Giorgio Colombo

25 papers A 1Journal 23Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Common characteristics of variants linked to autism spectrum disorder in the WAVE regulatory complex.
Frontiers Comput. Neurosci.
Song Xie, Ke Zuo, Silvia De Rubeis, Giorgio Bonollo, Giorgio Colombo, Paolo Ruggerone, Paolo Carloni
2025 J jnl
Impact of Genetic Variants Associated with Neurodevelopmental Disorders on the WAVE Regulatory Complex.
J. Chem. Inf. Model.
Song Xie, Ke Zuo, Silvia De Rubeis, Giorgio Bonollo, Giorgio Colombo, Paolo Ruggerone, Paolo Carloni
2024 J jnl
Design and Test of Molecules that Interfere with the Recognition Mechanisms between the SARS-CoV-2 Spike Protein and Its Host Cell Receptors.
J. Chem. Inf. Model.
Francesca Scantamburlo, Ionica Masgras, Francesco Ciscato, Claudio Laquatra, Francesco Frigerio, Fabrizio Cinquini, Silvia Pavoni, Alice Triveri, Elena Frasnetti, Stefano A. Serapian, Giorgio Colombo, Andrea Rasola, Elisabetta Moroni
2023 J jnl
Integrating Protein Interaction Surface Prediction with a Fragment-Based Drug Design: Automatic Design of New Leads with Fragments on Energy Surfaces.
J. Chem. Inf. Model.
Luca Torielli, Stefano A. Serapian, Lara Mussolin, Elisabetta Moroni, Giorgio Colombo
2021 J jnl
SARS-CoV-2 Spike Protein Mutations and Escape from Antibodies: A Computational Model of Epitope Loss in Variants of Concern.
J. Chem. Inf. Model.
Alice Triveri, Stefano A. Serapian, Filippo Marchetti, Filippo Doria, Silvia Pavoni, Fabrizio Cinquini, Elisabetta Moroni, Andrea Rasola, Francesco Frigerio, Giorgio Colombo
2020 J jnl
Mechanistic Model for the Hsp90-Driven Opening of Human Argonaute.
J. Chem. Inf. Model.
Silvia Rinaldi, Giorgio Colombo, Antonella Paladino
2019 J jnl
Impact of Mutations on NPAC Structural Dynamics: Mechanistic Insights from MD Simulations.
J. Chem. Inf. Model.
Marco Montefiori, Simona Pilotto, Chiara Marabelli, Elisabetta Moroni, Mariarosaria Ferraro, Stefano A. Serapian, Andrea Mattevi, Giorgio Colombo
2019 — conf
Molecular Dynamics Performance Evaluation with Modern Computer Architecture.
NUMTA (2)
Emanuele Breuza, Giorgio Colombo, Daniele Gregori, Filippo Marchetti
2017 J jnl
High Affinity vs. Native Fibronectin in the Modulation of αvβ3 Integrin Conformational Dynamics: Insights from Computational Analyses and Implications for Molecular Design.
PLoS Comput. Biol.
Antonella Paladino, Monica Civera, Laura Belvisi, Giorgio Colombo
2017 J jnl
SAGE: A Fast Computational Tool for Linear Epitope Grafting onto a Foreign Protein Scaffold.
J. Chem. Inf. Model.
Riccardo Capelli, Filippo Marchetti, Guido Tiana, Giorgio Colombo
2017 J jnl
Unraveling Energy and Dynamics Determinants to Interpret Protein Functional Plasticity: The Limonene-1, 2-epoxide-hydrolase Case Study.
J. Chem. Inf. Model.
Silvia Rinaldi, Alessandro Gori, Celeste Annovazzi, Erica E. Ferrandi, Daniela Monti, Giorgio Colombo
2016 J jnl
Structure-based approach for identification of novel phenylboronic acids as serine-β-lactamase inhibitors.
J. Comput. Aided Mol. Des.
Jacopo Sgrignani, Filomena De Luca, Hayarpi Torosyan, Jean-Denis Docquier, Da Duan, Beatrice Novati, Fabio Prati, Giorgio Colombo, Giovanni Grazioso
2015 J jnl
Covalent docking of selected boron-based serine beta-lactamase inhibitors.
J. Comput. Aided Mol. Des.
Jacopo Sgrignani, Beatrice Novati, Giorgio Colombo, Giovanni Grazioso
2015 J jnl
Structural Stability and Flexibility Direct the Selection of Activating Mutations in Epidermal Growth Factor Receptor Kinase.
J. Chem. Inf. Model.
Antonella Paladino, Giulia Morra, Giorgio Colombo
2014 J jnl
Computational Approaches Elucidate the Allosteric Mechanism of Human Aromatase Inhibition: A Novel Possible Route to Small-Molecule Regulation of CYP450s Activities?
J. Chem. Inf. Model.
Jacopo Sgrignani, Marta Bon, Giorgio Colombo, Alessandra Magistrato
2014 J jnl
Exploiting Conformational Dynamics in Drug Discovery: Design of C-Terminal Inhibitors of Hsp90 with Improved Activities.
J. Chem. Inf. Model.
Elisabetta Moroni, Huiping Zhao, Brian S. J. Blagg, Giorgio Colombo
2013 J jnl
Energetic and Dynamic Aspects of the Affinity Maturation Process: Characterizing Improved Variants from the Bevacizumab Antibody with Molecular Simulations.
J. Chem. Inf. Model.
Dario Corrada, Giorgio Colombo
2012 J jnl
Corresponding Functional Dynamics across the Hsp90 Chaperone Family: Insights from a Multiscale Analysis of MD Simulations.
PLoS Comput. Biol.
Giulia Morra, Raffaello Potestio, Cristian Micheletti, Giorgio Colombo
2012 J jnl
Molecular Mechanism of Allosteric Communication in Hsp70 Revealed by Molecular Dynamics Simulations.
PLoS Comput. Biol.
Federica Chiappori, Ivan Merelli, Giorgio Colombo, Luciano Milanesi, Giulia Morra
2011 J jnl
A Multiscale Approach to Characterize the Early Aggregation Steps of the Amyloid-Forming Peptide GNNQQNY from the Yeast Prion Sup-35.
PLoS Comput. Biol.
Jessica Nasica-Labouze, Massimiliano Meli, Philippe Derreumaux, Giorgio Colombo, Normand Mousseau
2009 J jnl
Modeling Signal Propagation Mechanisms and Ligand-Based Conformational Dynamics of the Hsp90 Molecular Chaperone Full-Length Dimer.
PLoS Comput. Biol.
Giulia Morra, Gennady Verkhivker, Giorgio Colombo
2008 J jnl
Molecular simulation of multistate peptide dynamics: A comparison between microsecond timescale sampling and multiple shorter trajectories.
J. Comput. Chem.
Luca Monticelli, Eric J. Sorin, D. Peter Tieleman, Vijay S. Pande, Giorgio Colombo
2007 A conf
Ab initio protein structure prediction with a dipeptide-assembly evolutionary algorithm.
GECCO
Andrea Bazzoli, Giorgio Colombo, Andrea Tettamanzi
2005 J jnl
A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators.
BMC Bioinform.
Federico Fogolari, Silvio C. E. Tosatto, Giorgio Colombo
2001 J jnl
Simulation of carbohydrate-protein interactions: Computer-aided design of a second generation GM1 mimic.
J. Comput. Aided Mol. Des.
Anna Bernardi, Marta Galgano, Laura Belvisi, Giorgio Colombo