Gongbo Zhang - RankMe

53 papers A* 1Misc 7Journal 38Unranked 7

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A data-driven method for research trend analysis in a scientific discipline: Application to the journal of biomedical informatics. J. Biomed. Informatics Yilu Fang, Gongbo Zhang, Samir Sanchez Tejada, Fangyi Chen, Edward H. Shortliffe, Vimla L. Patel, Mor Peleg, Chunhua Weng
2026	J	`jnl`	Autonomous Agent-Orchestrated Digital Twins (AADT): Leveraging the OpenClaw Framework for State Synchronization in Rare Genetic Disorders. CoRR Hongzhuo Chen, Zhanliang Wang, Quan M. Nguyen, Gongbo Zhang, Chunhua Weng, Kai Wang
2026	J	`jnl`	CPGPrompt: Translating Clinical Guidelines into LLM-Executable Decision Support. CoRR Ruiqi Deng, Geoffrey Martin, Tony Wang, Gongbo Zhang, Yi Liu, Chunhua Weng, Yanshan Wang, Justin F. Rousseau, Yifan Peng
2026	J	`jnl`	LATO: 3D Mesh Flow Matching with Structured TOpology Preserving LAtents. CoRR Tianhao Zhao, Youjia Zhang, Hang Long, Jinshen Zhang, Wenbing Li, Yang Yang, Gongbo Zhang, Jozef Hladký, Matthias Nießner, Wei Yang
2025	J	`jnl`	An Efficient Node Selection Policy for Monte Carlo Tree Search with Neural Networks: INFORMS J. Comput. Xiaotian Liu, Yijie Peng, Gongbo Zhang, Ruihan Zhou
2025	J	`jnl`	CLEAR: A vision to support clinical evidence lifecycle with continuous learning. J. Biomed. Informatics Yilu Fang, Gongbo Zhang, Fangyi Chen, George Hripcsak, Yifan Peng, Patrick B. Ryan, Chunhua Weng
2025	J	`jnl`	Efficient Learning for Selecting Top-m Context-Dependent Designs. IEEE Trans Autom. Sci. Eng. Gongbo Zhang, Sihua Chen, Kuihua Huang, Yijie Peng
2025	—	`conf`	EvidenceOutcomes: A Dataset of Clinical Trial Publications with Clinically Meaningful Outcomes. MedInfo Yiliang Zhou, Abigail M. Newbury, Gongbo Zhang, Betina Ross S. Idnay, Hao Liu, Chunhua Weng, Yifan Peng
2025	J	`jnl`	EvidenceOutcomes: a Dataset of Clinical Trial Publications with Clinically Meaningful Outcomes. CoRR Yiliang Zhou, Abigail M. Newbury, Gongbo Zhang, Betina Ross S. Idnay, Hao Liu, Chunhua Weng, Yifan Peng
2025	—	`conf`	FABind+: Enhancing Molecular Docking through Improved Pocket Prediction and Pose Generation. KDD (1) Kaiyuan Gao, Qizhi Pei, Gongbo Zhang, Jinhua Zhu, Kun He, Lijun Wu
2025	J	`jnl`	Leveraging long context in retrieval augmented language models for medical question answering. npj Digit. Medicine Gongbo Zhang, Zihan Xu, Qiao Jin, Fangyi Chen, Yilu Fang, Yi Liu, Justin F. Rousseau, Ziyang Xu, Zhiyong Lu, Chunhua Weng, Yifan Peng
2025	J	`jnl`	Mini-mental status examination phenotyping for Alzheimer's disease patients using both structured and narrative electronic health record features. J. Am. Medical Informatics Assoc. Betina Idnay, Gongbo Zhang, Fangyi Chen, Casey N. Ta, Matthew W. Schelke, Karen Marder, Chunhua Weng
2025	—	`conf`	Natural Language Processing in Support of Evidence-based Medicine: A Scoping Review. ACL (Findings) Zihan Xu, Haotian Ma, Yihao Ding, Gongbo Zhang, Chunhua Weng, Yifan Peng
2025	J	`jnl`	Natural Language Processing in Support of Evidence-based Medicine: A Scoping Review. CoRR Zihan Xu, Haotian Ma, Gongbo Zhang, Yihao Ding, Chunhua Weng, Yifan Peng
2025	J	`jnl`	Scalable Scientific Interest Profiling Using Large Language Models. CoRR Yilun Liang, Gongbo Zhang, Edward Sun, Betina Idnay, Yilu Fang, Fangyi Chen, Casey N. Ta, Yifan Peng, Chunhua Weng
2025	J	`jnl`	Scalable scientific interest profiling using large language models. J. Biomed. Informatics Yilun Liang, Gongbo Zhang, Edward Sun, Betina Idnay, Yilu Fang, Fangyi Chen, Casey N. Ta, Yifan Peng, Chunhua Weng
2025	J	`jnl`	Semi-supervised learning from small annotated data and large unlabeled data for fine-grained Participants, Intervention, Comparison, and Outcomes entity recognition. J. Am. Medical Informatics Assoc. Fangyi Chen, Gongbo Zhang, Yilu Fang, Yifan Peng, Chunhua Weng
2025	J	`jnl`	UniGenX: Unified Generation of Sequence and Structure with Autoregressive Diffusion. CoRR Gongbo Zhang, Yanting Li, Renqian Luo, Pipi Hu, Zeru Zhao, Lingbo Li, Guoqing Liu, Zun Wang, Ran Bi, Kaiyuan Gao, Liya Guo, Yu Xie, Chang Liu, Jia Zhang, Tian Xie, Robert Pinsler, Claudio Zeni, Ziheng Lu, Yingce Xia, Marwin H. S. Segler, Maik Riechert, Li Yuan, Lei Chen, Haiguang Liu, Tao Qin
2024	J	`jnl`	A MapReduce Approach to Effectively Utilize Long Context Information in Retrieval Augmented Language Models. CoRR Gongbo Zhang, Zihan Xu, Qiao Jin, Fangyi Chen, Yilu Fang, Yi Liu, Justin F. Rousseau, Ziyang Xu, Zhiyong Lu, Chunhua Weng, Yifan Peng
2024	J	`jnl`	A Span-based Model for Extracting Overlapping PICO Entities from RCT Publications. CoRR Gongbo Zhang, Yiliang Zhou, Yan Hu, Hua Xu, Chunhua Weng, Yifan Peng
2024	J	`jnl`	A span-based model for extracting overlapping PICO entities from randomized controlled trial publications. J. Am. Medical Informatics Assoc. Gongbo Zhang, Yiliang Zhou, Yan Hu, Hua Xu, Chunhua Weng, Yifan Peng
2024	J	`jnl`	Closing the gap between open source and commercial large language models for medical evidence summarization. npj Digit. Medicine Gongbo Zhang, Qiao Jin, Yiliang Zhou, Song Wang, Betina Idnay, Yiming Luo, Elizabeth Park, Jordan G. Nestor, Matthew E. Spotnitz, Ali Soroush, Thomas Campion, Zhiyong Lu, Chunhua Weng, Yifan Peng
2024	J	`jnl`	Closing the gap between open-source and commercial large language models for medical evidence summarization. CoRR Gongbo Zhang, Qiao Jin, Yiliang Zhou, Song Wang, Betina Ross S. Idnay, Yiming Luo, Elizabeth Park, Jordan G. Nestor, Matthew E. Spotnitz, Ali Soroush, Thomas Campion, Zhiyong Lu, Chunhua Weng, Yifan Peng
2024	J	`jnl`	Criteria2Query 3.0: Leveraging generative large language models for clinical trial eligibility query generation. J. Biomed. Informatics Jimyung Park, Yilu Fang, Casey N. Ta, Gongbo Zhang, Betina Idnay, Fangyi Chen, David Feng, Rebecca Shyu, Emily R. Gordon, Matthew E. Spotnitz, Chunhua Weng
2024	J	`jnl`	Demystifying Large Language Models for Medicine: A Primer. CoRR Qiao Jin, Nicholas Wan, Robert Leaman, Shubo Tian, Zhizheng Wang, Yifan Yang, Zifeng Wang, Guangzhi Xiong, Po-Ting Lai, Qingqing Zhu, Benjamin Hou, Maame Sarfo-Gyamfi, Gongbo Zhang, Aidan Gilson, Balu Bhasuran, Zhe He, Aidong Zhang, Jimeng Sun, Chunhua Weng, Ronald M. Summers, Qingyu Chen, Yifan Peng, Zhiyong Lu
2024	J	`jnl`	Leveraging generative AI for clinical evidence synthesis needs to ensure trustworthiness. J. Biomed. Informatics Gongbo Zhang, Qiao Jin, Denis Jered McInerney, Yong Chen, Fei Wang, Curtis L. Cole, Qian Yang, Yanshan Wang, Bradley A. Malin, Mor Peleg, Byron C. Wallace, Zhiyong Lu, Chunhua Weng, Yifan Peng
2024	J	`jnl`	Rare disease diagnosis using knowledge guided retrieval augmentation for ChatGPT. J. Biomed. Informatics Charlotte Zelin, Wendy K. Chung, Mederic Jeanne, Gongbo Zhang, Chunhua Weng
2024	J	`jnl`	Semi-Supervised Learning from Small Annotated Data and Large Unlabeled Data for Fine-grained PICO Entity Recognition. CoRR Fangyi Chen, Gongbo Zhang, Yilu Fang, Yifan Peng, Chunhua Weng
2024	Misc	`conf`	Solving Mixed Integer Linear Programs by Monte Carlo Tree Search. WSC Gongbo Zhang, Yijie Peng
2023	Misc	`conf`	A Simulation Optimization Method for Scheduling Automated Guided Vehicles in a Stochastic Warehouse Management System. WSC Gongbo Zhang, Xiaotian Liu, Yijie Peng
2023	J	`jnl`	Asymptotically Optimal Sampling Policy for Selecting Top- INFORMS J. Comput. Gongbo Zhang, Yijie Peng, Jianghua Zhang, Enlu Zhou
2023	J	`jnl`	Efficient Sampling Policy for Selecting a Subset With the Best. IEEE Trans. Autom. Control. Gongbo Zhang, Bin Chen, Qing-Shan Jia, Yijie Peng
2023	J	`jnl`	Leveraging Generative AI for Clinical Evidence Summarization Needs to Achieve Trustworthiness. CoRR Gongbo Zhang, Qiao Jin, Denis Jered McInerney, Yong Chen, Fei Wang, Curtis L. Cole, Qian Yang, Yanshan Wang, Bradley A. Malin, Mor Peleg, Byron C. Wallace, Zhiyong Lu, Chunhua Weng, Yifan Peng
2023	Misc	`conf`	Top-Two Thompson Sampling for Selecting Context-Dependent Best Designs. WSC Xinbo Shi, Yijie Peng, Gongbo Zhang
2022	J	`jnl`	A Stochastic Approximation Method for Simulation-Based Quantile Optimization. INFORMS J. Comput. Jiaqiao Hu, Yijie Peng, Gongbo Zhang, Qi Zhang
2022	J	`jnl`	ADE-Net: A Deep Neural Network for DAS Earthquake Detection Trained With a Limited Number of Positive Samples. IEEE Trans. Geosci. Remote. Sens. Hao Lv, Xiangfang Zeng, Feng Bao, Jun Xie, Rongbing Lin, Zhenghong Song, Gongbo Zhang
2022	J	`jnl`	An Efficient Dynamic Sampling Policy For Monte Carlo Tree Search. CoRR Gongbo Zhang, Yijie Peng, Yilong Xu
2022	Misc	`conf`	An Efficient Dynamic Sampling Policy for Monte Carlo Tree Search. WSC Gongbo Zhang, Yijie Peng, Yilong Xu
2022	Misc	`conf`	Thompson Sampling Meets Ranking and Selection. WSC Yijie Peng, Gongbo Zhang
2022	J	`jnl`	Translational drug-interaction corpus. Database J. Biol. Databases Curation Shijun Zhang, Heng-Yi Wu, Lei Wang, Gongbo Zhang, Luis M. Rocha, Hagit Shatkay, Lang Li
2021	J	`jnl`	Corrigendum to: Utilizing image and caption information for biomedical document classification. Bioinform. Pengyuan Li, Xiangying Jiang, Gongbo Zhang, Juan Trelles Trabucco, Daniela Raciti, Cynthia L. Smith, Martin Ringwald, G. Elisabeta Marai, Cecilia N. Arighi, Hagit Shatkay
2021	Misc	`conf`	Dynamic Sampling Policy For Subset Selection. WSC Gongbo Zhang, Yijie Peng, Jianghua Zhang, Enlu Zhou
2021	—	`conf`	Gradient-Based Simulation Optimization for Economic Design of Control Charts. CASE Gongbo Zhang, Yijie Peng, Shuhuai Yang
2021	J	`jnl`	Insights from the P Wave Travel Time Tomography in the Upper Mantle Beneath the Central Philippines. Remote. Sens. Huiyan Shi, Tonglin Li, Rui Sun, Gongbo Zhang, Rongzhe Zhang, Xinze Kang
2021	J	`jnl`	Structural Characteristics of Moho Surface Based on Time Series Function of Natural Earthquakes. Remote. Sens. Xuelei Li, Zhuo Jia, Nanqiao Du, Yi Xu, Gongbo Zhang
2021	J	`jnl`	Utilizing image and caption information for biomedical document classification. Bioinform. Pengyuan Li, Xiangying Jiang, Gongbo Zhang, Juan Trelles Trabucco, Daniela Raciti, Cynthia L. Smith, Martin Ringwald, G. Elisabeta Marai, Cecilia N. Arighi, Hagit Shatkay
2020	—	`conf`	Dynamic Sampling Allocation for Selecting a Good Enough Alternative. CASE Gongbo Zhang, Chun-Hung Chen, Qing-Shan Jia, Yijie Peng
2020	Misc	`conf`	Sequential Sampling for a Ranking and Selection Problem with Exponential Sampling Distributions. WSC Gongbo Zhang, Haidong Li, Yijie Peng
2019	J	`jnl`	An effective biomedical document classification scheme in support of biocuration: addressing class imbalance. Database J. Biol. Databases Curation Xiangying Jiang, Martin Ringwald, Judith A. Blake, Cecilia N. Arighi, Gongbo Zhang, Hagit Shatkay
2018	—	`conf`	Identifying Experimental Evidence in Biomedical Abstracts Relevant to Drug-Drug Interactions. BCB Gongbo Zhang, Debarati Roychowdhury, Pengyuan Li, Heng-Yi Wu, Shijun Zhang, Lang Li, Hagit Shatkay
2017	—	`conf`	Identifying articles relevant to drug-drug interaction: Addressing class imbalance. BIBM Gongbo Zhang, Moumita Bhattacharya, Heng-Yi Wu, Pengyuan Li, Lang Li, Hagit Shatkay
2015	A*	`conf`	Closing the Gap: Domain Adaptation from Explicit to Implicit Discourse Relations. EMNLP Yangfeng Ji, Gongbo Zhang, Jacob Eisenstein
2015	J	`jnl`	On the benefits of digital libraries of case studies of analogical design: Documentation, access, analysis, and learning. Artif. Intell. Eng. Des. Anal. Manuf. Ashok K. Goel, Gongbo Zhang, Bryan Wiltgen, Yuqi Zhang, Swaroop Vattam, Jeannette Yen