Gill Bejerano

29 papers A* 4B 3C 1Journal 17Unranked 3
YearRankTypeTitle / Venue / Authors
2022 J jnl
WhichTF is functionally important in your open chromatin data?
PLoS Comput. Biol.
Yosuke Tanigawa, Ethan Dyer, Gill Bejerano
2021 J jnl
Avoiding genetic racial profiling in criminal DNA profile databases.
Nat. Comput. Sci.
Jacob A. Blindenbach, Karthik Anand Jagadeesh, Gill Bejerano, David J. Wu
2019 A* conf
Darwin-WGA: A Co-processor Provides Increased Sensitivity in Whole Genome Alignments with High Speedup.
HPCA
Yatish Turakhia, Sneha D. Goenka, Gill Bejerano, William J. Dally
2019 — conf
Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read Assembly.
USENIX ATC
Yatish Turakhia, Gill Bejerano, William J. Dally
2019 J jnl
Darwin: A Genomics Coprocessor.
IEEE Micro
Yatish Turakhia, Gill Bejerano, William J. Dally
2018 A* conf
Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read Assembly.
ASPLOS
Yatish Turakhia, Gill Bejerano, William J. Dally
2016 J jnl
Erosion of Conserved Binding Sites in Personal Genomes Points to Medical Histories.
PLoS Comput. Biol.
Harendra Guturu, Sandeep Chinchali, Shoa L. Clarke, Gill Bejerano
2014 J jnl
Automated Discovery of Tissue-Targeting Enhancers and Transcription Factors from Binding Motif and Gene Function Data.
PLoS Comput. Biol.
Geetu Tuteja, Karen Betancourt Moreira, Tisha Chung, Jenny Chen, Aaron M. Wenger, Gill Bejerano
2007 J jnl
The UCSC genome browser database: update 2007.
Nucleic Acids Res.
Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Heather Trumbower, Daryl J. Thomas, Archana Thakkapallayil, Charles W. Sugnet, Mario Stanke, Kayla E. Smith, Adam C. Siepel, Kate R. Rosenbloom, Brooke L. Rhead, Brian J. Raney, Andy Pohl, Jakob Skou Pedersen, Fan Hsu, Angela S. Hinrichs, Rachel A. Harte, Mark Diekhans, Hiram Clawson, Gill Bejerano, Galt P. Barber, Robert Baertsch, David Haussler, W. James Kent
2006 J jnl
Branch and bound computation of exact
Bioinform.
Gill Bejerano
2006 J jnl
Identification and Classification of Conserved RNA Secondary Structures in the Human Genome.
PLoS Comput. Biol.
Jakob Skou Pedersen, Gill Bejerano, Adam C. Siepel, Kate R. Rosenbloom, Kerstin Lindblad-Toh, Eric S. Lander, Jim Kent, Webb Miller, David Haussler
2006 J jnl
The UCSC Genome Browser Database: update 2006.
Nucleic Acids Res.
Angela S. Hinrichs, Donna Karolchik, Robert Baertsch, Galt P. Barber, Gill Bejerano, Hiram Clawson, Mark Diekhans, Terrence S. Furey, Rachel A. Harte, Fan Hsu, Jennifer Hillman-Jackson, Robert M. Kuhn, Jakob Skou Pedersen, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Adam C. Siepel, Kayla E. Smith, Charles W. Sugnet, A. Sultan-Qurraie, Daryl J. Thomas, Heather Trumbower, Ryan J. Weber, M. Weirauch, Ann S. Zweig, David Haussler, W. James Kent
2004 J jnl
Algorithms for variable length Markov chain modeling.
Bioinform.
Gill Bejerano
2004 J jnl
Efficient Exact p-Value Computation for Small Sample, Sparse, and Surprising Categorical Data.
J. Comput. Biol.
Gill Bejerano, Nir Friedman, Naftali Tishby
2004 — conf
Into the heart of darkness: large-scale clustering of human non-coding DNA.
ISMB/ECCB (Supplement of Bioinformatics)
Gill Bejerano, David Haussler, Mathieu Blanchette
2003 — —
Automata learning and stocahstic modeling for biosequence analysis (למידת אוטומטים ומידול סטוכסטי לצרכי ניתוח רצפי מולקולות ביולוגיות.).
Gill Bejerano
2003 J jnl
Discriminative Feature Selection via Multiclass Variable Memory Markov Model.
EURASIP J. Adv. Signal Process.
Noam Slonim, Gill Bejerano, Shai Fine, Naftali Tishby
2003 B conf
Efficient exact value computation and applications to biosequence analysis.
RECOMB
Gill Bejerano
2003 J jnl
Using Machine-Learning Methods for Musical Style Modeling.
Computer
Shlomo Dubnov, Gérard Assayag, Olivier Lartillot, Gill Bejerano
2002 A* conf
Discriminative Feature Selection via Multiclass Variable Memory Markov Model.
ICML
Noam Slonim, Gill Bejerano, Shai Fine, Naftali Tishby
2001 C conf
A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites.
WABI
Yoseph Barash, Gill Bejerano, Nir Friedman
2001 — conf
Automatic Modeling of Musical Style.
ICMC
Olivier Lartillot, Shlomo Dubnov, Gérard Assayag, Gill Bejerano
2001 J jnl
Markovian domain fingerprinting: statistical segmentation of protein sequences.
Bioinform.
Gill Bejerano, Yevgeny Seldin, Hanah Margalit, Naftali Tishby
2001 J jnl
PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites.
Nucleic Acids Res.
Ruti Hershberg, Gill Bejerano, Alberto Santos-Zavaleta, Hanah Margalit
2001 A* conf
Unsupervised Sequence Segmentation by a Mixture of Switching Variable Memory Markov Sources.
ICML
Yevgeny Seldin, Gill Bejerano, Naftali Tishby
2001 J jnl
Variations on probabilistic suffix trees: statistical modeling and prediction of protein families.
Bioinform.
Gill Bejerano, Golan Yona
2000 J jnl
Optimal Amnesic Probabilistic Automata or How to Learn and Classify Proteins in Linear Time and Space.
J. Comput. Biol.
Alberto Apostolico, Gill Bejerano
2000 B conf
Optimal amnesic probabilistic automata or how to learn and classify proteins in linear time and space.
RECOMB
Alberto Apostolico, Gill Bejerano
1999 B conf
Modeling protein families using probabilistic suffix trees.
RECOMB
Gill Bejerano, Golan Yona