Gordon K. Smyth

29 papers Journal 27Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Benchmarking cell type annotation methods for 10x Xenium spatial transcriptomics data.
BMC Bioinform.
Jinming Cheng, Xinyi Jin, Gordon K. Smyth, Yunshun Chen
2023 J jnl
Neither random nor censored: estimating intensity-dependent probabilities for missing values in label-free proteomics.
Bioinform.
Mengbo Li, Gordon K. Smyth
2017 J jnl
Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR.
F1000Research
Yunshun Chen, Bhupinder Pal, Jane E. Visvader, Gordon K. Smyth
2016 J jnl
From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline.
F1000Research
Yunshun Chen, Aaron T. L. Lun, Gordon K. Smyth
2016 — ch.
It's DE-licious: A Recipe for Differential Expression Analyses of RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR.
Statistical Genomics
Aaron T. L. Lun, Yunshun Chen, Gordon K. Smyth
2016 J jnl
statmod: Probability Calculations for the Inverse Gaussian Distribution.
R J.
Göknur Giner, Gordon K. Smyth
2015 J jnl
diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data.
BMC Bioinform.
Aaron T. L. Lun, Gordon K. Smyth
2014 J jnl
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.
Bioinform.
Yang Liao, Gordon K. Smyth, Wei Shi
2013 J jnl
Separate-channel analysis of two-channel microarrays: recovering inter-spot information.
BMC Bioinform.
Gordon K. Smyth, Naomi S. Altman
2010 J jnl
ROAST: rotation gene set tests for complex microarray experiments.
Bioinform.
Di Wu, Elgene Lim, François Vaillant, Marie-Liesse Asselin-Labat, Jane E. Visvader, Gordon K. Smyth
2009 J jnl
Illumina WG-6 BeadChip strips should be normalized separately.
BMC Bioinform.
Wei Shi, Ashish Banerjee, Matthew E. Ritchie, Steve Gerondakis, Gordon K. Smyth
2009 J jnl
Testing significance relative to a fold-change threshold is a TREAT.
Bioinform.
Davis J. McCarthy, Gordon K. Smyth
2008 J jnl
Evaluation of Tweedie exponential dispersion model densities by Fourier inversion.
Stat. Comput.
Peter K. Dunn, Gordon K. Smyth
2007 J jnl
A comparison of background correction methods for two-colour microarrays.
Bioinform.
Matthew E. Ritchie, Jeremy David Silver, Alicia Oshlack, Melissa Holmes, Dileepa S. Diyagama, Andrew J. Holloway, Gordon K. Smyth
2007 J jnl
Moderated statistical tests for assessing differences in tag abundance.
Bioinform.
Mark D. Robinson, Gordon K. Smyth
2007 J jnl
Using DNA microarrays to study gene expression in closely related species.
Bioinform.
Alicia Oshlack, Adrien E. Chabot, Gordon K. Smyth, Yoav Gilad
2006 J jnl
Empirical array quality weights in the analysis of microarray data.
BMC Bioinform.
Matthew E. Ritchie, Dileepa S. Diyagama, Jody Neilson, Ryan van Laar, Alexander Dobrovic, Andrew J. Holloway, Gordon K. Smyth
2006 J jnl
Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis.
BMC Bioinform.
Andrew J. Holloway, Alicia Oshlack, Dileepa S. Diyagama, David D. L. Bowtell, Gordon K. Smyth
2006 J jnl
affylmGUI: a graphical user interface for linear modeling of single channel microarray data.
Bioinform.
James M. Wettenhall, Ken M. Simpson, Keith Satterley, Gordon K. Smyth
2005 — conf
A systematic approach for comprehensive T-cell epitope discovery using peptide libraries.
ISMB (Supplement of Bioinformatics)
Tim Beißbarth, Jason A. Tye-Din, Gordon K. Smyth, Terence P. Speed, Robert P. Anderson
2005 J jnl
Series evaluation of Tweedie exponential dispersion model densities.
Stat. Comput.
Peter K. Dunn, Gordon K. Smyth
2005 J jnl
Use of within-array replicate spots for assessing differential expression in microarray experiments.
Bioinform.
Gordon K. Smyth, Joëlle Michaud, Hamish S. Scott
2004 J jnl
Semi-parametric extended Poisson process models for count data.
Stat. Comput.
Heather M. Podlich, Malcolm J. Faddy, Gordon K. Smyth
2004 J jnl
limmaGUI: A graphical user interface for linear modeling of microarray data.
Bioinform.
James M. Wettenhall, Gordon K. Smyth
2002 J jnl
An Improved Saddlepoint Approximation Based on the Negative Binomial Distribution for the General Birth Process.
Comput. Stat.
Gordon K. Smyth, Heather M. Podlich
2000 J jnl
Employing Symmetry Constraints for Improved Frequency Estimation by Eigenanalysis Methods.
Technometrics
Gordon K. Smyth
1996 J jnl
Partitioned algorithms for maximum likelihood and other non-linear estimation.
Stat. Comput.
Gordon K. Smyth
1995 J jnl
A Modified Prony Algorithm for Exponential Function Fitting.
SIAM J. Sci. Comput.
Michael R. Osborne, Gordon K. Smyth
1991 J jnl
A Modified Prony Algorithm for Fitting Functions Defined by Difference Equations.
SIAM J. Sci. Comput.
Michael R. Osborne, Gordon K. Smyth