Gordon M. Shepherd

54 papers Misc 6Journal 45Unranked 1

Year	Rank	Type	Title / Venue / Authors
2020	J	`jnl`	Orthonasal versus retronasal glomerular activity in rat olfactory bulb by fMRI. NeuroImage Basavaraju G. Sanganahalli, Keeley L. Baker, Garth J. Thompson, Peter Herman, Gordon M. Shepherd, Justus Valentijn Verhagen, Fahmeed Hyder
2019	J	`jnl`	Automated Metadata Suggestion During Repository Submission. Neuroinformatics Robert A. McDougal, Isha Dalal, Thomas M. Morse, Gordon M. Shepherd
2018	J	`jnl`	Spontaneous activity forms a foundation for odor-evoked activation maps in the rat olfactory bulb. NeuroImage Garth John Thompson, Basavaraju G. Sanganahalli, Keeley L. Baker, Peter Herman, Gordon M. Shepherd, Justus Valentijn Verhagen, Fahmeed Hyder
2018	J	`jnl`	Wilfrid Rall. Neuroinformatics Gordon M. Shepherd
2017	J	`jnl`	Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience. J. Comput. Neurosci. Robert A. McDougal, Thomas M. Morse, Ted Carnevale, Luis N. Marenco, Rixin Wang, Michele Migliore, Perry L. Miller, Gordon M. Shepherd, Michael L. Hines
2016	J	`jnl`	Comparison of glomerular activity patterns by fMRI and wide-field calcium imaging: Implications for principles underlying odor mapping. NeuroImage Basavaraju G. Sanganahalli, Michelle R. Rebello, Peter Herman, Xenophon Papademetris, Gordon M. Shepherd, Justus Valentijn Verhagen, Fahmeed Hyder
2016	J	`jnl`	Glomerular and Mitral-Granule Cell Microcircuits Coordinate Temporal and Spatial Information Processing in the Olfactory Bulb. Frontiers Comput. Neurosci. Francesco Cavarretta, Addolorata Marasco, Michael L. Hines, Gordon M. Shepherd, Michele Migliore
2016	J	`jnl`	ORDB, HORDE, ODORactor and other on-line knowledge resources of olfactory receptor-odorant interactions. Database J. Biol. Databases Curation Luis N. Marenco, Rixin Wang, Robert A. McDougal, Tsviya Olender, Michal Twik, Elspeth A. Bruford, Xinyi Liu, Jian Zhang, Doron Lancet, Gordon M. Shepherd, Chiquito J. Crasto
2015	J	`jnl`	3D-printer visualization of neuron models. Frontiers Neuroinformatics Robert A. McDougal, Gordon M. Shepherd
2015	J	`jnl`	ModelView for ModelDB: Online Presentation of Model Structure. Neuroinformatics Robert A. McDougal, Thomas M. Morse, Michael L. Hines, Gordon M. Shepherd
2014	J	`jnl`	Distributed organization of a brain microcircuit analyzed by three-dimensional modeling: the olfactory bulb. Frontiers Comput. Neurosci. Michele Migliore, Francesco Cavarretta, Michael L. Hines, Gordon M. Shepherd
2014	J	`jnl`	Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources. Frontiers Neuroinformatics Luis N. Marenco, Rixin Wang, Anita E. Bandrowski, Jeffrey S. Grethe, Gordon M. Shepherd, Perry L. Miller
2014	—	`ch.`	ModelDB. Encyclopedia of Computational Neuroscience Robert A. McDougal, Rixin Wang, Thomas M. Morse, Michele Migliore, Luis N. Marenco, Ted Carnevale, Michael L. Hines, Gordon M. Shepherd
2014	—	`ch.`	SenseLab: Integration of Multidisciplinary Neuroscience Data. Encyclopedia of Computational Neuroscience Gordon M. Shepherd, Thomas M. Morse, Luis N. Marenco, Kei-Hoi Cheung, Ted Carnevale, Michele Migliore, Robert A. McDougal, Michael L. Hines, Perry L. Miller
2013	J	`jnl`	Sparse Distributed Representation of Odors in a Large-scale Olfactory Bulb Circuit. PLoS Comput. Biol. Yuguo Yu, Thomas S. McTavish, Michael L. Hines, Gordon M. Shepherd, Cesare Valenti, Michele Migliore
2012	J	`jnl`	An ontological approach to describing neurons and their relationships. Frontiers Neuroinformatics David J. Hamilton, Gordon M. Shepherd, Maryann E. Martone, Giorgio A. Ascoli
2012	J	`jnl`	Mitral cell spike synchrony modulated by dendrodendritic synapse location. Frontiers Comput. Neurosci. Thomas S. McTavish, Michele Migliore, Gordon M. Shepherd, Michael L. Hines
2010	J	`jnl`	Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience. Artif. Intell. Medicine Matthias Samwald, Huajun Chen, Alan Ruttenberg, Ernest Lim, Luis N. Marenco, Perry L. Miller, Gordon M. Shepherd, Kei-Hoi Cheung
2010	J	`jnl`	The NIF DISCO Framework: Facilitating Automated Integration of Neuroscience Content on the Web. Neuroinformatics Luis N. Marenco, Rixin Wang, Gordon M. Shepherd, Perry L. Miller
2009	J	`jnl`	Approaches to neuroscience data integration. Briefings Bioinform. Kei-Hoi Cheung, Ernest Lim, Matthias Samwald, Huajun Chen, Luis N. Marenco, Matthew Holford, Thomas M. Morse, Pradeep Mutalik, Gordon M. Shepherd, Perry L. Miller
2009	—	`conf`	Entrez Neuron RDFa: A Pragmatic Semantic Web Application for Data Integration in Neuroscience Research. MIE Matthias Samwald, Ernest Lim, Peter Masiar, Luis N. Marenco, Huajun Chen, Thomas M. Morse, Pradeep Mutalik, Gordon M. Shepherd, Perry L. Miller, Kei-Hoi Cheung
2008	J	`jnl`	Dendritic action potentials connect distributed dendrodendritic microcircuits. J. Comput. Neurosci. Michele Migliore, Gordon M. Shepherd
2008	J	`jnl`	Federated Access to Heterogeneous Information Resources in the Neuroscience Information Framework (NIF). Neuroinformatics Amarnath Gupta, William J. Bug, Luis N. Marenco, Xufei Qian, Christopher Condit, Arun Rangarajan, Hans-Michael Müller, Perry L. Miller, Brian Sanders, Jeffrey S. Grethe, Vadim Astakhov, Gordon M. Shepherd, Paul W. Sternberg, Maryann E. Martone
2008	J	`jnl`	Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework. Neuroinformatics Luis N. Marenco, Yuli Li, Maryann E. Martone, Paul W. Sternberg, Gordon M. Shepherd, Perry L. Miller
2008	J	`jnl`	The NIF LinkOut Broker: A Web Resource to Facilitate Federated Data Integration using NCBI Identifiers. Neuroinformatics Luis N. Marenco, Giorgio A. Ascoli, Maryann E. Martone, Gordon M. Shepherd, Perry L. Miller
2008	J	`jnl`	The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience. Neuroinformatics William J. Bug, Giorgio A. Ascoli, Jeffrey S. Grethe, Amarnath Gupta, Christine Fennema-Notestine, Angela R. Laird, Stephen D. Larson, Daniel L. Rubin, Gordon M. Shepherd, Jessica A. Turner, Maryann E. Martone
2008	J	`jnl`	The Neuroscience Information Framework: A Data and Knowledge Environment for Neuroscience. Neuroinformatics Daniel Gardner, Huda Akil, Giorgio A. Ascoli, Douglas M. Bowden, William J. Bug, Duncan E. Donohue, David H. Goldberg, Bernice Grafstein, Jeffrey S. Grethe, Amarnath Gupta, Maryam Halavi, David N. Kennedy, Luis N. Marenco, Maryann E. Martone, Perry L. Miller, Hans-Michael Müller, Adrian Robert, Gordon M. Shepherd, Paul W. Sternberg, David C. Van Essen, Robert W. Williams
2007	J	`jnl`	AlzPharm: integration of neurodegeneration data using RDF. BMC Bioinform. Hugo Y. K. Lam, Luis N. Marenco, Tim Clark, Yong Gao, June Kinoshita, Gordon M. Shepherd, Perry L. Miller, Elizabeth Wu, Gwendolyn T. Wong, Nian Liu, Chiquito J. Crasto, Thomas M. Morse, Susie Stephens, Kei-Hoi Cheung
2007	J	`jnl`	OdorMapComparer: An Application for Quantitative Analyses and Comparisons of fMRI Brain Odor Maps. Neuroinformatics Nian Liu, Fuqiang Xu, Perry L. Miller, Gordon M. Shepherd
2007	J	`jnl`	SenseLab: new developments in disseminating neuroscience information. Briefings Bioinform. Chiquito J. Crasto, Luis N. Marenco, Nian Liu, Thomas M. Morse, Kei-Hoi Cheung, Peter C. Lai, Gautam Bahl, Peter Masiar, Hugo Y. K. Lam, Ernest Lim, Huajun Chen, Prakash M. Nadkarni, Michele Migliore, Perry L. Miller, Gordon M. Shepherd
2006	Misc	`conf`	Using Web Ontology Language to Integrate Heterogeneous Databases in the Neurosciences. AMIA Hugo Y. K. Lam, Luis N. Marenco, Gordon M. Shepherd, Perry L. Miller, Kei-Hoi Cheung
2005	J	`jnl`	The Role of Distal Dendritic Gap Junctions in Synchronization of Mitral Cell Axonal Output. J. Comput. Neurosci. Michele Migliore, Michael L. Hines, Gordon M. Shepherd
2004	J	`jnl`	A gateway to the future of neuroinformatics. Neuroinformatics Daniel Gardner, Gordon M. Shepherd
2004	J	`jnl`	Informatics approaches to functional MRI odor mapping of the rodent olfactory bulb - OdorMapBuilder and OdorMapDB. Neuroinformatics Nian Liu, Fuqiang Xu, Luis N. Marenco, Fahmeed Hyder, Perry L. Miller, Gordon M. Shepherd
2004	J	`jnl`	Model Formulation: QIS: A Framework for Biomedical Database Federation. J. Am. Medical Informatics Assoc. Luis N. Marenco, Tzuu-Yi Wang, Gordon M. Shepherd, Perry L. Miller, Prakash M. Nadkarni
2004	J	`jnl`	ModelDB: A Database to Support Computational Neuroscience. J. Comput. Neurosci. Michael L. Hines, Thomas M. Morse, Michele Migliore, Nicholas T. Carnevale, Gordon M. Shepherd
2004	J	`jnl`	Semi-automated population of an online database of neuronal models (ModelDB) with citation information, using PubMed for validation. Neuroinformatics Andrew P. Davison, Thomas M. Morse, Michele Migliore, Gordon M. Shepherd, Michael L. Hines
2003	J	`jnl`	Application of Information Technology: Achieving Evolvable Web-Database Bioscience Applications Using the EAV/CR Framework: Recent Advances. J. Am. Medical Informatics Assoc. Luis N. Marenco, Nicholas P. Tosches, Chiquito J. Crasto, Gordon M. Shepherd, Perry L. Miller, Prakash M. Nadkarni
2003	Misc	`conf`	Creating Knowledgebases to Text-Mine PUBMED Articles Using Clustering Techniques. AMIA Chiquito J. Crasto, Thomas M. Morse, Michele Migliore, Prakash M. Nadkarni, Michael L. Hines, Douglas E. Brash, Perry L. Miller, Gordon M. Shepherd
2003	J	`jnl`	ModelDB - Making models publicly accessible to support computational neuroscience. Neuroinformatics Michele Migliore, Thomas M. Morse, Andrew P. Davison, Luis N. Marenco, Gordon M. Shepherd, Michael L. Hines
2003	J	`jnl`	Sharing the mighty mouse. Neuroinformatics Gordon M. Shepherd
2003	J	`jnl`	Text mining neuroscience journal articles to populate neuroscience databases. Neuroinformatics Chiquito J. Crasto, Luis N. Marenco, Michele Migliore, Buqing Mao, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
2003	J	`jnl`	Towards effective and rewarding data sharing. Neuroinformatics Daniel Gardner, Arthur W. Toga, Giorgio A. Ascoli, Jackson T. Beatty, James F. Brinkley, Anders M. Dale, Peter T. Fox, Esther P. Gardner, John S. George, Nigel H. Goddard, Kristen M. Harris, Edward Herskovits, Michael L. Hines, Gwen A. Jacobs, Russell E. Jacobs, Edward G. Jones, David N. Kennedy, Daniel Y. Kimberg, John C. Mazziotta, Perry L. Miller, Susumu Mori, David C. Mountain, Allan L. Reiss, Glenn D. Rosen, David A. Rottenberg, Gordon M. Shepherd, Neil R. Smalheiser, Kenneth P. Smith, Tom Strachan, David C. Van Essen, Robert W. Williams, Stephen T. C. Wong
2002	J	`jnl`	Olfactory Receptor Database: a metadata-driven automated population from sources of gene and protein sequences. Nucleic Acids Res. Chiquito J. Crasto, Luis N. Marenco, Perry L. Miller, Gordon M. Shepherd
2001	Misc	`conf`	A Pilot Approach to Automated and Efficient Transfer of Neuroscience Data from Journal Articles to Searchable Databases. AMIA Chiquito J. Crasto, Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
2001	J	`jnl`	Synthesis of Research: Integration of Multidisciplinary Sensory Data: A Pilot Model of the Human Brain Project Approach. J. Am. Medical Informatics Assoc. Perry L. Miller, Prakash M. Nadkarni, Michael S. Singer, Luis N. Marenco, Michael L. Hines, Gordon M. Shepherd
2000	J	`jnl`	Olfactory Receptor Database: a sensory chemoreceptor resource. Nucleic Acids Res. Emmanouil Skoufos, Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
2000	Misc	`conf`	The SenseLab Database: System Design Towards Interoperability. AMIA Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
1999	J	`jnl`	Application of Information Technology: Organization of Heterogeneous Scientific Data Using the EAV/CR Representation. J. Am. Medical Informatics Assoc. Prakash M. Nadkarni, Luis N. Marenco, Roland Chen, Emmanouil Skoufos, Gordon M. Shepherd, Perry L. Miller
1999	Misc	`conf`	Neuronal database integration: the Senselab EAV data model. AMIA Luis N. Marenco, Prakash M. Nadkarni, Emmanouil Skoufos, Gordon M. Shepherd, Perry L. Miller
1999	J	`jnl`	Olfactory Receptor Database: a database of the largest eukaryotic gene family. Nucleic Acids Res. Emmanouil Skoufos, Matthew D. Healy, Michael S. Singer, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
1998	Misc	`conf`	Acquiring, Storing and Retrieving Diverse Biomedical Data Using the World-Wide-Web: The SenseLab Paradigm. AMIA Emmanouil Skoufos, Jason S. Mirsky, Matthew D. Healy, Michael S. Singer, Michael L. Hines, Prakash M. Nakardi, Perry L. Miller, Gordon M. Shepherd
1996	J	`jnl`	Application of Technology: ModelDB: An Environment for Running and Storing Computational Models and Their Results Applied to Neuroscience. J. Am. Medical Informatics Assoc. Bret E. Peterson, Matthew D. Healy, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
1994	J	`jnl`	Dedication of the first issue to Wilfrid Rall. J. Comput. Neurosci. Gordon M. Shepherd