Giulia Paciello

14 papers B 1Journal 4Unranked 8

Year	Rank	Type	Title / Venue / Authors
2022	B	`conf`	Explaining Crash Predictions on Multivariate Time Series Data. DS Francesco Spinnato, Riccardo Guidotti, Mirco Nanni, Daniele Maccagnola, Giulia Paciello, Antonio Bencini Farina
2021	J	`jnl`	FUNGI: FUsioN Gene Integration toolset. Bioinform. Alejandra Cervera, Heidi Rausio, Tiia Kähkönen, Noora Andersson, Gabriele Partel, Ville Rantanen, Giulia Paciello, Elisa Ficarra, Johanna Hynninen, Sakari Hietanen, Olli Carpén, Rainer Lehtonen, Sampsa Hautaniemi, Kaisa Huhtinen
2018	—	`conf`	geneEx - A Novel Tool to Assess Differential Expression from Gene and Exon Sequencing Data. BIOINFORMATICS Orazio M. Scicolone, Giulia Paciello, Elisa Ficarra
2017	—	`—`	Bioinformatics methods and tools for identifying disease-associated B-cell populations, miRNA patterns and gene fusions in RNA-Seq data. Giulia Paciello
2017	J	`jnl`	FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples. BMC Bioinform. Giulia Paciello, Elisa Ficarra
2016	J	`jnl`	isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation. BMC Bioinform. Gianvito Urgese, Giulia Paciello, Andrea Acquaviva, Elisa Ficarra
2014	—	`conf`	A Novel Pipeline for Identification and Prioritization of Gene Fusions in Patient-derived Xenografts of Metastatic Colorectal Cancer. BIOINFORMATICS Giulia Paciello, Andrea Acquaviva, Consalvo Petti, Claudio Isella, Enzo Medico, Elisa Ficarra
2014	—	`conf`	Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimization. IWBBIO Gianvito Urgese, Giulia Paciello, Andrea Acquaviva, Elisa Ficarra, Mariagrazia Graziano, Maurizio Zamboni
2014	—	`conf`	miR-SEA: miRNA Seed Extension based Aligner Pipeline for NGS Expression Level Extraction. IWBBIO Gianvito Urgese, Giulia Paciello, Claudio Isella, Enzo Medico, Enrico Macii, Elisa Ficarra, Andrea Acquaviva
2013	—	`conf`	A Novel Pipeline for V(D)J Junction Identification using RNA-Seq Paired-end Reads. BIOINFORMATICS Giulia Paciello, Elisa Ficarra, Alberto Zamò, Chiara Pighi, Carmelo Foti, Francesco Abate, Enrico Macii, Andrea Acquaviva
2012	—	`conf`	A Novel Analysis Flow for Fused Transcripts Discovery from Paired-end RNA-Seq Data. BIOINFORMATICS Francesco Abate, Giulia Paciello, Andrea Acquaviva, Elisa Ficarra, Alberto Ferrarini, Massimo Delledonne, Enrico Macii
2012	J	`jnl`	Bellerophontes: an RNA-Seq data analysis framework for chimeric transcripts discovery based on accurate fusion model. Bioinform. Francesco Abate, Andrea Acquaviva, Giulia Paciello, Carmelo Foti, Elisa Ficarra, Alberto Ferrarini, Massimo Delledonne, Ilaria Iacobucci, Simona Soverini, Giovanni Martinelli, Enrico Macii
2011	—	`conf`	A novel framework for chimeric transcript detection based on accurate gene fusion model. BIBM Workshops Francesco Abate, Andrea Acquaviva, Elisa Ficarra, Giulia Paciello, Enrico Macii, Alberto Ferrarini, Massimo Delledonne, Simona Soverini, Giovanni Martinelli
2011	—	`conf`	Binding Free Energy Calculation via Molecular Dynamics Simulations for a miRNA: mRNA Interaction. BIOINFORMATICS Giulia Paciello, Andrea Acquaviva, Elisa Ficarra, M. A. Deriu, A. Grosso, Enrico Macii