithm.
J. Symb. Comput.
Gregory Butler, John J. Cannon
1993 C conf
Specialised Theorem-Proving in an Intelligent Tutoring System for the Dijkstra-Gries Programming Methodology.
ICCI
Frank Ng, Gregory Butler
1993 J jnl
The Transitive Groups of Degree Fourteen and Fifteen.
J. Symb. Comput.
Gregory Butler
1992 B conf
Experimental Comparison of Algorithms for Sylow Subgroups.
ISSAC
Gregory Butler
1992 — conf
The Progress Towards an Intelligent Assistent - A Discussion Paper.
AISMC
Gregory Butler
1991 B conf
A Deductive Database of the Groups of Order Dividing 128.
ISSAC
Gregory Butler, Sridhar S. Iyer, Susan H. Ley
1991 J jnl
Computing Sylow Subgroups of Permutation Groups Using Homomorphic Images of Centralizers.
J. Symb. Comput.
Gregory Butler, John J. Cannon
1991 — book
Fundamental Algorithms for Permutation Groups
Gregory Butler
1991 — conf
Implementing Some Algorithms of Kantor.
AAECC
Gregory Butler
1991 J jnl
Towards a deductive database for small simple groups.
SIGSAM Bull.
Gregory Butler, Sridhar S. Iyer
1990 B conf
Deductive Mathematical Databases - A Case Study.
SSDBM
Gregory Butler, Sridhar S. Iyer
1990 — conf
The Design of Cayley - a Language for Modern Algebra.
DISCO
Gregory Butler, John J. Cannon
1989 J jnl
Computing in Permutation and Matrix Groups III: Sylow Subgroups.
J. Symb. Comput.
Gregory Butler, John J. Cannon
1988 J jnl
A Proof of Holt's Algorithm.
J. Symb. Comput.
Gregory Butler
1988 B conf
Cayley, Version 4: The User Language.
ISSAC
Gregory Butler, John J. Cannon
1987 J jnl
The Suitability for Master/Slave Concurrency of Concurrent Euclid, Ada and Modula.
Softw. Pract. Exp.
Gregory Butler, Matthew J. Kendall
1985 J jnl
A General Backtrack Algorithm for the Isomorphism Problem of Combinatorial Objects.
J. Symb. Comput.
Gregory Butler, Clement W. H. Lam
1985 J jnl
An improvement to the centralizer algorithm for permutation groups.
SIGSAM Bull.
Gregory Butler
1985 J jnl
Effective Computation with Group Homomorphisms.
J. Symb. Comput.
Gregory Butler
1983 J jnl
Computing Normalizers in Permutation Groups.
J. Algorithms
Gregory Butler
1981 — conf
Double cosets and searching small groups.
SYMSACC
Gregory Butler