Graciela Gonzalez

61 papers A* 3A 2C 2Misc 10Journal 21Unranked 22

Year	Rank	Type	Title / Venue / Authors
2019	Misc	`conf`	Text Mining and Machine Learning for Precision Medicine. PSB Graciela Gonzalez, Zhiyong Lu, Robert Leaman, Davy Weissenbacher, Mary Regina Boland, Yong Chen, Jingcheng Du, Juliane Fluck, Casey S. Greene, John H. Holmes, Aditya Kashyap, Rikke Linnemann Nielsen, Zhengqing Ouyang, Sebastian Schaaf, Jaclyn N. Taroni, Cui Tao, Yuping Zhang, Hongfang Liu
2018	—	`conf`	A Rule-based Approach to Determining Pregnancy Timeframe from Contextual Social Media Postings. DH Masoud Rouhizadeh, Arjun Magge, Ari Z. Klein, Abeed Sarker, Graciela Gonzalez
2017	—	`conf`	CSaRUS-CNN at AMIA-2017 Tasks 1, 2: Under Sampled CNN for Text Classification. SMM4H@AMIA Arjun Magge, Matthew Scotch, Graciela Gonzalez
2017	—	`conf`	Detecting Personal Medication Intake in Twitter: An Annotated Corpus and Baseline Classification System. BioNLP Ari Z. Klein, Abeed Sarker, Masoud Rouhizadeh, Karen O'Connor, Graciela Gonzalez
2017	—	`conf`	HLP$@$UPenn at SemEval-2017 Task 4A: A simple, self-optimizing text classification system combining dense and sparse vectors. SemEval@ACL Abeed Sarker, Graciela Gonzalez
2017	J	`jnl`	Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research. Database J. Biol. Databases Curation Tasnia Tahsin, Davy Weissenbacher, Demetrius Jones-Shargani, Daniel Magee, Matteo Vaiente, Graciela Gonzalez, Matthew Scotch
2017	—	`conf`	Overview of the Second Social Media Mining for Health (SMM4H) Shared Tasks at AMIA 2017. SMM4H@AMIA Abeed Sarker, Graciela Gonzalez
2017	—	`ed.`	Proceedings of the 2nd Social Media Mining for Health Research and Applications Workshop co-located with the American Medical Informatics Association Annual Symposium (AMIA 2017), Washington D.C., United States, November 4, 2017. SMM4H@AMIA Abeed Sarker, Graciela Gonzalez
2017	J	`jnl`	Social media mining for identification and exploration of health-related information from pregnant women. CoRR Pramod Bharadwaj Chandrashekar, Arjun Magge, Abeed Sarker, Graciela Gonzalez
2016	J	`jnl`	A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records. J. Am. Medical Informatics Assoc. Tasnia Tahsin, Davy Weissenbacher, Robert Rivera, Rachel Beard, Mari Firago, Garrick L. Wallstrom, Matthew Scotch, Graciela Gonzalez
2016	—	`conf`	Automatic Prediction of Linguistic Decline in Writings of Subjects with Degenerative Dementia. HLT-NAACL Davy Weissenbacher, Travis A. Johnson, Laura Wojtulewicz, Amylou Dueck, Dona Locke, Richard J. Caselli, Graciela Gonzalez
2016	—	`conf`	Data, tools and resources for mining social media drug chatter. BioTxtM@COLING 2016 Abeed Sarker, Graciela Gonzalez
2016	—	`conf`	DiegoLab16 at SemEval-2016 Task 4: Sentiment Analysis in Twitter using Centroids, Clusters, and Sentiment Lexicons. SemEval@NAACL-HLT Abeed Sarker, Graciela Gonzalez
2016	Misc	`conf`	Finding Potentially Unsafe Nutritional Supplements from User Reviews with Topic Modeling. PSB Ryan Sullivan, Abeed Sarker, Karen O'Connor, Amanda Goodin, Mark Karlsrud, Graciela Gonzalez
2016	J	`jnl`	Mining the Web for Pharmacovigilance: the Case Study of Duloxetine and Venlafaxine. CoRR Abbas Chokor, Abeed Sarker, Graciela Gonzalez
2016	J	`jnl`	Recent Advances and Emerging Applications in Text and Data Mining for Biomedical Discovery. Briefings Bioinform. Graciela Gonzalez, Tasnia Tahsin, Britton C. Goodale, Anna C. Greene, Casey S. Greene
2015	J	`jnl`	Knowledge-driven geospatial location resolution for phylogeographic models of virus migration. Bioinform. Davy Weissenbacher, Tasnia Tahsin, Rachel Beard, Mari Figaro, Robert Rivera, Matthew Scotch, Graciela Gonzalez
2015	J	`jnl`	Portable automatic text classification for adverse drug reaction detection via multi-corpus training. J. Biomed. Informatics Abeed Sarker, Graciela Gonzalez
2015	Misc	`conf`	Session Introduction. Pacific Symposium on Biocomputing Graciela Gonzalez, Chitta Baral, Jeff Kiefer, Suengchan Kim, Jieping Ye
2014	—	`conf`	Natural Language Processing Methods for Enhancing Geographic Metadata for Phylogeography of Zoonotic Viruses. BioNLP@ACL Tasnia Tahsin, Robert Rivera, Rachel Beard, Rob Lauder, Davy Weissenbacher, Matthew Scotch, Garrick L. Wallstrom, Graciela Gonzalez
2014	J	`jnl`	Overview of the gene ontology task at BioCreative IV. Database J. Biol. Databases Curation Yuqing Mao, Kimberly Van Auken, Donghui Li, Cecilia N. Arighi, Peter McQuilton, G. Thomas Hayman, Susan Tweedie, Mary L. Schaeffer, Stanley J. F. Laulederkind, Shur-Jen Wang, Julien Gobeill, Patrick Ruch, Anh Tuan Luu, Jung-Jae Kim, Jung-Hsien Chiang, Yu-De Chen, Chia-Jung Yang, Hongfang Liu, Dongqing Zhu, Yanpeng Li, Hong Yu, Ehsan Emadzadeh, Graciela Gonzalez, Jian-Ming Chen, Hong-Jie Dai, Zhiyong Lu
2014	Misc	`conf`	Session introduction. Pacific Symposium on Biocomputing Graciela Gonzalez, Kevin Bretonnel Cohen, Robert Leaman, Casey S. Greene, Nigam Shah, Maricel G. Kann, Jieping Ye
2014	Misc	`conf`	Text Classification towards Detecting Misdiagnosis of an Epilepsy Syndrome in a Pediatric Population. AMIA Ryan Sullivan, Robert Yao, Randa Jarar, Jeffrey Buchhalter, Graciela Gonzalez
2013	Misc	`conf`	Session introduction. Pacific Symposium on Biocomputing Graciela Gonzalez, Kevin Bretonnel Cohen, Casey S. Greene, Udo Hahn, Maricel G. Kann, Robert Leaman, Nigam Shah, Jieping Ye
2012	—	`conf`	Automatic Approaches for Gene-Drug Interaction Extraction from Biomedical Text: Corpus and Comparative Evaluation. BioNLP@HLT-NAACL Nate Sutton, Laura Wojtulewicz, Neel Mehta, Graciela Gonzalez
2012	J	`jnl`	Enhancing clinical concept extraction with distributional semantics. J. Biomed. Informatics Siddhartha Jonnalagadda, Trevor Cohen, Stephen T. Wu, Graciela Gonzalez
2012	J	`jnl`	Incremental Information Extraction Using Relational Databases. IEEE Trans. Knowl. Data Eng. Luis Tari, Phan Huy Tu, Jörg Hakenberg, Yi Chen, Tran Cao Son, Graciela Gonzalez, Chitta Baral
2012	—	`conf`	Proposed Ontology for Seizure and Epilepsy. ICBO Robert Yao, Jeffrey Buchhalter, Graciela Gonzalez
2011	—	`conf`	Applications for a Translational Biomedical Ontology Model. ICBO Robert Yao, Graciela Gonzalez
2011	J	`jnl`	BioSimplify: an open source sentence simplification engine to improve recall in automatic biomedical information extraction CoRR Siddhartha Jonnalagadda, Graciela Gonzalez
2011	J	`jnl`	Biomedical Informatics in Translational Research, Hai Hu, Richard J. Mural, Michael N. Liebman (Eds.). Artech House (2008). J. Biomed. Informatics Graciela Gonzalez
2011	J	`jnl`	Enhancing phylogeography by improving geographical information from GenBank. J. Biomed. Informatics Matthew Scotch, Indra Neil Sarkar, Changjiang Mei, Robert Leaman, Kei-Hoi Cheung, Pierina Ortiz, Ashutosh Singraur, Graciela Gonzalez
2011	—	`conf`	Evaluating Distributional Semantic and Feature Selection for Extracting Relationships from Biological Text. ICMLA (2) Ehsan Emadzadeh, Siddhartha Jonnalagadda, Graciela Gonzalez
2011	—	`conf`	The DIEGO Lab Graph Based Gene Normalization System. ICMLA (2) Ryan Sullivan, Robert Leaman, Graciela Gonzalez
2011	J	`jnl`	The GNAT library for local and remote gene mention normalization. Bioinform. Jörg Hakenberg, Martin Gerner, Maximilian Haeussler, Illés Solt, Conrad Plake, Michael Schroeder, Graciela Gonzalez, Goran Nenadic, Casey M. Bergman
2011	J	`jnl`	The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinform. Martin Krallinger, Miguel Vazquez, Florian Leitner, David Salgado, Andrew Chatr-aryamontri, Andrew G. Winter, Livia Perfetto, Leonardo Briganti, Luana Licata, Marta Iannuccelli, Luisa Castagnoli, Gianni Cesareni, Mike Tyers, Gerold Schneider, Fabio Rinaldi, Robert Leaman, Graciela Gonzalez, Sérgio Matos, Sun Kim, W. John Wilbur, Luis M. Rocha, Hagit Shatkay, Ashish V. Tendulkar, Shashank Agarwal, Feifan Liu, Xinglong Wang, Rafal Rak, Keith Noto, Charles Elkan, Zhiyong Lu
2011	Misc	`conf`	Towards Integrative Gene Prioritization in Alzheimer's Disease. Pacific Symposium on Biocomputing Jang Lee, Graciela Gonzalez
2010	C	`conf`	A Distributional Semantics Approach to Simultaneous Recognition of Multiple Classes of Named Entities. CICLing Siddhartha Jonnalagadda, Robert Leaman, Trevor Cohen, Graciela Gonzalez
2010	J	`jnl`	Efficient Extraction of Protein-Protein Interactions from Full-Text Articles. IEEE ACM Trans. Comput. Biol. Bioinform. Jörg Hakenberg, Robert Leaman, Nguyen Ha Vo, Siddhartha Jonnalagadda, Ryan Sullivan, Christopher Miller, Luis Tari, Chitta Baral, Graciela Gonzalez
2010	A*	`conf`	GenerIE: Information extraction using database queries. ICDE Luis Tari, Phan Huy Tu, Jörg Hakenberg, Yi Chen, Tran Cao Son, Graciela Gonzalez, Chitta Baral
2010	J	`jnl`	Sentence Simplification Aids Protein-Protein Interaction Extraction CoRR Siddhartha Jonnalagadda, Graciela Gonzalez
2010	J	`jnl`	Towards Effective Sentence Simplification for Automatic Processing of Biomedical Text CoRR Siddhartha Jonnalagadda, Luis Tari, Jörg Hakenberg, Chitta Baral, Graciela Gonzalez
2010	—	`conf`	Towards Internet-Age Pharmacovigilance: Extracting Adverse Drug Reactions from User Posts in Health-Related Social Networks. BioNLP@ACL Robert Leaman, Laura Wojtulewicz, Ryan Sullivan, Annie Skariah, Jian Yang, Graciela Gonzalez
2009	—	`conf`	Molecular event extraction from Link Grammar parse trees. BioNLP@HLT-NAACL (Shared Task) Jörg Hakenberg, Illés Solt, Domonkos Tikk, Luis Tari, Astrid Rheinländer, Quang Long Nguyen, Graciela Gonzalez, Ulf Leser
2009	Misc	`conf`	Querying Parse Tree Database of Medline Text to Synthesize User-Specific Biomolecular Networks. Pacific Symposium on Biocomputing Luis Tari, Jörg Hakenberg, Graciela Gonzalez, Chitta Baral
2009	—	`conf`	Towards Effective Sentence Simplification for Automatic Processing of Biomedical Text. HLT-NAACL (Short Papers) Siddhartha Jonnalagadda, Luis Tari, Jörg Hakenberg, Chitta Baral, Graciela Gonzalez
2008	Misc	`conf`	BANNER: An Executable Survey of Advances in Biomedical Named Entity Recognition. Pacific Symposium on Biocomputing Robert Leaman, Graciela Gonzalez
2008	C	`conf`	Inter-species normalization of gene mentions with GNAT. ECCB Jörg Hakenberg, Conrad Plake, Robert Leaman, Michael Schroeder, Graciela Gonzalez
2007	Misc	`conf`	Mining Gene-Disease Relationships from Biomedical Literature: Weighting Proteinprotein Interactions and Connectivity. Pacific Symposium on Biocomputing Graciela Gonzalez, Juan C. Uribe, Luis Tari, Colleen Brophy, Chitta Baral
2007	—	`conf`	Passage Relevancy Through Semantic Relatedness. TREC Luis Tari, Phan Huy Tu, Barry Lumpkin, Robert Leaman, Graciela Gonzalez, Chitta Baral
2007	A	`conf`	Web Service Orchestration for Bioinformatics Systems: Challenges and Current Workflow Definition Approaches. ICWS Graciela Gonzalez, Janaka Balasooriya
2006	A	`conf`	A systematic approach to active and cooperative learning in CS1 and its effects on CS2. SIGCSE Graciela Gonzalez
2006	—	`conf`	ASU at TREC 2006 Genomics Track. TREC Luis Tari, Graciela Gonzalez, Robert Leaman, Shawn Nikkila, Ryan Wendt, Chitta Baral
2005	J	`jnl`	Alan: An Action Language For Modelling Non-Markovian Domains. Stud Logica Graciela Gonzalez, Chitta Baral, Michael Gelfond
2005	—	`conf`	Genomic Information Retrieval Through Selective Extraction and Tagging by the ASU-BioAL Group. TREC Lian Yu, Syed Toufeeq Ahmed, Graciela Gonzalez, Brendan Logsdon, Mutsumi Nakamura, Shawn Nikkila, Kalpesh Shah, Luis Tari, Ryan Wendt, Amanda Zeigler, Chitta Baral
2002	—	`conf`	Modeling Multimedia Displays Using Action Based Temporal Logic. VDB Graciela Gonzalez, Chitta Baral, Peter A. Cooper
1999	—	`conf`	Specifying Generic Multimedia 3D Visualizations and Temporal Presentations from Database Queries. ICMCS, Vol. 1 Chitta Baral, Graciela Gonzalez
1998	J	`jnl`	Conceptual Modeling and Querying in Multimedia Databases. Multim. Tools Appl. Chitta Baral, Graciela Gonzalez, Tran Cao Son
1998	A*	`conf`	Design and Implementation of Display Specification for Multimedia Answers. ICDE Chitta Baral, Graciela Gonzalez, Tran Cao Son
1998	J	`jnl`	Intervals Help to Design an Imaging System. Reliab. Comput. Graciela Gonzalez
1998	A*	`conf`	SQL+D: Extended Display Capabilities for Multimedia Database Queries. ACM Multimedia Chitta Baral, Graciela Gonzalez, Amarendra Nandigam