Glenn Hickey

20 papers B 3C 1Misc 1Journal 13Unranked 2
YearRankTypeTitle / Venue / Authors
2021 J jnl
Efficient dynamic variation graphs.
Bioinform.
Jordan M. Eizenga, Adam M. Novak, Emily Kobayashi, Flavia Villani, Cecilia Cisar, Simon Heumos, Glenn Hickey, Vincenza Colonna, Benedict Paten, Erik Garrison
2019 J jnl
Sequence tube maps: making graph genomes intuitive to commuters.
Bioinform.
Wolfgang Beyer, Adam M. Novak, Glenn Hickey, Jeffrey Chan, Vanessa Tan, Benedict Paten, Daniel R. Zerbino
2018 J jnl
Superbubbles, Ultrabubbles, and Cacti.
J. Comput. Biol.
Benedict Paten, Jordan M. Eizenga, Yohei M. Rosen, Adam M. Novak, Erik Garrison, Glenn Hickey
2017 B conf
Superbubbles, Ultrabubbles and Cacti.
RECOMB
Benedict Paten, Adam M. Novak, Erik Garrison, Glenn Hickey
2016 J jnl
Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs.
BMC Bioinform.
Daniel R. Zerbino, Tracy Ballinger, Benedict Paten, Glenn Hickey, David Haussler
2015 J jnl
Building a Pan-Genome Reference for a Population.
J. Comput. Biol.
Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian J. Raney, Dent Earl, Joel Armstrong, W. James Kent, David Haussler, Benedict Paten
2015 J jnl
The UCSC Genome Browser database: 2015 update.
Nucleic Acids Res.
Kate R. Rosenbloom, Joel Armstrong, Galt P. Barber, Jonathan Casper, Hiram Clawson, Mark Diekhans, Timothy R. Dreszer, Pauline A. Fujita, Luvina Guruvadoo, Maximilian Haeussler, Rachel A. Harte, Steven G. Heitner, Glenn Hickey, Angie S. Hinrichs, Robert Hubley, Donna Karolchik, Katrina Learned, Brian T. Lee, Chin H. Li, Karen H. Miga, Ngan Nguyen, Benedict Paten, Brian J. Raney, Arian F. A. Smit, Matthew L. Speir, Ann S. Zweig, David Haussler, Robert M. Kuhn, W. James Kent
2014 J jnl
A unifying model of genome evolution under parsimony.
BMC Bioinform.
Benedict Paten, Daniel R. Zerbino, Glenn Hickey, David Haussler
2014 B conf
Building a Pangenome Reference for a Population.
RECOMB
Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian J. Raney, Dent Earl, Joel Armstrong, David Haussler, Benedict Paten
2014 J jnl
Comparative assembly hubs: Web-accessible browsers for comparative genomics.
Bioinform.
Ngan Nguyen, Glenn Hickey, Brian J. Raney, Joel Armstrong, Hiram Clawson, Ann S. Zweig, Donna Karolchik, William James Kent, David Haussler, Benedict Paten
2013 J jnl
HAL: a hierarchical format for storing and analyzing multiple genome alignments.
Bioinform.
Glenn Hickey, Benedict Paten, Dent Earl, Daniel R. Zerbino, David Haussler
2011 B conf
A Probabilistic Model for Sequence Alignment with Context-Sensitive Indels.
RECOMB
Glenn Hickey, Mathieu Blanchette
2011 J jnl
A Probabilistic Model for Sequence Alignment with Context-Sensitive Indels.
J. Comput. Biol.
Glenn Hickey, Mathieu Blanchette
2011 J jnl
An Approximation Algorithm for the Noah's Ark Problem with Random Feature Loss.
IEEE ACM Trans. Comput. Biol. Bioinform.
Glenn Hickey, Mathieu Blanchette, Paz Carmi, Anil Maheshwari, Norbert Zeh
2010 Misc conf
A Practical Algorithm for Estimation of the Maximum Likelihood Ancestral Reconstruction Error.
Pacific Symposium on Biocomputing
Glenn Hickey, Mathieu Blanchette
2010 J jnl
Parallel catastrophe modelling on a Cell/BE.
Int. J. Parallel Emergent Distributed Syst.
Frank K. H. A. Dehne, Glenn Hickey, Andrew Rau-Chaplin, Mark Byrne
2009 — conf
Parallel catastrophe modelling on a cell processor.
CASCON
Frank K. H. A. Dehne, Glenn Hickey, Andrew Rau-Chaplin, Mark Byrne
2008 J jnl
NAPX: A Polynomial Time Approximation Scheme for the Noah's Ark Problem
CoRR
Glenn Hickey, Paz Carmi, Anil Maheshwari, Norbert Zeh
2008 C conf
NAPX: A Polynomial Time Approximation Scheme for the Noah's Ark Problem.
WABI
Glenn Hickey, Paz Carmi, Anil Maheshwari, Norbert Zeh
2005 — conf
Fast Parallel Maximum Likelihood-Based Protein Phylogeny.
PDCS
Christian Blouin, Davin Butt, Glenn Hickey, Andrew Rau-Chaplin