Graciela Gonzalez-Hernandez

61 papers A* 1B 1Misc 7Journal 34Unranked 13

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	A crisis of overconfidence: Why confidence, not accuracy, is the real risk in clinical AI. BioData Min. Jacob S. Berkowitz, Jake R. Patock, Asma Nawaz, Graciela Gonzalez-Hernandez, Nicholas P. Tatonetti
2025	J	`jnl`	Automatic genetic phenotype normalization from dysmorphology physical examinations: an overview of the BioCreative VIII - Task 3 competition. Database J. Biol. Databases Curation Davy Weissenbacher, Xinwei Zhao, Jessica R. C. Priestley, Katherine M. Szigety, Sarah F. Schmidt, Karen O'Connor, Ekin Soysal, Kirk Roberts, Jiewei Qi, Ling Luo, Zhihao Yang, Hongfei Lin, Hajung Kim, Chanhwi Kim, Jiwoong Sohn, Tim Beck, Marek Rei, Sunkyu Kim, T. Ian Simpson, Joram M. Posma, Antoine Lain, Mujeen Sung, Jaewoo Kang, Areej Alhassan, Viktor Schlegel, Monira Aloud, Riza Batista-Navarro, Goran Nenadic, Ying-Jia Lin, Zhi-Quan Feng, Hung-Yu Kao, Ian M. Campbell, Graciela Gonzalez-Hernandez
2025	—	`conf`	Probing Large Language Model Hidden States for Adverse Drug Reaction Knowledge. AIME (1) Jacob S. Berkowitz, Davy Weissenbacher, Apoorva Srinivasan, Nadine A. Friedrich, Jose Miguel Acitores Cortina, Sophia Kivelson, Graciela Gonzalez-Hernandez, Nicholas P. Tatonetti
2024	A*	`conf`	Automatic sentence segmentation of clinical record narratives in real-world data. EMNLP Dongfang Xu, Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Graciela Gonzalez-Hernandez
2024	J	`jnl`	Detecting goals of care conversations in clinical notes with active learning. J. Biomed. Informatics Davy Weissenbacher, Katherine R. Courtright, Siddharth Rawal, Andrew Crane-Droesch, Karen O'Connor, Nicholas Kuhl, Corinne Merlino, Anessa Foxwell, Lindsay Haines, Joseph C. Puhl, Graciela Gonzalez-Hernandez
2024	J	`jnl`	Overview of the 8th Social Media Mining for Health Applications (#SMM4H) shared tasks at the AMIA 2023 Annual Symposium. J. Am. Medical Informatics Assoc. Ari Z. Klein, Juan M. Banda, Yuting Guo, Ana Lucía Schmidt, Dongfang Xu, Ivan Flores Amaro, Raul Rodriguez-Esteban, Abeed Sarker, Graciela Gonzalez-Hernandez
2024	J	`jnl`	Reddit-Impacts: A Named Entity Recognition Dataset for Analyzing Clinical and Social Effects of Substance Use Derived from Social Media. CoRR Yao Ge, Sudeshna Das, Karen O'Connor, Mohammed Ali Al-Garadi, Graciela Gonzalez-Hernandez, Abeed Sarker
2023	J	`jnl`	Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition. Database J. Biol. Databases Curation Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R. Piccolo, Peijin Han, V. G. Vinod Vydiswaran, Ramya Tekumalla, Juan M. Banda, Parsa Bagherzadeh, Sabine Bergler, João Figueira Silva, Tiago Melo Almeida, Paloma Martínez, Renzo M. Rivera Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez
2023	J	`jnl`	ChatGPT and large language models in academia: opportunities and challenges. BioData Min. Jesse G. Meyer, Ryan J. Urbanowicz, Patrick C. N. Martin, Karen O'Connor, Ruowang Li, Pei-Chen Peng, Tiffani J. Bright, Nicholas P. Tatonetti, Kyoung-Jae Won, Graciela Gonzalez-Hernandez, Jason H. Moore
2022	J	`jnl`	Challenges and opportunities for mining adverse drug reactions: perspectives from pharma, regulatory agencies, healthcare providers and consumers. Database J. Biol. Databases Curation Graciela Gonzalez-Hernandez, Martin Krallinger, Monica A. Muñoz, Raul Rodriguez-Esteban, Özlem Uzuner, Lynette Hirschman
2022	—	`conf`	Overview of the Seventh Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2022. SMM4H@COLING Davy Weissenbacher, Juan M. Banda, Vera Davydova, Darryl Estrada-Zavala, Luis Gascó Sánchez, Yao Ge, Yuting Guo, Ari Z. Klein, Martin Krallinger, Mathias Leddin, Arjun Magge, Raul Rodriguez-Esteban, Abeed Sarker, Ana Lucía Schmidt, Elena Tutubalina, Graciela Gonzalez-Hernandez
2022	—	`ed.`	Proceedings of The Seventh Workshop on Social Media Mining for Health Applications, Workshop & Shared Task, SMM4H@COLING 2022, Gyeongju, Republic of Korea, October 12 - 17, 2022. SMM4H@COLING Graciela Gonzalez-Hernandez, Davy Weissenbacher
2021	J	`jnl`	Active neural networks to detect mentions of changes to medication treatment in social media. J. Am. Medical Informatics Assoc. Davy Weissenbacher, Suyu Ge, Ari Z. Klein, Karen O'Connor, Robert Gross, Sean Hennessy, Graciela Gonzalez-Hernandez
2021	B	`conf`	Addressing Extreme Imbalance for Detecting Medications Mentioned in Twitter User Timelines. AIME Davy Weissenbacher, Siddharth Rawal, Arjun Magge, Graciela Gonzalez-Hernandez
2021	Misc	`conf`	Advanced Methods for Big Data Analytics in Women's Health. PSB Mary Regina Boland, Karin Verspoor, Maricel G. Kann, Su Golder, Lisa Levine, Karen O'Conner, Natalia Villanueva-Rosales, Graciela Gonzalez-Hernandez
2021	J	`jnl`	DeepADEMiner: a deep learning pharmacovigilance pipeline for extraction and normalization of adverse drug event mentions on Twitter. J. Am. Medical Informatics Assoc. Arjun Magge, Elena Tutubalina, Zulfat Miftahutdinov, Ilseyar Alimova, Anne Dirkson, Suzan Verberne, Davy Weissenbacher, Graciela Gonzalez-Hernandez
2021	—	`conf`	Overview of the Sixth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at NAACL 2021. SMM4H@NAACL-HLT Arjun Magge, Ari Z. Klein, Antonio Miranda-Escalada, Mohammed Ali Al-Garadi, Ilseyar Alimova, Zulfat Miftahutdinov, Eulàlia Farré, Salvador Lima-López, Ivan Flores, Karen O'Connor, Davy Weissenbacher, Elena Tutubalina, Abeed Sarker, Juan M. Banda, Martin Krallinger, Graciela Gonzalez-Hernandez
2021	—	`ed.`	Proceedings of the Sixth Social Media Mining for Health Workshop and Shared Task, SMM4H@NAACL-HLT 2021, Mexico City, Mexico, June 10, 2021 SMM4H@NAACL-HLT Arjun Magge, Ari Z. Klein, Antonio Miranda-Escalada, Mohammed Ali Al-Garadi, Ilseyar Alimova, Zulfat Miftahutdinov, Eulàlia Farré-Maduell, Salvador Lima-López, Ivan Flores, Karen O'Connor, Davy Weissenbacher, Elena Tutubalina, Abeed Sarker, Juan M. Banda, Martin Krallinger, Graciela Gonzalez-Hernandez
2021	J	`jnl`	ReportAGE: Automatically extracting the exact age of Twitter users based on self-reports in tweets. CoRR Ari Z. Klein, Arjun Magge, Graciela Gonzalez-Hernandez
2021	J	`jnl`	Text classification models for the automatic detection of nonmedical prescription medication use from social media. BMC Medical Informatics Decis. Mak. Mohammed Ali Al-Garadi, Yuan-Chi Yang, Haitao Cai, Yucheng Ruan, Karen O'Connor, Graciela Gonzalez-Hernandez, Jeanmarie Perrone, Abeed Sarker
2020	J	`jnl`	GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography. Bioinform. Arjun Magge, Davy Weissenbacher, Karen O'Connor, Tasnia Tahsin, Graciela Gonzalez-Hernandez, Matthew Scotch
2020	J	`jnl`	Ideas for how informaticians can get involved with COVID-19 research. BioData Min. Jason H. Moore, Ian Barnett, Mary Regina Boland, Yong Chen, George Demiris, Graciela Gonzalez-Hernandez, Daniel S. Herman, Blanca E. Himes, Rebecca A. Hubbard, Dokyoon Kim, Jeffrey S. Morris, Danielle L. Mowery, Marylyn D. Ritchie, Li Shen, Ryan J. Urbanowicz, John H. Holmes
2020	—	`conf`	Overview of the Fifth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2020. SMM4H@COLING Ari Z. Klein, Ilseyar Alimova, Ivan Flores, Arjun Magge, Zulfat Miftahutdinov, Anne-Lyse Minard, Karen O'Connor, Abeed Sarker, Elena Tutubalina, Davy Weissenbacher, Graciela Gonzalez-Hernandez
2020	—	`ed.`	Proceedings of the Fifth Social Media Mining for Health Applications Workshop & Shared Task, SMM4H@COLING 2020, Barcelona, Spain (Online), December 12, 2020 SMM4H@COLING Graciela Gonzalez-Hernandez, Ari Z. Klein, Ivan Flores, Davy Weissenbacher, Arjun Magge, Karen O'Connor, Abeed Sarker, Anne-Lyse Minard, Elena Tutubalina, Zulfat Miftahutdinov, Ilseyar Alimova
2020	—	`conf`	UPennHLP at WNUT-2020 Task 2 : Transformer models for classification of COVID19 posts on Twitter. W-NUT@EMNLP Arjun Magge, Varad Pimpalkhute, Divya Rallapalli, David Siguenza, Graciela Gonzalez-Hernandez
2019	J	`jnl`	An interpretable natural language processing system for written medical examination assessment. J. Biomed. Informatics Abeed Sarker, Ari Z. Klein, Janet Mee, Polina Harik, Graciela Gonzalez-Hernandez
2019	J	`jnl`	Automatically Identifying Comparator Groups on Twitter for Digital Epidemiology of Pregnancy Outcomes. CoRR Ari Z. Klein, Abeselom Gebreyesus, Graciela Gonzalez-Hernandez
2019	Misc	`conf`	Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature. PSB Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez
2019	J	`jnl`	Comment on: "Deep learning for pharmacovigilance: recurrent neural network architectures for labeling adverse drug reactions in Twitter posts". J. Am. Medical Informatics Assoc. Arjun Magge, Abeed Sarker, Azadeh Nikfarjam, Graciela Gonzalez-Hernandez
2019	J	`jnl`	Deep Neural Networks Ensemble for Detecting Medication Mentions in Tweets. CoRR Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge Ranganatha, Graciela Gonzalez-Hernandez
2019	J	`jnl`	Deep neural networks ensemble for detecting medication mentions in tweets. J. Am. Medical Informatics Assoc. Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge, Graciela Gonzalez-Hernandez
2019	J	`jnl`	Disease associations depend on visit type: results from a visit-wide association study. BioData Min. Mary Regina Boland, Snigdha Alur-Gupta, Lisa Levine, Peter Gabriel, Graciela Gonzalez-Hernandez
2019	—	`conf`	Overview of the Fourth Social Media Mining for Health (SMM4H) Shared Tasks at ACL 2019. SMM4H@ACL Davy Weissenbacher, Abeed Sarker, Arjun Magge, Ashlynn R. Daughton, Karen O'Connor, Michael J. Paul, Graciela Gonzalez-Hernandez
2019	—	`ed.`	Proceedings of the Fourth Social Media Mining for Health Application Workshop & Shared Task, SMM4H@ACL 2019, Florence, Italy, August 2, 2019 SMM4H@ACL Davy Weissenbacher, Graciela Gonzalez-Hernandez
2019	—	`conf`	SemEval-2019 Task 12: Toponym Resolution in Scientific Papers. SemEval@NAACL-HLT Davy Weissenbacher, Arjun Magge, Karen O'Connor, Matthew Scotch, Graciela Gonzalez-Hernandez
2019	J	`jnl`	Towards Automatic Bot Detection in Twitter for Health-related Tasks. CoRR Anahita Davoudi, Ari Z. Klein, Abeed Sarker, Graciela Gonzalez-Hernandez
2019	—	`conf`	Towards Automating Location-Specific Opioid Toxicosurveillance from Twitter via Data Science Methods. MedInfo Abeed Sarker, Graciela Gonzalez-Hernandez, Jeanmarie Perrone
2019	J	`jnl`	Towards scaling Twitter for digital epidemiology of birth defects. npj Digit. Medicine Ari Z. Klein, Abeed Sarker, Davy Weissenbacher, Graciela Gonzalez-Hernandez
2018	J	`jnl`	An unsupervised and customizable misspelling generator for mining noisy health-related text sources. CoRR Abeed Sarker, Graciela Gonzalez-Hernandez
2018	J	`jnl`	An unsupervised and customizable misspelling generator for mining noisy health-related text sources. J. Biomed. Informatics Abeed Sarker, Graciela Gonzalez-Hernandez
2018	J	`jnl`	Automatically Detecting Self-Reported Birth Defect Outcomes on Twitter for Large-scale Epidemiological Research. CoRR Ari Z. Klein, Abeed Sarker, Davy Weissenbacher, Graciela Gonzalez-Hernandez
2018	—	`conf`	Clinical NER and Relation Extraction using Bi-Char-LSTMs and Random Forest Classifiers. Medication and Adverse Drug Event Detection Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez
2018	J	`jnl`	Data and systems for medication-related text classification and concept normalization from Twitter: insights from the Social Media Mining for Health (SMM4H)-2017 shared task. J. Am. Medical Informatics Assoc. Abeed Sarker, Maksim Belousov, Jasper Friedrichs, Kai Hakala, Svetlana Kiritchenko, Farrokh Mehryary, Sifei Han, Tung Tran, Anthony Rios, Ramakanth Kavuluru, Berry de Bruijn, Filip Ginter, Debanjan Mahata, Saif M. Mohammad, Goran Nenadic, Graciela Gonzalez-Hernandez
2018	—	`conf`	Dealing with Medication Non-Adherence Expressions in Twitter. SMM4H@EMNLP Takeshi Onishi, Davy Weissenbacher, Ari Z. Klein, Karen O'Connor, Graciela Gonzalez-Hernandez
2018	J	`jnl`	Deep neural networks and distant supervision for geographic location mention extraction. Bioinform. Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez
2018	J	`jnl`	GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records. Bioinform. Tasnia Tahsin, Davy Weissenbacher, Karen O'Connor, Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez
2018	—	`conf`	Overview of the Third Social Media Mining for Health (SMM4H) Shared Tasks at EMNLP 2018. SMM4H@EMNLP Davy Weissenbacher, Abeed Sarker, Michael J. Paul, Graciela Gonzalez-Hernandez
2018	—	`ed.`	Proceedings of the 2018 EMNLP Workshop SMM4H: The 3rd Social Media Mining for Health Applications Workshop & Shared Task, SMM4H@EMNLP 2018, Brussels, Belgium, October 31, 2018 SMM4H@EMNLP Graciela Gonzalez-Hernandez, Davy Weissenbacher, Abeed Sarker, Michael J. Paul
2018	Misc	`conf`	Session Introduction. PSB Graciela Gonzalez-Hernandez, Abeed Sarker, Karen O'Connor, Casey S. Greene, Hongfang Liu
2018	J	`jnl`	Social media mining for birth defects research: A rule-based, bootstrapping approach to collecting data for rare health-related events on Twitter. J. Biomed. Informatics Ari Z. Klein, Abeed Sarker, Haitao Cai, Davy Weissenbacher, Graciela Gonzalez-Hernandez
2017	Misc	`conf`	Hybrid Semantic Analysis for Mapping Adverse Drug Reaction Mentions in Tweets to Medical Terminology. AMIA Ehsan Emadzadeh, Abeed Sarker, Azadeh Nikfarjam, Graciela Gonzalez-Hernandez
2016	J	`jnl`	Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts. J. Biomed. Informatics Ioannis Korkontzelos, Azadeh Nikfarjam, Matthew Shardlow, Abeed Sarker, Sophia Ananiadou, Graciela Gonzalez-Hernandez
2016	Misc	`conf`	Session Introduction. PSB Michael J. Paul, Abeed Sarker, John S. Brownstein, Azadeh Nikfarjam, Matthew Scotch, Karen L. Smith, Graciela Gonzalez-Hernandez
2016	Misc	`conf`	Social Media Mining Shared Task Workshop. PSB Abeed Sarker, Azadeh Nikfarjam, Graciela Gonzalez-Hernandez
2015	—	`conf`	DIEGOLab: An Approach for Message-level Sentiment Classification in Twitter. SemEval@NAACL-HLT Abeed Sarker, Azadeh Nikfarjam, Davy Weissenbacher, Graciela Gonzalez-Hernandez
2015	J	`jnl`	Pharmacovigilance from social media: mining adverse drug reaction mentions using sequence labeling with word embedding cluster features. J. Am. Medical Informatics Assoc. Azadeh Nikfarjam, Abeed Sarker, Karen O'Connor, Rachel E. Ginn, Graciela Gonzalez-Hernandez
2015	J	`jnl`	Utilizing social media data for pharmacovigilance: A review. J. Biomed. Informatics Abeed Sarker, Rachel E. Ginn, Azadeh Nikfarjam, Karen O'Connor, Karen L. Smith, Swetha Jayaraman, Tejaswi Upadhaya, Graciela Gonzalez-Hernandez
2014	Misc	`conf`	Pharmacovigilance on Twitter? Mining Tweets for Adverse Drug Reactions. AMIA Karen O'Connor, Azadeh Nikfarjam, Rachel E. Ginn, Pranoti Pimpalkhute, Abeed Sarker, Karen L. Smith, Graciela Gonzalez-Hernandez
2014	J	`jnl`	Unsupervised gene function extraction using semantic vectors. Database J. Biol. Databases Curation Ehsan Emadzadeh, Azadeh Nikfarjam, Rachel E. Ginn, Graciela Gonzalez-Hernandez
2013	J	`jnl`	Towards generating a patient's timeline: Extracting temporal relationships from clinical notes. J. Biomed. Informatics Azadeh Nikfarjam, Ehsan Emadzadeh, Graciela Gonzalez-Hernandez
2011	—	`conf`	Double Layered Learning for Biological Event Extraction from Text. BioNLP@ACL (Shared Task) Ehsan Emadzadeh, Azadeh Nikfarjam, Graciela Gonzalez-Hernandez