Greg Finak

12 papers Journal 12
YearRankTypeTitle / Venue / Authors
2025 J jnl
A General Framework for Comparing Embedding Visualizations Across Class-Label Hierarchies.
IEEE Trans. Vis. Comput. Graph.
Trevor Manz, Fritz Lekschas, Evan Greene, Greg Finak, Nils Gehlenborg
2021 J jnl
New interpretable machine-learning method for single-cell data reveals correlates of clinical response to cancer immunotherapy.
Patterns
Evan Greene, Greg Finak, Leonard A. D'Amico, Nina Bhardwaj, Candice D. Church, Chihiro Morishima, Nirasha Ramchurren, Janis M. Taube, Paul T. Nghiem, Martin A. Cheever, Steven P. Fling, Raphael Gottardo
2018 J jnl
Selective Clustering Annotated using Modes of Projections.
CoRR
Evan Greene, Greg Finak, Raphael Gottardo
2018 J jnl
ggCyto: next generation open-source visualization software for cytometry.
Bioinform.
Phu Van, Wenxin Jiang, Raphael Gottardo, Greg Finak
2015 J jnl
flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification.
Bioinform.
Mehrnoush Malek, Mohammad Jafar Taghiyar, Lauren Chong, Greg Finak, Raphael Gottardo, Ryan Remy Brinkman
2014 J jnl
Modeling Bi-modality Improves Characterization of Cell Cycle on Gene Expression in Single Cells.
PLoS Comput. Biol.
Andrew McDavid, Lucas Dennis, Patrick Danaher, Greg Finak, Michael Krouse, Alice Wang, Philippa Webster, Joseph Beechem, Raphael Gottardo
2014 J jnl
OpenCyto: An Open Source Infrastructure for Scalable, Robust, Reproducible, and Automated, End-to-End Flow Cytometry Data Analysis.
PLoS Comput. Biol.
Greg Finak, Jacob Frelinger, Wenxin Jiang, Evan W. Newell, John Ramey, Mark M. Davis, Spyros A. Kalams, Stephen C. De Rosa, Raphael Gottardo
2013 J jnl
Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments.
Bioinform.
Andrew McDavid, Greg Finak, Pratip K. Chattopadhyay, Maria Dominguez, Laurie Lamoreaux, Steven S. Ma, Mario Roederer, Raphael Gottardo
2012 J jnl
QUAliFiER: An automated pipeline for quality assessment of gated flow cytometry data.
BMC Bioinform.
Greg Finak, Wenxin Jiang, Jorge Pardo, Adam Asare, Raphael Gottardo
2010 J jnl
Optimizing Transformations for Automated, High Throughput Analysis of Flow Cytometry Data.
BMC Bioinform.
Greg Finak, Juan-Manuel Perez, Andrew Weng, Raphael Gottardo
2009 J jnl
Merging Mixture Components for Cell Population Identification in Flow Cytometry.
Adv. Bioinformatics
Greg Finak, Ali Bashashati, Ryan Remy Brinkman, Raphael Gottardo
2005 J jnl
BIAS: Bioinformatics Integrated Application Software.
Bioinform.
Greg Finak, N. Godin, Michael T. Hallett, François Pepin, Z. Rajabi, V. Srivastava, Z. Tang