Gil Alterovitz

70 papers B 1C 4Misc 13Journal 44Unranked 8

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	A unified protein embedding model with local and global structural sensitivity. Briefings Bioinform. Jerry Xu, Shaojun Pei, Gil Alterovitz
2025	C	`conf`	Decoding Aging: Multi-Omics Insights into Oxidative Stress, Mitochondrial Dysfunction, and Cellular Senescence in Fibroblasts. CIBCB Rajarshi Mandal, Ning Xie, Gil Alterovitz
2024	J	`jnl`	A General-purpose AI Avatar in Healthcare. CoRR Nicholas Yan, Gil Alterovitz
2023	J	`jnl`	Informing the ethical review of human subjects research utilizing artificial intelligence. Frontiers Comput. Sci. Christos A. Makridis, Anthony Boese, Rafael Fricks, Don E. Workman, Molly Klote, Joshua Mueller, Isabel J. Hildebrandt, Michael Kim, Gil Alterovitz
2023	J	`jnl`	Introducing HL7 FHIR Genomics Operations: a developer-friendly approach to genomics-EHR integration. J. Am. Medical Informatics Assoc. Robert H. Dolin, Bret S. E. Heale, Gil Alterovitz, Rohan Gupta, Justin Aronson, Aziz A. Boxwala, Shaileshbhai R. Gothi, David Haines, Arthur Hermann, Tonya Hongsermeier, Ammar Husami, James Jones, Frank Naeymi-Rad, Barbara Rapchak, Chandan Ravishankar, James Shalaby, May Terry, Ning Xie, Powell Zhang, Srikar Chamala
2023	J	`jnl`	Predicting ward transfer mortality with machine learning. Frontiers Artif. Intell. José Lezama, Gil Alterovitz, Colleen E. Jakey, Ana L. Kraus, Michael J. Kim, Andrew A. Borkowski
2023	—	`conf`	Transfer Learning for Mortality Prediction in Non-Small Cell Lung Cancer with Low-Resolution Histopathology Slide Snapshots. MedInfo Matthew Clark, Christopher Meyer, Jaime Ramos-Cejudo, Danne C. Elbers, Karen E. Pierce-Murray, Rafael Fricks, Gil Alterovitz, Luigi Rao, Mary T. Brophy, Nhan V. Do, Robert L. Grossman, Nathanael R. Fillmore
2022	J	`jnl`	A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources. J. Am. Medical Informatics Assoc. Ken Wiley, Laura Findley, Madison Goldrich, Tejinder K. Rakhra-Burris, Ana Stevens, Pamela Williams, Carol J. Bult, Rex L. Chisholm, Patricia Deverka, Geoffrey S. Ginsburg, Eric D. Green, Gail P. Jarvik, George A. Mensah, Erin Ramos, Mary V. Relling, Dan M. Roden, Robb Rowley, Gil Alterovitz, Samuel J. Aronson, Lisa Bastarache, James J. Cimino, Erin L. Crowgey, Guilherme Del Fiol, Robert R. Freimuth, Mark A. Hoffman, Janina M. Jeff, Kevin B. Johnson, Kensaku Kawamoto, Subha Madhavan, Eneida A. Mendonça, Lucila Ohno-Machado, Siddharth Pratap, Casey Overby Taylor, Marylyn D. Ritchie, Nephi Walton, Chunhua Weng, Teresa Zayas-Cabán, Teri A. Manolio, Marc S. Williams
2021	Misc	`conf`	AI for infectious disease modelling and therapeutics. PSB Gil Alterovitz, Wei-Lun Alterovitz, Gail H. Cassell, Lixin Zhang, A. Keith Dunker
2021	J	`jnl`	An explainable machine learning platform for pyrazinamide resistance prediction and genetic feature identification of Mycobacterium tuberculosis. J. Am. Medical Informatics Assoc. Andrew Zhang, Ling Teng, Gil Alterovitz
2021	Misc	`conf`	How Much Does the (Social) Environment Matter? Using Artificial Intelligence to Predict COVID-19 Outcomes with Socio-demographic Data. PSB Christos A. Makridis, Anish Mudide, Gil Alterovitz
2021	J	`jnl`	Interoperable genetic lab test reports: mapping key data elements to HL7 FHIR specifications and professional reporting guidelines. J. Am. Medical Informatics Assoc. Aly Khalifa, Clinton C. Mason, Jennifer H. Garvin, Marc S. Williams, Guilherme Del Fiol, Brian R. Jackson, Steven B. Bleyl, Gil Alterovitz, Stanley M. Huff
2021	J	`jnl`	Leveraging machine learning to characterize the role of socio-economic determinants on physical health and well-being among veterans. Comput. Biol. Medicine Christos A. Makridis, David Y. Zhao, Cosmin Adrian Bejan, Gil Alterovitz
2021	Misc	`conf`	SARS-CoV-2 Drug Discovery based on Intrinsically Disordered Regions. PSB Anish Mudide, Gil Alterovitz
2021	J	`jnl`	Transfer Learning Based Multi-Objective Evolutionary Algorithm for Community Detection of Dynamic Complex Networks. CoRR Jungang Zou, Fan Lin, Beizhan Wang, Siyu Gao, Gaoshan Deng, Wenhua Zeng, Gil Alterovitz
2021	J	`jnl`	netAE: semi-supervised dimensionality reduction of single-cell RNA sequencing to facilitate cell labeling. Bioinform. Zhengyang Dong, Gil Alterovitz
2021	J	`jnl`	vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration. BMC Bioinform. Robert H. Dolin, Shaileshbhai R. Gothi, Aziz A. Boxwala, Bret S. E. Heale, Ammar Husami, James Jones, Himanshu Khangar, Shubham Londhe, Frank Naeymi-Rad, Soujanya Rao, Barbara Rapchak, James Shalaby, Varun Suraj, Ning Xie, Srikar Chamala, Gil Alterovitz
2020	J	`jnl`	An efficient causal structure learning algorithm for linear arbitrarily distributed continuous data. J. Supercomput. Jing Yang, Na Li, Ning An, Yu Chen, Gil Alterovitz
2020	J	`jnl`	Digital personal health libraries: a systematic literature review. CoRR Huitong Ding, Chi Zhang, Ning An, Lingling Zhang, Ning Xie, Gil Alterovitz
2020	Misc	`conf`	Personal Cognitive Health Library. AMIA Lingling Zhang, Ning An, Huitong Ding, Ning Xie, Chi Zhang, Gil Alterovitz
2020	J	`jnl`	Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity. J. Am. Medical Informatics Assoc. Nathan D. Seligson, Jeremy L. Warner, William S. Dalton, David Martin, Robert S. Miller, Debra Patt, Kenneth L. Kehl, Matvey B. Palchuk, Gil Alterovitz, Laura K. Wiley, Ming Huang, Feichen Shen, Yanshan Wang, Khoa A. Nguyen, Anthony F. Wong, Funda Meric-Bernstam, Elmer V. Bernstam, James L. Chen
2020	B	`conf`	Smoky Mountain Data Challenge 2020: An Open Call to Solve Data Problems in the Areas of Neutron Science, Material Science, Urban Modeling and Dynamics, Geophysics, and Biomedical Informatics. SMC Suzanne Parete-Koon, Peter F. Peterson, Garrett E. Granroth, Wenduo Zhou, Pravallika Devineni, Nouamane Laanait, Junqi Yin, Albina Y. Borisevich, Ketan Maheshwari, Melissa R. Allen-Dumas, Srinath Ravulaparthy, Kuldeep R. Kurte, Jibo Sanyal, Anne Berres, Olivera Kotevska, Folami Alamudun, Keith Gray, Max Grossman, Anar Yusifov, Ioana Danciu, Gil Alterovitz, Dasha Herrmannova
2019	J	`jnl`	Deep Probabilistic Matrix Factorization Framework for Online Collaborative Filtering. IEEE Access Kangkang Li, Xiuze Zhou, Fan Lin, Wenhua Zeng, Gil Alterovitz
2019	J	`jnl`	Extracting causal relations from the literature with word vector mapping. Comput. Biol. Medicine Ning An, Yongbo Xiao, Jing Yuan, Jiaoyun Yang, Gil Alterovitz
2019	J	`jnl`	Predicting of Associations Between MicroRNA and Human Diseases Based on Multiple Similarities and Arbitrarily-Order Proximity Network Embedding. IEEE Access Xiujin Wu, Wenhua Zeng, Yuxiu Xu, Beizhan Wang, Xiangrong Liu, Fan Lin, Gil Alterovitz
2019	J	`jnl`	Sparse online collaborative filtering with dynamic regularization. Inf. Sci. Kangkang Li, Xiuze Zhou, Fan Lin, Wenhua Zeng, Beizhan Wang, Gil Alterovitz
2018	J	`jnl`	Subtype dependent biomarker identification and tumor classification from gene expression profiles. Knowl. Based Syst. Aiguo Wang, Ning An, Guilin Chen, Li Liu, Gil Alterovitz
2017	J	`jnl`	Biobrick chain recommendations for genetic circuit design. Comput. Biol. Medicine Jiaoyun Yang, Song Yu, Bowen Gong, Ning An, Gil Alterovitz
2017	J	`jnl`	Nonlinear dimensionality reduction methods for synthetic biology biobricks' visualization. BMC Bioinform. Jiaoyun Yang, Haipeng Wang, Huitong Ding, Ning An, Gil Alterovitz
2017	J	`jnl`	SNP by SNP by environment interaction network of alcoholism. BMC Syst. Biol. Amin Zollanvari, Gil Alterovitz
2017	J	`jnl`	Wrapper-based gene selection with Markov blanket. Comput. Biol. Medicine Aiguo Wang, Ning An, Jing Yang, Guilin Chen, Lian Li, Gil Alterovitz
2016	J	`jnl`	A Partial Correlation Statistic Structure Learning Algorithm Under Linear Structural Equation Models. IEEE Trans. Knowl. Data Eng. Jing Yang, Ning An, Gil Alterovitz
2016	J	`jnl`	Classification of hospital acquired complications using temporal clinical information from a large electronic health record. J. Biomed. Informatics Jeremy L. Warner, Peijin Zhang, Jenny Liu, Gil Alterovitz
2016	J	`jnl`	Gene expression prediction using low-rank matrix completion. BMC Bioinform. Arnav Kapur, Kshitij Marwah, Gil Alterovitz
2016	J	`jnl`	SMART precision cancer medicine: a FHIR-based app to provide genomic information at the point of care. J. Am. Medical Informatics Assoc. Jeremy L. Warner, Matthew J. Rioth, Kenneth D. Mandl, Joshua C. Mandel, David A. Kreda, Isaac S. Kohane, Daniel Carbone, Ross Oreto, Lucy Wang, Shilin Zhu, Heming Yao, Gil Alterovitz
2015	J	`jnl`	Accelerating wrapper-based feature selection with K-nearest-neighbor. Knowl. Based Syst. Aiguo Wang, Ning An, Guilin Chen, Lian Li, Gil Alterovitz
2015	J	`jnl`	Improving PLS-RFE based gene selection for microarray data classification. Comput. Biol. Medicine Aiguo Wang, Ning An, Guilin Chen, Lian Li, Gil Alterovitz
2015	J	`jnl`	Predicting hypertension without measurement: A non-invasive, questionnaire-based approach. Expert Syst. Appl. Aiguo Wang, Ning An, Guilin Chen, Lian Li, Gil Alterovitz
2015	J	`jnl`	SMART on FHIR Genomics: facilitating standardized clinico-genomic apps. J. Am. Medical Informatics Assoc. Gil Alterovitz, Jeremy L. Warner, Peijin Zhang, Yishen Chen, Mollie Ullman-Cullere, David A. Kreda, Isaac S. Kohane
2015	J	`jnl`	Seeing the forest through the trees: uncovering phenomic complexity through interactive network visualization. J. Am. Medical Informatics Assoc. Jeremy L. Warner, Joshua C. Denny, David A. Kreda, Gil Alterovitz
2014	—	`conf`	Accelerating incremental wrapper based gene selection with K-Nearest-Neighbor. BIBM Aiguo Wang, Ning An, Guilin Chen, Lian Li, Gil Alterovitz
2014	—	`conf`	Bayesian Prognostic Model for Genomic Discovery in Bipolar Disorder. BIOINFORMATICS Swetha S. Bobba, Amin Zollanvari, Gil Alterovitz
2014	—	`conf`	Incremental wrapper based gene selection with Markov blanket. BIBM Aiguo Wang, Ning An, Guilin Chen, Jing Yang, Lian Li, Gil Alterovitz
2014	J	`jnl`	Modified Anderson-Darling Test-Based Target Detector in Non-Homogenous Environments. Sensors Yang Li, Yinsheng Wei, Bingfei Li, Gil Alterovitz
2013	—	`conf`	Analytic Approaches to Phenotypic Complexity. MedInfo Jeremy L. Warner, Joshua C. Denny, David A. Kreda, Gil Alterovitz
2013	—	`conf`	Automated Synthesis and Visualization of a Chemotherapy Treatment Regimen Network. MedInfo Jeremy L. Warner, Peter C. Yang, Gil Alterovitz
2013	J	`jnl`	Brief communication: External phenome analysis enables a rational federated query strategy to detect changing rates of treatment-related complications associated with multiple myeloma. J. Am. Medical Informatics Assoc. Jeremy L. Warner, Gil Alterovitz, Kelly Bodio, Robin M. Joyce
2013	—	`conf`	Causal discovery based on healthcare information. BIBM Jing Yang, Ning An, Gil Alterovitz, Lian Li, Aiguo Wang
2013	Misc	`conf`	Constructing a Novel Cancer Ontology. AMIA Michael C. Gao, Jeremy L. Warner, Peter C. Yang, Gil Alterovitz
2013	Misc	`conf`	Phenometric analysis of electronic health records: a new approach to visualization of high dimensional biomedical information. AMIA Jeremy L. Warner, Quan Ding, David A. Kreda, Zi'ou Zheng, Keshav Gupta, Joshua C. Denny, Gil Alterovitz
2013	Misc	`conf`	Sharing of Genomic Information: Perspectives from Stakeholders. AMIA Jeremy L. Warner, Gil Alterovitz, Joshua C. Denny, Robert Fassett, Kevin S. Hughes
2012	Misc	`conf`	Phenome-Based Analysis as a Means for Discovering Context-Dependent Clinical Reference Ranges. AMIA Jeremy L. Warner, Gil Alterovitz
2012	J	`jnl`	Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities. Briefings Bioinform. Chang F. Quo, Chanchala Kaddi, John H. Phan, Amin Zollanvari, Mingqing Xu, May D. Wang, Gil Alterovitz
2011	—	`conf`	Is the reduction of dimensionality to a small number of features always necessary in constructing predictive models for analysis of complex diseases or behaviours? EMBC Amin Zollanvari, Nancy L. Saccone, Laura J. Bierut, Marco Ramoni, Gil Alterovitz
2011	Misc	`conf`	Session Introduction. Pacific Symposium on Biocomputing Gil Alterovitz, Silvio Cavalcanti, Taro Muso, Marco Ramoni, May Wang
2010	J	`jnl`	Introduction to the special issue on information theory in molecular biology and neuroscience. IEEE Trans. Inf. Theory Olgica Milenkovic, Gil Alterovitz, Gerard Battail, Todd P. Coleman, Joachim Hagenauer, Sean P. Meyn, Nathan D. Price, Marco Ramoni, Ilya Shmulevich, Wojciech Szpankowski
2010	J	`jnl`	Mapping transcription mechanisms from multimodal genomic data. BMC Bioinform. Hsun-Hsien Chang, Michael J. McGeachie, Gil Alterovitz, Marco Ramoni
2010	Misc	`conf`	Session Introduction. Pacific Symposium on Biocomputing Gil Alterovitz, Silvio Cavalcanti, Taro Muso, Marco Ramoni, May Wang
2010	J	`jnl`	The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms. Briefings Bioinform. Gil Alterovitz, Taro Muso, Marco Ramoni
2009	Misc	`conf`	Session Introduction. Pacific Symposium on Biocomputing Gil Alterovitz, Judith A. Blake, Jonathan M. Dreyfuss, Drew Endy, Marco Ramoni
2008	C	`conf`	An information theoretic framework for genomic data analysis. BIBE Aaron McKenna, Gil Alterovitz
2008	J	`jnl`	Automated programming for bioinformatics algorithm deployment. Bioinform. Gil Alterovitz, Adnaan Jiwaji, Marco Ramoni
2008	Misc	`conf`	System-Wide Peripheral Biomarker Discovery Using Information Theory. Pacific Symposium on Biocomputing Gil Alterovitz, Michael Xiang, Jonathan Liu, Amelia Chang, Marco Ramoni
2007	C	`conf`	A Systematic Approach to Quantifying Evolutionary Functional Trends Across the Universal Tree of Life. BIBE Gil Alterovitz, Taro Muso, Paresh Malalur, Marco Ramoni
2007	J	`jnl`	Bioinformatics and Proteomics: An Engineering Problem Solving-Based Approach. IEEE Trans. Educ. Gil Alterovitz, Marco Ramoni
2007	J	`jnl`	Erratum to "Bioinformatics and Proteomics: An Engineering Problem Solving-Based Approach". IEEE Trans. Educ. Gil Alterovitz, Marco Ramoni
2007	J	`jnl`	GO PaD: the Gene Ontology Partition Database. Nucleic Acids Res. Gil Alterovitz, Michael Xiang, Mamta Mohan, Marco Ramoni
2007	C	`conf`	Linking Protein Mass with Function via Organismal Massome Networks. BIBE Gil Alterovitz, Eugenia Lyashenko, Michael Xiang, Marco Ramoni
2006	Misc	`conf`	Discovering Biological Guilds through Topological Abstraction. AMIA Gil Alterovitz, Marco Ramoni
2006	J	`jnl`	Gene Lethality Detection and Characterization via Topological Analysis of Regulatory Networks. IEEE Trans. Circuits Syst. I Regul. Pap. Gil Alterovitz, Vinayak Muralidhar, Marco Ramoni