Graziano Pesole

96 papers B 4C 1Journal 83Unranked 7
YearRankTypeTitle / Venue / Authors
2025 J jnl
REDInet: a temporal convolutional network-based classifier for A-to-I RNA editing detection harnessing million known events.
Briefings Bioinform.
Adriano Fonzino, Pietro Luca Mazzacuva, Adam Handen, Domenico Alessandro Silvestris, Annette Arnold, Riccardo Pecori, Graziano Pesole, Ernesto Picardi
2025 J jnl
kMetaShot: a fast and reliable taxonomy classifier for metagenome-assembled genomes.
Briefings Bioinform.
Giuseppe Defazio, Marco Antonio Tangaro, Graziano Pesole, Bruno Fosso
2023 J jnl
UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untranslated regions.
Nucleic Acids Res.
Claudio Lo Giudice, Federico Zambelli, Matteo Chiara, Giulio Pavesi, Marco Antonio Tangaro, Ernesto Picardi, Graziano Pesole
2022 J jnl
MetaCOXI: an integrated collection of metazoan mitochondrial cytochrome oxidase subunit-I DNA sequences.
Database J. Biol. Databases Curation
Bachir Balech, Anna Sandionigi, Marinella Marzano, Graziano Pesole, Monica Santamaria
2022 — conf
The Laniakea Dashboard and Storage Encryption Components: A Foundation for Developing On-Demand Cloud Services for Life Science.
ICWE Workshops
Marco Antonio Tangaro, Marica Antonacci, Pietro Mandreoli, Daniele Colombo, Nadina Foggetti, Giacinto Donvito, Graziano Pesole, Federico Zambelli
2021 J jnl
CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes.
Bioinform.
Matteo Chiara, Federico Zambelli, Marco Antonio Tangaro, Pietro Mandreoli, David Stephen Horner, Graziano Pesole
2021 J jnl
ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy.
Bioinform.
Marco Antonio Tangaro, Giuseppe Defazio, Bruno Fosso, Vito Flavio Licciulli, Giorgio Grillo, Giacinto Donvito, Enrico Lavezzo, Giacomo Baruzzo, Graziano Pesole, Monica Santamaria
2021 J jnl
Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service.
BMC Bioinform.
Marco Antonio Tangaro, Pietro Mandreoli, Matteo Chiara, Giacinto Donvito, Marica Antonacci, Antonio Parisi, Angelica Bianco, Angelo Romano, Daniela Manila Bianchi, Davide Cangelosi, Paolo Uva, Ivan Molineris, Vladimir Nosi, Raffaele A. Calogero, Luca Alessandrì, Elena Pedrini, Marina Mordenti, Emanuele Bonetti, Luca Sangiorgi, Graziano Pesole, Federico Zambelli
2021 J jnl
Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities.
Briefings Bioinform.
Matteo Chiara, Anna Maria D'Erchia, Carmela Gissi, Caterina Manzari, Antonio Parisi, Nicoletta Resta, Federico Zambelli, Ernesto Picardi, Giulio Pavesi, David Stephen Horner, Graziano Pesole
2021 J jnl
REDIportal: millions of novel A-to-I RNA editing events from thousands of RNAseq experiments.
Nucleic Acids Res.
Luigi Mansi, Marco Antonio Tangaro, Claudio Lo Giudice, Tiziano Flati, Eli Kopel, Amos Avraham Schaffer, Tiziana Castrignanò, Giovanni Chillemi, Graziano Pesole, Ernesto Picardi
2021 J jnl
Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR.
F1000Research
Robert M. Waterhouse, Anne-Françoise Adam-Blondon, Donat Agosti, Petr Baldrian, Bachir Balech, Erwan Le Corre, Robert P. Davey, Henrik Lantz, Graziano Pesole, Christian Quast, Frank Oliver Glöckner, Niels Raes, Anna Sandionigi, Monica Santamaria, Wouter Addink, Jiri Vohradsky, Amandine Nunes-Jorge, Nils Peder Willassen, Jerry Lanfear
2021 J jnl
VINYL: Variant prIoritizatioN bY survivaL analysis.
Bioinform.
Matteo Chiara, Pietro Mandreoli, Marco Antonio Tangaro, Anna Maria D'Erchia, Sandro Sorrentino, Cinzia Forleo, David Stephen Horner, Federico Zambelli, Graziano Pesole
2020 J jnl
Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data.
Briefings Bioinform.
Matteo Chiara, Federico Zambelli, Ernesto Picardi, David Stephen Horner, Graziano Pesole
2020 J jnl
ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community.
BMC Bioinform.
Tiziana Castrignanò, Silvia Gioiosa, Tiziano Flati, Mirko Cestari, Ernesto Picardi, Matteo Chiara, Maddalena Fratelli, Stefano Amente, Marco Cirilli, Marco Antonio Tangaro, Giovanni Chillemi, Graziano Pesole, Federico Zambelli
2020 J jnl
HPC-REDItools: a novel HPC-aware tool for improved large scale RNA-editing analysis.
BMC Bioinform.
Tiziano Flati, Silvia Gioiosa, Nicola Spallanzani, Ilario Tagliaferri, Maria Angela Diroma, Graziano Pesole, Giovanni Chillemi, Ernesto Picardi, Tiziana Castrignanò
2019 J jnl
Elucidating the editome: bioinformatics approaches for RNA editing detection.
Briefings Bioinform.
Maria Angela Diroma, Loredana Ciaccia, Graziano Pesole, Ernesto Picardi
2018 J jnl
ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences.
Nucleic Acids Res.
Monica Santamaria, Bruno Fosso, Flavio Licciulli, Bachir Balech, Ilaria Larini, Giorgio Grillo, Giorgio De Caro, Sabino Liuni, Graziano Pesole
2018 J jnl
Unbiased Taxonomic Annotation of Metagenomic Samples.
J. Comput. Biol.
Bruno Fosso, Graziano Pesole, Francesc Rosselló, Gabriel Valiente
2017 J jnl
MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data.
Bioinform.
Bruno Fosso, Monica Santamaria, Mattia D'Antonio, Domenica Lovero, Giacomo Corrado, Enrico Vizza, N. Pássaro, Anna Rosa Garbuglia, M. R. Capobianchi, Marco Crescenzi, Gabriel Valiente, Graziano Pesole
2017 J jnl
REDIportal: a comprehensive database of A-to-I RNA editing events in humans.
Nucleic Acids Res.
Ernesto Picardi, Anna Maria D'Erchia, Claudio Lo Giudice, Graziano Pesole
2017 — conf
Unbiased Taxonomic Annotation of Metagenomic Samples.
ISBRA
Bruno Fosso, Graziano Pesole, Francesc Rosselló, Gabriel Valiente
2015 J jnl
BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS.
BMC Bioinform.
Bruno Fosso, Monica Santamaria, Marinella Marzano, Daniel Alonso-Alemany, Gabriel Valiente, Giacinto Donvito, Alfonso Monaco, Pasquale Notarangelo, Graziano Pesole
2015 J jnl
MSA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain information.
Bioinform.
Bachir Balech, Saverio Vicario, Giacinto Donvito, Alfonso Monaco, Pasquale Notarangelo, Graziano Pesole
2014 J jnl
EasyCluster2: an improved tool for clustering and assembling long transcriptome reads.
BMC Bioinform.
Vitoantonio Bevilacqua, Nicola Pietroleonardo, Ely Ignazio Giannino, Fabio Stroppa, Domenico Simone, Graziano Pesole, Ernesto Picardi
2014 J jnl
MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing.
Bioinform.
Claudia Calabrese, Domenico Simone, Maria Angela Diroma, Mariangela Santorsola, Cristiano Guttà, Giuseppe Gasparre, Ernesto Picardi, Graziano Pesole, Marcella Attimonelli
2014 — conf
ODESSA: A high performance analysis pipeline for Ultra Deep targeted Exome Sequencing data.
HPCS
Mattia D'Antonio, Paolo D'Onorio De Meo, Tiziana Castrignanò, Giovanni Erbacci, Matteo Pallocca, Graziano Pesole
2013 — conf
Clustering and Assembling Large Transcriptome Datasets by EasyCluster2.
ICIC (3)
Vitoantonio Bevilacqua, Nicola Pietroleonardo, Ely Ignazio Giannino, Fabio Stroppa, Graziano Pesole, Ernesto Picardi
2013 J jnl
Motif discovery and transcription factor binding sites before and after the next-generation sequencing era.
Briefings Bioinform.
Federico Zambelli, Graziano Pesole, Giulio Pavesi
2013 J jnl
NGS-Trex: Next Generation Sequencing Transcriptome profile explorer.
BMC Bioinform.
Ilenia Boria, Lara Boatti, Graziano Pesole, Flavio Mignone
2013 J jnl
PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments.
Nucleic Acids Res.
Federico Zambelli, Graziano Pesole, Giulio Pavesi
2013 J jnl
REDItools: high-throughput RNA editing detection made easy.
Bioinform.
Ernesto Picardi, Graziano Pesole
2013 J jnl
SpliceAid-F: a database of human splicing factors and their RNA-binding sites.
Nucleic Acids Res.
Matteo Giulietti, Francesco Piva, Mattia D'Antonio, Paolo D'Onorio De Meo, Daniele Paoletti, Tiziana Castrignanò, Anna Maria D'Erchia, Ernesto Picardi, Federico Zambelli, Giovanni Principato, Giulio Pavesi, Graziano Pesole
2013 J jnl
WEP: a high-performance analysis pipeline for whole-exome data.
BMC Bioinform.
Mattia D'Antonio, Paolo D'Onorio De Meo, Daniele Paoletti, Berardino Elmi, Matteo Pallocca, Nico Sanna, Ernesto Picardi, Graziano Pesole, Tiziana Castrignanò
2012 J jnl
Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets.
Nucleic Acids Res.
Federico Zambelli, Gian Marco Prazzoli, Graziano Pesole, Giulio Pavesi
2012 J jnl
Editorial.
Briefings Bioinform.
Gabriel Valiente, Graziano Pesole
2012 J jnl
MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa.
Nucleic Acids Res.
Paolo D'Onorio De Meo, Mattia D'Antonio, Francesca Griggio, Renato Lupi, Massimiliano Borsani, Giulio Pavesi, Tiziana Castrignanò, Graziano Pesole, Carmela Gissi
2012 J jnl
PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text.
BMC Bioinform.
Yuri Pirola, Raffaella Rizzi, Ernesto Picardi, Graziano Pesole, Gianluca Della Vedova, Paola Bonizzoni
2012 J jnl
Reference databases for taxonomic assignment in metagenomics.
Briefings Bioinform.
Monica Santamaria, Bruno Fosso, Arianna Consiglio, Giorgio De Caro, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Marinella Marzano, Daniel Alonso-Alemany, Gabriel Valiente, Graziano Pesole
2011 J jnl
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing.
Nucleic Acids Res.
Pier Luigi Martelli, Mattia D'Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna Maria D'Erchia, Paolo D'Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole
2011 J jnl
ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments.
Bioinform.
Ernesto Picardi, Mattia D'Antonio, Danilo Carrabino, Tiziana Castrignanò, Graziano Pesole
2010 J jnl
Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing.
Briefings Bioinform.
David Stephen Horner, Giulio Pavesi, Tiziana Castrignanò, Paolo D'Onorio De Meo, Sabino Liuni, Michael Sammeth, Ernesto Picardi, Graziano Pesole
2010 — conf
New Tools for Expression Alternative Splicing Validation.
ICIC (3)
Vitoantonio Bevilacqua, Ernesto Picardi, Graziano Pesole, Daniele Ranieri, Vincenzo Stola, Vito Renò
2010 J jnl
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.
Nucleic Acids Res.
Giorgio Grillo, Antonio Turi, Flavio Licciulli, Flavio Mignone, Sabino Liuni, Sandro Banfi, Vincenzo Alessandro Gennarino, David Stephen Horner, Giulio Pavesi, Ernesto Picardi, Graziano Pesole
2009 J jnl
Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics.
BMC Bioinform.
Matteo Re, Graziano Pesole, David Stephen Horner
2009 J jnl
Detecting Alternative Gene Structures from Spliced ESTs: A Computational Approach.
J. Comput. Biol.
Paola Bonizzoni, Giancarlo Mauri, Graziano Pesole, Ernesto Picardi, Yuri Pirola, Raffaella Rizzi
2009 J jnl
EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data.
BMC Bioinform.
Ernesto Picardi, Flavio Mignone, Graziano Pesole
2009 J jnl
Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes.
Nucleic Acids Res.
Federico Zambelli, Graziano Pesole, Giulio Pavesi
2009 J jnl
Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements.
BMC Bioinform.
Teresa Maria Creanza, David Stephen Horner, Annarita D'Addabbo, Rosalia Maglietta, Flavio Mignone, Nicola Ancona, Graziano Pesole
2008 J jnl
ASPicDB: A database resource for alternative splicing analysis.
Bioinform.
Tiziana Castrignanò, Mattia D'Antonio, Anna Anselmo, Danilo Carrabino, A. D'Onorio De Meo, Anna Maria D'Erchia, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Alberto Riva, Raffaella Rizzi, Paola Bonizzoni, Graziano Pesole
2008 J jnl
Bioinformatics in Italy: BITS2007, the fourth annual meeting of the Italian Society of Bioinformatics.
BMC Bioinform.
Graziano Pesole, Manuela Helmer-Citterich
2008 J jnl
Correlated substitution analysis and the prediction of amino acid structural contacts.
Briefings Bioinform.
David Stephen Horner, Walter Pirovano, Graziano Pesole
2008 B conf
GenePC and ASPIC Integrate Gene Predictions with Expressed Sequence Alignments To Predict Alternative Transcripts.
APBC
Tyler S. Alioto, Roderic Guigó, Ernesto Picardi, Graziano Pesole
2008 B conf
HT-RLS: High-Throughput Web Tool for Analysis of DNA Microarray Data Using RLS classifiers.
CCGRID
Paolo D'Onorio De Meo, Danilo Carrabino, Mattia D'Antonio, Annarita D'Addabbo, Sabino Liuni, Flavio Mignone, Graziano Pesole, Nicola Ancona
2007 J jnl
A high performance grid-web service framework for the identification of 'conserved sequence tags'.
Future Gener. Comput. Syst.
Paolo D'Onorio De Meo, Danilo Carrabino, Nico Sanna, Tiziana Castrignanò, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Matteo Re, Flavio Mignone, Graziano Pesole
2007 J jnl
Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics.
BMC Bioinform.
Rita Casadio, Manuela Helmer-Citterich, Graziano Pesole
2007 J jnl
Selection of relevant genes in cancer diagnosis based on their prediction accuracy.
Artif. Intell. Medicine
Rosalia Maglietta, Annarita D'Addabbo, Ada Piepoli, Francesco Perri, Sabino Liuni, Graziano Pesole, Nicola Ancona
2007 J jnl
Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data.
Bioinform.
Rosalia Maglietta, Ada Piepoli, Domenico Catalano, Piepoli Licciulli, Massimo Carella, Sabino Liuni, Graziano Pesole, Francesco Perri, Nicola Ancona
2007 J jnl
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences.
BMC Bioinform.
Giulio Pavesi, Federico Zambelli, Graziano Pesole
2007 J jnl
p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining
BMC Bioinform.
Elisabetta Sbisà, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Antonio Turi, Sabino Liuni, Graziano Pesole, Anna De Grassi, Mariano Francesco Caratozzolo, Anna Maria D'Erchia, Beatriz Navarro, Apollonia Tullo, Cecilia Saccone, Andreas Gisel
2006 J jnl
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization.
Nucleic Acids Res.
Tiziana Castrignanò, Raffaella Rizzi, Ivano Giuseppe Talamo, Paolo D'Onorio De Meo, Anna Anselmo, Paola Bonizzoni, Graziano Pesole
2006 B conf
Classification error as a measure of gene relevance in cancer diagnosis.
IJCNN
Rosalia Maglietta, Annarita D'Addabbo, Ada Piepoli, Francesco Perri, Sabino Liuni, Graziano Pesole, Nicola Ancona
2006 J jnl
GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.
Bioinform.
Tiziana Castrignanò, Paolo D'Onorio De Meo, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Ivano Giuseppe Talamo, Graziano Pesole
2006 J jnl
MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes.
Nucleic Acids Res.
Giulio Pavesi, Paolo Mereghetti, Federico Zambelli, Marco Stefani, Giancarlo Mauri, Graziano Pesole
2006 J jnl
On the statistical assessment of classifiers using DNA microarray data.
BMC Bioinform.
Nicola Ancona, Rosalia Maglietta, Ada Piepoli, Annarita D'Addabbo, R. Cotugno, M. Savino, Sabino Liuni, Massimo Carella, Graziano Pesole, Francesco Perri
2005 J jnl
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences.
BMC Bioinform.
Paola Bonizzoni, Raffaella Rizzi, Graziano Pesole
2005 J jnl
DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes.
Nucleic Acids Res.
Angelo Boccia, Mauro Petrillo, Diego di Bernardo, Alessandro Guffanti, Flavio Mignone, Stefano Confalonieri, Lucilla Luzi, Graziano Pesole, Giovanni Paolella, Andrea Ballabio, Sandro Banfi
2005 J jnl
Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society.
BMC Bioinform.
Manuela Helmer-Citterich, Rita Casadio, Alessandro Guffanti, Giancarlo Mauri, Luciano Milanesi, Graziano Pesole, Giorgio Valle, Cecilia Saccone
2005 J jnl
Regularized Least Squares Cancer Classifiers from DNA microarray data.
BMC Bioinform.
Nicola Ancona, Rosalia Maglietta, Annarita D'Addabbo, Sabino Liuni, Graziano Pesole
2005 — conf
SVM and RLS Models for Cancer Classification.
Computational Intelligence
Nicola Ancona, Annarita D'Addabbo, Sabino Liuni, Graziano Pesole, Rosalia Maglietta
2005 J jnl
UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.
Nucleic Acids Res.
Flavio Mignone, Giorgio Grillo, Flavio Licciulli, Michele Iacono, Sabino Liuni, Paul J. Kersey, Jorge Duarte, Cecilia Saccone, Graziano Pesole
2004 J jnl
An Algorithm for Finding Conserved Secondary Structure Motifs in Unaligned RNA Sequences.
J. Comput. Sci. Technol.
Giulio Pavesi, Giancarlo Mauri, Graziano Pesole
2004 J jnl
CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison.
Nucleic Acids Res.
Tiziana Castrignanò, Alessandro Canali, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Graziano Pesole
2004 J jnl
DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions.
Bioinform.
Andreas Gisel, Maria Panetta, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Cecilia Saccone, Graziano Pesole
2004 J jnl
In silico representation and discovery of transcription factor binding sites.
Briefings Bioinform.
Giulio Pavesi, Giancarlo Mauri, Graziano Pesole
2004 J jnl
WebVar: a resource for the rapid estimation of relative site variability from multiple sequence alignments.
Bioinform.
Flavio Mignone, David Stephen Horner, Graziano Pesole
2004 J jnl
Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes.
Nucleic Acids Res.
Giulio Pavesi, Paolo Mereghetti, Giancarlo Mauri, Graziano Pesole
2003 C conf
A Method to Detect Gene Structure and Alternative Splice Sites by Agreeing ESTs to a Genomic Sequence.
WABI
Paola Bonizzoni, Graziano Pesole, Raffaella Rizzi
2003 — book
Handbook of Comparative Genomics - Principles and Methodology.
Cecilia Saccone, Graziano Pesole
2003 J jnl
PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences.
Nucleic Acids Res.
Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Elisabetta Sbisà, Graziano Pesole
2003 B conf
Predicting Conserved Hairpin Motifs in Unaligned RNA Sequences.
ICTAI
Giulio Pavesi, Giancarlo Mauri, Graziano Pesole
2003 J jnl
The estimation of relative site variability among aligned homologous protein sequences.
Bioinform.
David Stephen Horner, Graziano Pesole
2002 J jnl
Evolutionary Dynamics of Mammalian MRNA Untranslated Regions by Comparative Analysis of Orthologous Human, Artiodactyl and Rodent Gene Pairs.
Comput. Chem.
Alessandra Larizza, Wojciech Makalowski, Graziano Pesole, Cecilia Saccone
2002 J jnl
MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002.
Nucleic Acids Res.
Marcella Attimonelli, Domenico Catalano, Carmela Gissi, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Monica Santamaria, Graziano Pesole, Cecilia Saccone
2002 J jnl
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002.
Nucleic Acids Res.
Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Flavio Mignone, Carmela Gissi, Cecilia Saccone
2001 — conf
An algorithm for finding signals of unknown length in DNA sequences.
ISMB (Supplement of Bioinformatics)
Giulio Pavesi, Giancarlo Mauri, Graziano Pesole
2001 J jnl
Methods for Pattern Discovery in Unaligned Biological Sequences.
Briefings Bioinform.
Giulio Pavesi, Giancarlo Mauri, Graziano Pesole
2000 J jnl
MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins.
Nucleic Acids Res.
Graziano Pesole, Carmela Gissi, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Marcella Attimonelli, Cecilia Saccone
2000 J jnl
PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance.
Bioinform.
Graziano Pesole, Sabino Liuni, Mark D'Souza
2000 J jnl
The Untranslated Regions of Eukaryotic MRNAs: Structure, Function, Evolution and Bioinformatic Tools for Their Analysis.
Briefings Bioinform.
Graziano Pesole, Giorgio Grillo, Alessandra Larizza, Sabino Liuni
2000 J jnl
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs.
Nucleic Acids Res.
Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Alessandra Larizza, Wojciech Makalowski, Cecilia Saccone
1999 J jnl
UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs.
Nucleic Acids Res.
Graziano Pesole, Sabino Liuni, Giorgio Grillo, Matilde Ippedico, Alessandra Larizza, Wojciech Makalowski, Cecilia Saccone
1998 J jnl
UTRdb: a specialized database of 5'- and 3'-untranslated regions of eukaryotic mRNAs.
Nucleic Acids Res.
Graziano Pesole, Sabino Liuni, Giorgio Grillo, Cecilia Saccone
1996 J jnl
CLEANUP: a fast computer program for removing redundancies from nucleotide sequence databases.
Comput. Appl. Biosci.
Giorgio Grillo, Marcella Attimonelli, Sabino Liuni, Graziano Pesole
1996 J jnl
Databases of MRNA Untranslated Regions for Metazoa.
Comput. Chem.
Graziano Pesole, Giorgio Grillo, Sabino Liuni
1993 J jnl
FASTPAT: a fast and efficient algorithm for string searching in DNA sequences.
Comput. Appl. Biosci.
N. Prunella, Sabino Liuni, Marcella Attimonelli, Graziano Pesole
1993 J jnl
SIMD parallelization of the WORDUP algorithm for detecting statistically significant patterns in DNA sequences.
Comput. Appl. Biosci.
Sabino Liuni, N. Prunella, Graziano Pesole, Tiziana D'Orazio, Ettore Stella, Arcangelo Distante