Ghassan Hamarneh

321 papers A* 12A 3B 11C 1Misc 2Journal 151Unranked 138

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	AI for Just Work: Constructing Diverse Imaginations of AI beyond "Replacing Humans". CoRR Weina Jin, Nicholas Vincent, Ghassan Hamarneh
2025	J	`jnl`	BiasPruner: Mitigating bias transfer in continual learning for fair medical image analysis. Medical Image Anal. Nourhan Bayasi, Jamil Fayyad, Alceu Bissoto, Ghassan Hamarneh, Rafeef Garbi
2025	J	`jnl`	Closing the multichannel gap through computational reconstruction of interaction in super-resolution microscopy. Patterns Ben Cardoen, Hanene Ben Yedder, Ivan Robert Nabi, Ghassan Hamarneh
2025	A	`conf`	Debiasify: Self-Distillation for Unsupervised Bias Mitigation. WACV Nourhan Bayasi, Jamil Fayyad, Ghassan Hamarneh, Rafeef Garbi, Homayoun Najjaran
2025	—	`conf`	Disentangled PET Lesion Segmentation. ISBI Tanya Gatsak, Kumar Abhishek, Hanene Ben Yedder, Saeid Asgari Taghanaki, Ghassan Hamarneh
2025	J	`jnl`	Ethical Medical Image Synthesis. CoRR Weina Jin, Ashish Sinha, Kumar Abhishek, Ghassan Hamarneh
2025	J	`jnl`	IMA++: ISIC Archive Multi-Annotator Dermoscopic Skin Lesion Segmentation Dataset. CoRR Kumar Abhishek, Jeremy Kawahara, Ghassan Hamarneh
2025	J	`jnl`	Learning What NOT to Count. CoRR Adriano C. D'Alessandro, Ali Mahdavi-Amiri, Ghassan Hamarneh
2025	J	`jnl`	Making Power Explicable in AI: Analyzing, Understanding, and Redirecting Power to Operationalize Ethics in AI Technical Practice. CoRR Weina Jin, Elise Li Zheng, Ghassan Hamarneh
2025	A*	`conf`	SMITE: Segment Me In TimE. ICLR Amirhossein Alimohammadi, Sauradip Nag, Saeid Asgari Taghanaki, Andrea Tagliasacchi, Ghassan Hamarneh, Ali Mahdavi-Amiri
2025	J	`jnl`	SuperResNET: Model-Free Single-Molecule Network Analysis Software Achieves Molecular Resolution of Nup96. Adv. Intell. Syst. Yahongyang Lydia Li, Ismail M. Khater, Christian Hallgrimson, Ben Cardoen, Timothy H. Wong, Ghassan Hamarneh, Ivan Robert Nabi
2025	J	`jnl`	SuperResNET: Model-Free Single-Molecule Network Analysis Software Achieves Molecular Resolution of Nup96. Adv. Intell. Syst. Yahongyang Lydia Li, Ismail M. Khater, Christian Hallgrimson, Ben Cardoen, Timothy H. Wong, Ghassan Hamarneh, Ivan Robert Nabi
2025	—	`conf`	What Can We Learn from Inter-Annotator Variability in Skin Lesion Segmentation? ISIC@MICCAI Kumar Abhishek, Jeremy Kawahara, Ghassan Hamarneh
2025	J	`jnl`	What Can We Learn from Inter-Annotator Variability in Skin Lesion Segmentation? CoRR Kumar Abhishek, Jeremy Kawahara, Ghassan Hamarneh
2024	—	`conf`	AFreeCA: Annotation-Free Counting for All. ECCV (4) Adriano C. D'Alessandro, Ali Mahdavi-Amiri, Ghassan Hamarneh
2024	J	`jnl`	AFreeCA: Annotation-Free Counting for All. CoRR Adriano C. D'Alessandro, Ali Mahdavi-Amiri, Ghassan Hamarneh
2024	—	`conf`	BiasPruner: Debiased Continual Learning for Medical Image Classification. MICCAI (10) Nourhan Bayasi, Jamil Fayyad, Alceu Bissoto, Ghassan Hamarneh, Rafeef Garbi
2024	J	`jnl`	BiasPruner: Debiased Continual Learning for Medical Image Classification. CoRR Nourhan Bayasi, Jamil Fayyad, Alceu Bissoto, Ghassan Hamarneh, Rafeef Garbi
2024	—	`conf`	Continual-Zoo: Leveraging Zoo Models for Continual Classification of Medical Images. CVPR Workshops Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
2024	J	`jnl`	Debiasify: Self-Distillation for Unsupervised Bias Mitigation. CoRR Nourhan Bayasi, Jamil Fayyad, Ghassan Hamarneh, Rafeef Garbi, Homayoun Najjaran
2024	J	`jnl`	Deep orthogonal multi-wavelength fusion for tomogram-free diagnosis in diffuse optical imaging. Comput. Biol. Medicine Hanene Ben Yedder, Ben Cardoen, Majid Shokoufi, Farid Golnaraghi, Ghassan Hamarneh
2024	J	`jnl`	DermSynth3D: Synthesis of in-the-wild annotated dermatology images. Medical Image Anal. Ashish Sinha, Jeremy Kawahara, Arezou Pakzad, Kumar Abhishek, Matthieu Ruthven, Enjie Ghorbel, Anis Kacem, Djamila Aouada, Ghassan Hamarneh
2024	J	`jnl`	Disentangled PET Lesion Segmentation. CoRR Tanya Gatsak, Kumar Abhishek, Hanene Ben Yedder, Saeid Asgari Taghanaki, Ghassan Hamarneh
2024	J	`jnl`	Evaluating the clinical utility of artificial intelligence assistance and its explanation on the glioma grading task. Artif. Intell. Medicine Weina Jin, Mostafa Fatehi, Ru Guo, Ghassan Hamarneh
2024	J	`jnl`	GC IEEE Trans. Medical Imaging Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
2024	J	`jnl`	Investigating the Quality of DermaMNIST and Fitzpatrick17k Dermatological Image Datasets. CoRR Kumar Abhishek, Aditi Jain, Ghassan Hamarneh
2024	—	`conf`	Lesion Elevation Prediction from Skin Images Improves Diagnosis. ISIC/iMIMIC/EARTH/DeCaF@MICCAI Kumar Abhishek, Ghassan Hamarneh
2024	J	`jnl`	Lesion Elevation Prediction from Skin Images Improves Diagnosis. CoRR Kumar Abhishek, Ghassan Hamarneh
2024	J	`jnl`	Multi-sample ζ-mixup: richer, more realistic synthetic samples from a p-series interpolant. J. Big Data Kumar Abhishek, Colin J. Brown, Ghassan Hamarneh
2024	J	`jnl`	Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields. CoRR Ashish Sinha, Ghassan Hamarneh
2024	A*	`conf`	SLiMe: Segment Like Me. ICLR Aliasghar Khani, Saeid Asgari Taghanaki, Aditya Sanghi, Ali Mahdavi-Amiri, Ghassan Hamarneh
2024	J	`jnl`	SMITE: Segment Me In TimE. CoRR Amirhossein Alimohammadi, Sauradip Nag, Saeid Asgari Taghanaki, Andrea Tagliasacchi, Ghassan Hamarneh, Ali Mahdavi-Amiri
2024	—	`conf`	Segmentation Style Discovery: Application to Skin Lesion Images. ISIC/iMIMIC/EARTH/DeCaF@MICCAI Kumar Abhishek, Jeremy Kawahara, Ghassan Hamarneh
2024	J	`jnl`	Segmentation Style Discovery: Application to Skin Lesion Images. CoRR Kumar Abhishek, Jeremy Kawahara, Ghassan Hamarneh
2024	—	`conf`	TrIND: Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields. MICCAI (12) Ashish Sinha, Ghassan Hamarneh
2023	J	`jnl`	A survey on deep learning for skin lesion segmentation. Medical Image Anal. Zahra Mirikharaji, Kumar Abhishek, Alceu Bissoto, Catarina Barata, Sandra Avila, Eduardo Valle, M. Emre Celebi, Ghassan Hamarneh
2023	J	`jnl`	AI-based analysis of super-resolution microscopy: Biological discovery in the absence of ground truth. CoRR Ivan Robert Nabi, Ben Cardoen, Ismail M. Khater, Guang Gao, Timothy H. Wong, Ghassan Hamarneh
2023	—	`conf`	AViT: Adapting Vision Transformers for Small Skin Lesion Segmentation Datasets. ISIC/Care-AI/MedAGI/DeCaF@MICCAI Siyi Du, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
2023	J	`jnl`	AViT: Adapting Vision Transformers for Small Skin Lesion Segmentation Datasets. CoRR Siyi Du, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
2023	—	`conf`	Continual-GEN: Continual Group Ensembling for Domain-agnostic Skin Lesion Classification. ISIC/Care-AI/MedAGI/DeCaF@MICCAI Nourhan Bayasi, Siyi Du, Ghassan Hamarneh, Rafeef Garbi
2023	J	`jnl`	DermSynth3D: Synthesis of in-the-wild Annotated Dermatology Images. CoRR Ashish Sinha, Jeremy Kawahara, Arezou Pakzad, Kumar Abhishek, Matthieu Ruthven, Enjie Ghorbel, Anis Kacem, Djamila Aouada, Ghassan Hamarneh
2023	J	`jnl`	Guidelines and evaluation of clinical explainable AI in medical image analysis. Medical Image Anal. Weina Jin, Xiaoxiao Li, Mostafa Fatehi, Ghassan Hamarneh
2023	J	`jnl`	Image denoising in the deep learning era. Artif. Intell. Rev. Saeed Izadi, Darren B. Sutton, Ghassan Hamarneh
2023	J	`jnl`	Invisible Users: Uncovering End-Users' Requirements for Explainable AI via Explanation Forms and Goals. CoRR Weina Jin, Jianyu Fan, Diane Gromala, Philippe Pasquier, Ghassan Hamarneh
2023	—	`conf`	Learning-to-Count by Learning-to-Rank. CRV Adriano C. D'Alessandro, Ali Mahdavi-Amiri, Ghassan Hamarneh
2023	—	`conf`	MDViT: Multi-domain Vision Transformer for Small Medical Image Segmentation Datasets. MICCAI (4) Siyi Du, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
2023	J	`jnl`	MDViT: Multi-domain Vision Transformer for Small Medical Image Segmentation Datasets. CoRR Siyi Du, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
2023	J	`jnl`	Mouth2Audio: intelligible audio synthesis from videos with distinctive vowel articulation. Int. J. Speech Technol. Saurabh Garg, Haoyao Ruan, Ghassan Hamarneh, Dawn M. Behne, Allard Jongman, Joan A. Sereno, Yue Wang
2023	J	`jnl`	Plain-to-clear speech video conversion for enhanced intelligibility. Int. J. Speech Technol. Shubam Sachdeva, Haoyao Ruan, Ghassan Hamarneh, Dawn M. Behne, Allard Jongman, Joan A. Sereno, Yue Wang
2023	J	`jnl`	Rethinking AI Explainability and Plausibility. CoRR Weina Jin, Xiaoxiao Li, Ghassan Hamarneh
2023	J	`jnl`	SLiMe: Segment Like Me. CoRR Aliasghar Khani, Saeid Asgari Taghanaki, Aditya Sanghi, Ali Mahdavi-Amiri, Ghassan Hamarneh
2023	J	`jnl`	SYRAC: Synthesize, Rank, and Count. CoRR Adriano C. D'Alessandro, Ali Mahdavi-Amiri, Ghassan Hamarneh
2022	J	`jnl`	A Survey on Deep Learning for Skin Lesion Segmentation. CoRR Zahra Mirikharaji, Catarina Barata, Kumar Abhishek, Alceu Bissoto, Sandra Avila, Eduardo Valle, M. Emre Celebi, Ghassan Hamarneh
2022	J	`jnl`	Active deep learning from a noisy teacher for semi-supervised 3D image segmentation: Application to COVID-19 pneumonia infection in CT. Comput. Medical Imaging Graph. Mohammad Arafat Hussain, Zahra Mirikharaji, Mohammad Momeny, Mahmoud Marhamati, Ali Asghar Neshat, Rafeef Garbi, Ghassan Hamarneh
2022	A*	`conf`	BoosterNet: Improving Domain Generalization of Deep Neural Nets using Culpability-Ranked Features. CVPR Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
2022	—	`conf`	CIRCLe: Color Invariant Representation Learning for Unbiased Classification of Skin Lesions. ECCV Workshops (4) Arezou Pakzad, Kumar Abhishek, Ghassan Hamarneh
2022	J	`jnl`	CIRCLe: Color Invariant Representation Learning for Unbiased Classification of Skin Lesions. CoRR Arezou Pakzad, Kumar Abhishek, Ghassan Hamarneh
2022	J	`jnl`	DEEMD: Drug Efficacy Estimation Against SARS-CoV-2 Based on Cell Morphology With Deep Multiple Instance Learning. IEEE Trans. Medical Imaging M. Sadegh Saberian, Kathleen P. Moriarty, Andrea D. Olmstead, Christian Hallgrimson, François Jean, Ivan Robert Nabi, Maxwell W. Libbrecht, Ghassan Hamarneh
2022	—	`conf`	Deep Multimodal Guidance for Medical Image Classification. MICCAI (8) Mayur Mallya, Ghassan Hamarneh
2022	J	`jnl`	Deep Multimodal Guidance for Medical Image Classification. CoRR Mayur Mallya, Ghassan Hamarneh
2022	A*	`conf`	Evaluating Explainable AI on a Multi-Modal Medical Imaging Task: Can Existing Algorithms Fulfill Clinical Requirements? AAAI Weina Jin, Xiaoxiao Li, Ghassan Hamarneh
2022	J	`jnl`	Evaluating Explainable AI on a Multi-Modal Medical Imaging Task: Can Existing Algorithms Fulfill Clinical Requirements? CoRR Weina Jin, Xiaoxiao Li, Ghassan Hamarneh
2022	—	`conf`	FairDisCo: Fairer AI in Dermatology via Disentanglement Contrastive Learning. ECCV Workshops (4) Siyi Du, Ben Hers, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
2022	J	`jnl`	FairDisCo: Fairer AI in Dermatology via Disentanglement Contrastive Learning. CoRR Siyi Du, Ben Hers, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
2022	J	`jnl`	Guidelines and evaluation for clinical explainable AI on medical image analysis. CoRR Weina Jin, Xiaoxiao Li, Mostafa Fatehi, Ghassan Hamarneh
2022	A*	`conf`	MaskTune: Mitigating Spurious Correlations by Forcing to Explore. NeurIPS Saeid Asgari Taghanaki, Aliasghar Khani, Fereshte Khani, Ali Gholami, Linh Tran, Ali Mahdavi-Amiri, Ghassan Hamarneh
2022	J	`jnl`	MaskTune: Mitigating Spurious Correlations by Forcing to Explore. CoRR Saeid Asgari Taghanaki, Aliasghar Khani, Fereshte Khani, Ali Gholami, Linh Tran, Ali Mahdavi-Amiri, Ghassan Hamarneh
2022	J	`jnl`	Multi-Sample ζ-mixup: Richer, More Realistic Synthetic Samples from a p-Series Interpolant. CoRR Kumar Abhishek, Colin J. Brown, Ghassan Hamarneh
2022	J	`jnl`	Multitask Deep Learning Reconstruction and Localization of Lesions in Limited Angle Diffuse Optical Tomography. IEEE Trans. Medical Imaging Hanene Ben Yedder, Ben Cardoen, Majid Shokoufi, Farid Golnaraghi, Ghassan Hamarneh
2022	J	`jnl`	Skin3D: Detection and longitudinal tracking of pigmented skin lesions in 3D total-body textured meshes. Medical Image Anal. Mengliu Zhao, Jeremy Kawahara, Kumar Abhishek, Sajjad Shamanian, Ghassan Hamarneh
2022	J	`jnl`	Testing the Ability of Convolutional Neural Networks to Learn Radiomic Features. Comput. Methods Programs Biomed. Ivan S. Klyuzhin, Yixi Xu, Anthony Ortiz, Juan M. Lavista Ferres, Ghassan Hamarneh, Arman Rahmim
2022	J	`jnl`	Transcending XAI Algorithm Boundaries through End-User-Inspired Design. CoRR Weina Jin, Jianyu Fan, Diane Gromala, Philippe Pasquier, Xiaoxiao Li, Ghassan Hamarneh
2021	—	`ch.`	AECNN: Adversarial and Enhanced Convolutional Neural Networks. Computer-Aided Analysis of Gastrointestinal Videos Saeed Izadi, Ghassan Hamarneh
2021	J	`jnl`	Cascaded Regression Neural Nets for Kidney Localization and Segmentation-free Volume Estimation. IEEE Trans. Medical Imaging Mohammad Arafat Hussain, Ghassan Hamarneh, Rafeef Garbi
2021	—	`conf`	Culprit-Prune-Net: Efficient Continual Sequential Multi-domain Learning with Application to Skin Lesion Classification. MICCAI (7) Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi
2021	—	`conf`	D-LEMA: Deep Learning Ensembles From Multiple Annotations - Application to Skin Lesion Segmentation. CVPR Workshops Zahra Mirikharaji, Kumar Abhishek, Saeed Izadi, Ghassan Hamarneh
2021	J	`jnl`	DEEMD: Drug Efficacy Estimation against SARS-CoV-2 based on cell Morphology with Deep multiple instance learning. CoRR M. Sadegh Saberian, Kathleen P. Moriarty, Andrea D. Olmstead, Ivan Robert Nabi, François Jean, Maxwell W. Libbrecht, Ghassan Hamarneh
2021	J	`jnl`	Deep learning for biomedical image reconstruction: a survey. Artif. Intell. Rev. Hanene Ben Yedder, Ben Cardoen, Ghassan Hamarneh
2021	J	`jnl`	Deep semantic segmentation of natural and medical images: a review. Artif. Intell. Rev. Saeid Asgari Taghanaki, Kumar Abhishek, Joseph Paul Cohen, Julien Cohen-Adad, Ghassan Hamarneh
2021	J	`jnl`	Detection and Longitudinal Tracking of Pigmented Skin Lesions in 3D Total-Body Skin Textured Meshes. CoRR Mengliu Zhao, Jeremy Kawahara, Sajjad Shamanian, Kumar Abhishek, Priyanka Chandrashekar, Ghassan Hamarneh
2021	J	`jnl`	EUCA: A Practical Prototyping Framework towards End-User-Centered Explainable Artificial Intelligence. CoRR Weina Jin, Jianyu Fan, Diane Gromala, Philippe Pasquier, Ghassan Hamarneh
2021	J	`jnl`	Learnable image histograms-based deep radiomics for renal cell carcinoma grading and staging. Comput. Medical Imaging Graph. Mohammad Arafat Hussain, Ghassan Hamarneh, Rafeef Garbi
2021	J	`jnl`	Learning-to-augment strategy using noisy and denoised data: Improving generalizability of deep CNN for the detection of COVID-19 in X-ray images. Comput. Biol. Medicine Mohammad Momeny, Ali Asghar Neshat, Mohammad Arafat Hussain, Solmaz S. Kia, Mahmoud Marhamati, Ahmad Jahanbakhshi, Ghassan Hamarneh
2021	—	`conf`	Matthews Correlation Coefficient Loss For Deep Convolutional Networks: Application To Skin Lesion Segmentation. ISBI Kumar Abhishek, Ghassan Hamarneh
2021	J	`jnl`	One Map Does Not Fit All: Evaluating Saliency Map Explanation on Multi-Modal Medical Images. CoRR Weina Jin, Xiaoxiao Li, Ghassan Hamarneh
2020	J	`jnl`	A Review of Super-Resolution Single-Molecule Localization Microscopy Cluster Analysis and Quantification Methods. Patterns Ismail M. Khater, Ivan Robert Nabi, Ghassan Hamarneh
2020	J	`jnl`	D-LEMA: Deep Learning Ensembles from Multiple Annotations - Application to Skin Lesion Segmentation. CoRR Zahra Mirikharaji, Kumar Abhishek, Saeed Izadi, Ghassan Hamarneh
2020	J	`jnl`	Deep Learning for Biomedical Image Reconstruction: A Survey. CoRR Hanene Ben Yedder, Ben Cardoen, Ghassan Hamarneh
2020	J	`jnl`	ERGO: Efficient Recurrent Graph Optimized Emitter Density Estimation in Single Molecule Localization Microscopy. IEEE Trans. Medical Imaging Ben Cardoen, Hanene Ben Yedder, Anmol Sharma, Keng C. Chou, Ivan Robert Nabi, Ghassan Hamarneh
2020	—	`conf`	Illumination-based Transformations Improve Skin Lesion Segmentation in Dermoscopic Images. CVPR Workshops Kumar Abhishek, Ghassan Hamarneh, Mark S. Drew
2020	J	`jnl`	Illumination-based Transformations Improve Skin Lesion Segmentation in Dermoscopic Images. CoRR Kumar Abhishek, Ghassan Hamarneh, Mark S. Drew
2020	J	`jnl`	Matthews Correlation Coefficient Loss for Deep Convolutional Networks: Application to Skin Lesion Segmentation. CoRR Kumar Abhishek, Ghassan Hamarneh
2020	J	`jnl`	Missing MRI Pulse Sequence Synthesis Using Multi-Modal Generative Adversarial Network. IEEE Trans. Medical Imaging Anmol Sharma, Ghassan Hamarneh
2020	—	`conf`	Patch-Based Non-local Bayesian Networks for Blind Confocal Microscopy Denoising. MICCAI (5) Saeed Izadi, Ghassan Hamarneh
2020	J	`jnl`	Patch-based Non-Local Bayesian Networks for Blind Confocal Microscopy Denoising. CoRR Saeed Izadi, Ghassan Hamarneh
2020	—	`conf`	Scanner Invariant Multiple Sclerosis Lesion Segmentation from MRI. ISBI Shahab Aslani, Vittorio Murino, Michael Dayan, Roger C. Tam, Diego Sona, Ghassan Hamarneh
2019	A*	`conf`	A Kernelized Manifold Mapping to Diminish the Effect of Adversarial Perturbations. CVPR Saeid Asgari Taghanaki, Kumar Abhishek, Shekoofeh Azizi, Ghassan Hamarneh
2019	J	`jnl`	A Kernelized Manifold Mapping to Diminish the Effect of Adversarial Perturbations. CoRR Saeid Asgari Taghanaki, Kumar Abhishek, Shekoofeh Azizi, Ghassan Hamarneh
2019	J	`jnl`	Applying Artificial Intelligence to Glioma Imaging: Advances and Challenges. CoRR Weina Jin, Mostafa Fatehi, Kumar Abhishek, Mayur Mallya, Brian Toyota, Ghassan Hamarneh
2019	J	`jnl`	Combo loss: Handling input and output imbalance in multi-organ segmentation. Comput. Medical Imaging Graph. Saeid Asgari Taghanaki, Yefeng Zheng, Shaohua Kevin Zhou, Bogdan Georgescu, Puneet Sharma, Daguang Xu, Dorin Comaniciu, Ghassan Hamarneh
2019	J	`jnl`	Computer-vision analysis reveals facial movements made during Mandarin tone production align with pitch trajectories. Speech Commun. Saurabh Garg, Ghassan Hamarneh, Allard Jongman, Joan A. Sereno, Yue Wang
2019	J	`jnl`	Deep Learning Models for Digital Pathology. CoRR Aïcha BenTaieb, Ghassan Hamarneh
2019	J	`jnl`	Deep Semantic Segmentation of Natural and Medical Images: A Review. CoRR Saeid Asgari Taghanaki, Kumar Abhishek, Joseph Paul Cohen, Julien Cohen-Adad, Ghassan Hamarneh
2019	J	`jnl`	Fully Convolutional Neural Networks to Detect Clinical Dermoscopic Features. IEEE J. Biomed. Health Informatics Jeremy Kawahara, Ghassan Hamarneh
2019	—	`conf`	Generalizable Feature Learning in the Presence of Data Bias and Domain Class Imbalance with Application to Skin Lesion Classification. MICCAI (4) Chris Yoon, Ghassan Hamarneh, Rafeef Garbi
2019	J	`jnl`	Identification of caveolin-1 domain signatures via machine learning and graphlet analysis of single-molecule super-resolution data. Bioinform. Ismail M. Khater, Fanrui Meng, Ivan Robert Nabi, Ghassan Hamarneh
2019	—	`conf`	ImHistNet: Learnable Image Histogram Based DNN with Application to Noninvasive Determination of Carcinoma Grades in CT Scans. MICCAI (6) Mohammad Arafat Hussain, Ghassan Hamarneh, Rafeef Garbi
2019	—	`conf`	Image Super Resolution via Bilinear Pooling: Application to Confocal Endomicroscopy. MLMIR@MICCAI Saeed Izadi, Darren B. Sutton, Ghassan Hamarneh
2019	J	`jnl`	Image Super Resolution via Bilinear Pooling: Application to Confocal Endomicroscopy. CoRR Saeed Izadi, Darren B. Sutton, Ghassan Hamarneh
2019	—	`conf`	Improved Inference via Deep Input Transfer. MICCAI (6) Saeid Asgari Taghanaki, Kumar Abhishek, Ghassan Hamarneh
2019	J	`jnl`	Improved Inference via Deep Input Transfer. CoRR Saeid Asgari Taghanaki, Kumar Abhishek, Ghassan Hamarneh
2019	—	`conf`	InfoMask: Masked Variational Latent Representation to Localize Chest Disease. MICCAI (6) Saeid Asgari Taghanaki, Mohammad Havaei, Tess Berthier, Francis Dutil, Lisa Di-Jorio, Ghassan Hamarneh, Yoshua Bengio
2019	J	`jnl`	InfoMask: Masked Variational Latent Representation to Localize Chest Disease. CoRR Saeid Asgari Taghanaki, Mohammad Havaei, Tess Berthier, Francis Dutil, Lisa Di-Jorio, Ghassan Hamarneh, Yoshua Bengio
2019	—	`conf`	Learning to Segment Skin Lesions from Noisy Annotations. DART/MIL3ID@MICCAI Zahra Mirikharaji, Yiqi Yan, Ghassan Hamarneh
2019	J	`jnl`	Learning to Segment Skin Lesions from Noisy Annotations. CoRR Zahra Mirikharaji, Yiqi Yan, Ghassan Hamarneh
2019	—	`conf`	Limited-Angle Diffuse Optical Tomography Image Reconstruction Using Deep Learning. MICCAI (1) Hanene Ben Yedder, Majid Shokoufi, Ben Cardoen, Farid Golnaraghi, Ghassan Hamarneh
2019	—	`conf`	Mask2Lesion: Mask-Constrained Adversarial Skin Lesion Image Synthesis. SASHIMI@MICCAI Kumar Abhishek, Ghassan Hamarneh
2019	J	`jnl`	Mask2Lesion: Mask-Constrained Adversarial Skin Lesion Image Synthesis. CoRR Kumar Abhishek, Ghassan Hamarneh
2019	—	`conf`	Melanoma Recognition via Visual Attention. IPMI Yiqi Yan, Jeremy Kawahara, Ghassan Hamarneh
2019	J	`jnl`	Missing MRI Pulse Sequence Synthesis using Multi-Modal Generative Adversarial Network. CoRR Anmol Sharma, Ghassan Hamarneh
2019	J	`jnl`	Predictive connectome subnetwork extraction with anatomical and connectivity priors. Comput. Medical Imaging Graph. Colin J. Brown, Steven P. Miller, Brian G. Booth, Jill G. Zwicker, Ruth E. Grunau, Anne R. Synnes, Vann Chau, Ghassan Hamarneh
2019	—	`conf`	Renal Cell Carcinoma Staging with Learnable Image Histogram-Based Deep Neural Network. MLMI@MICCAI Mohammad Arafat Hussain, Ghassan Hamarneh, Rafeef Garbi
2019	—	`conf`	Retinal Image Classification via Vasculature-Guided Sequential Attention. ICCV Workshops Mengliu Zhao, Ghassan Hamarneh
2019	J	`jnl`	Scanner Invariant Multiple Sclerosis Lesion Segmentation from MRI. CoRR Shahab Aslani, Vittorio Murino, Michael Dayan, Roger C. Tam, Diego Sona, Ghassan Hamarneh
2019	—	`conf`	Select, Attend, and Transfer: Light, Learnable Skip Connections. MLMI@MICCAI Saeid Asgari Taghanaki, Aïcha BenTaieb, Anmol Sharma, Shaohua Kevin Zhou, Yefeng Zheng, Bogdan Georgescu, Puneet Sharma, Zhoubing Xu, Dorin Comaniciu, Ghassan Hamarneh
2019	J	`jnl`	Seven-Point Checklist and Skin Lesion Classification Using Multitask Multimodal Neural Nets. IEEE J. Biomed. Health Informatics Jeremy Kawahara, Sara Daneshvar, Giuseppe Argenziano, Ghassan Hamarneh
2019	J	`jnl`	Signed Input Regularization. CoRR Saeid Asgari Taghanaki, Kumar Abhishek, Ghassan Hamarneh
2019	J	`jnl`	Special issue on machine learning in medical imaging. Comput. Medical Imaging Graph. Li Wang, Yinghuan Shi, Heung-Il Suk, J. Alison Noble, Ghassan Hamarneh
2019	—	`conf`	Tree-LSTM: Using LSTM to Encode Memory in Anatomical Tree Prediction from 3D Images. MLMI@MICCAI Mengliu Zhao, Ghassan Hamarneh
2019	J	`jnl`	Visual Diagnosis of Dermatological Disorders: Human and Machine Performance. CoRR Jeremy Kawahara, Ghassan Hamarneh
2019	B	`conf`	Weakly supervised fully convolutional network for PET lesion segmentation. Image Processing Saeedeh Afshari, Aïcha BenTaieb, Zahra Mirikharaji, Ghassan Hamarneh
2019	—	`conf`	WhiteNNer-Blind Image Denoising via Noise Whiteness Priors. ICCV Workshops Saeed Izadi, Zahra Mirikharaji, Mengliu Zhao, Ghassan Hamarneh
2019	J	`jnl`	WhiteNNer-Blind Image Denoising via Noise Whiteness Priors. CoRR Saeed Izadi, Zahra Mirikharaji, Mengliu Zhao, Ghassan Hamarneh
2018	J	`jnl`	Adversarial Stain Transfer for Histopathology Image Analysis. IEEE Trans. Medical Imaging Aïcha BenTaieb, Ghassan Hamarneh
2018	J	`jnl`	Automatic localization of normal active organs in 3D PET scans. Comput. Medical Imaging Graph. Saeedeh Afshari, Aïcha BenTaieb, Ghassan Hamarneh
2018	—	`conf`	Can Deep Learning Relax Endomicroscopy Hardware Miniaturization Requirements? MICCAI (1) Saeed Izadi, Kathleen P. Moriarty, Ghassan Hamarneh
2018	J	`jnl`	Can Deep Learning Relax Endomicroscopy Hardware Miniaturization Requirements? CoRR Saeed Izadi, Kathleen P. Moriarty, Ghassan Hamarneh
2018	J	`jnl`	Combo Loss: Handling Input and Output Imbalance in Multi-Organ Segmentation. CoRR Saeid Asgari Taghanaki, Yefeng Zheng, Shaohua Kevin Zhou, Bogdan Georgescu, Puneet Sharma, Daguang Xu, Dorin Comaniciu, Ghassan Hamarneh
2018	—	`conf`	Connectome priors in deep neural networks to predict autism. ISBI Colin J. Brown, Jeremy Kawahara, Ghassan Hamarneh
2018	—	`conf`	Deep Learning Based Image Reconstruction for Diffuse Optical Tomography. MLMIR@MICCAI Hanene Ben Yedder, Aïcha BenTaieb, Majid Shokoufi, Amir Zahiremami, Farid Golnaraghi, Ghassan Hamarneh
2018	—	`conf`	Deep auto-context fully convolutional neural network for skin lesion segmentation. ISBI Zahra Mirikharaji, Saeed Izadi, Jeremy Kawahara, Ghassan Hamarneh
2018	—	`conf`	Generative adversarial networks to segment skin lesions. ISBI Saeed Izadi, Zahra Mirikharaji, Jeremy Kawahara, Ghassan Hamarneh
2018	Misc	`conf`	Joint Gender-, Tone-, Vowel- Classification Via Novel Hierarchical Classification for Annotation of Monosyllabic Mandarin Word Tokens. ICASSP Saurabh Garg, Ghassan Hamarneh, Allard Jongman, Joan A. Sereno, Yue Wang
2018	—	`conf`	Noninvasive Determination of Gene Mutations in Clear Cell Renal Cell Carcinoma Using Multiple Instance Decisions Aggregated CNN. MICCAI (2) Mohammad Arafat Hussain, Ghassan Hamarneh, Rafeef Garbi
2018	—	`conf`	Predicting Cancer with a Recurrent Visual Attention Model for Histopathology Images. MICCAI (2) Aïcha BenTaieb, Ghassan Hamarneh
2018	J	`jnl`	Segmentation and Measurement of Chronic Wounds for Bioprinting. IEEE J. Biomed. Health Informatics Peyman Gholami, Mohammad Ali Ahmadi-Pajouh, Nabiollah Abolftahi, Ghassan Hamarneh, Mohammad Kayvanrad
2018	J	`jnl`	Segmentation-free direct tumor volume and metabolic activity estimation from PET scans. Comput. Medical Imaging Graph. Saeid Asgari Taghanaki, Nóirín Duggan, Hillgan Ma, Xinchi Hou, Anna Celler, François Bénard, Ghassan Hamarneh
2018	J	`jnl`	Select, Attend, and Transfer: Light, Learnable Skip Connections. CoRR Saeid Asgari Taghanaki, Aïcha BenTaieb, Anmol Sharma, Shaohua Kevin Zhou, Yefeng Zheng, Bogdan Georgescu, Puneet Sharma, Sasa Grbic, Zhoubing Xu, Dorin Comaniciu, Ghassan Hamarneh
2018	—	`conf`	Star Shape Prior in Fully Convolutional Networks for Skin Lesion Segmentation. MICCAI (4) Zahra Mirikharaji, Ghassan Hamarneh
2018	J	`jnl`	Star Shape Prior in Fully Convolutional Networks for Skin Lesion Segmentation. CoRR Zahra Mirikharaji, Ghassan Hamarneh
2018	—	`conf`	TreeNet: Multi-loss Deep Learning Network to Predict Branch Direction for Extracting 3D Anatomical Trees. DLMIA/ML-CDS@MICCAI Mengliu Zhao, Ghassan Hamarneh
2018	—	`conf`	Vulnerability Analysis of Chest X-Ray Image Classification Against Adversarial Attacks. MLCN/DLF/iMIMIC@MICCAI Saeid Asgari Taghanaki, Arkadeep Das, Ghassan Hamarneh
2018	J	`jnl`	Vulnerability Analysis of Chest X-Ray Image Classification Against Adversarial Attacks. CoRR Saeid Asgari Taghanaki, Arkadeep Das, Ghassan Hamarneh
2017	J	`jnl`	A structured latent model for ovarian carcinoma subtyping from histopathology slides. Medical Image Anal. Aïcha BenTaieb, Hector Li-Chang, David G. Huntsman, Ghassan Hamarneh
2017	—	`conf`	Bifurcation Localization in 3D Images via Evolutionary Geometric Deformable Templates. CRV Mengliu Zhao, Ghassan Hamarneh
2017	J	`jnl`	BrainNetCNN: Convolutional neural networks for brain networks; towards predicting neurodevelopment. NeuroImage Jeremy Kawahara, Colin J. Brown, Steven P. Miller, Brian G. Booth, Vann Chau, Ruth E. Grunau, Jill G. Zwicker, Ghassan Hamarneh
2017	—	`conf`	Collage CNN for Renal Cell Carcinoma Detection from CT. MLMI@MICCAI Mohammad Arafat Hussain, Alborz Amir-Khalili, Ghassan Hamarneh, Rafeef Abugharbieh
2017	J	`jnl`	Evaluation of Three Algorithms for the Segmentation of Overlapping Cervical Cells. IEEE J. Biomed. Health Informatics Zhi Lu, Gustavo Carneiro, Andrew P. Bradley, Daniela Ushizima, Masoud S. Nosrati, Andrea G. C. Bianchi, Cláudia M. Carneiro, Ghassan Hamarneh
2017	J	`jnl`	Fully Convolutional Networks to Detect Clinical Dermoscopic Features. CoRR Jeremy Kawahara, Ghassan Hamarneh
2017	J	`jnl`	Geometry-Based Pectoral Muscle Segmentation From MLO Mammogram Views. IEEE Trans. Biomed. Eng. Saeid Asgari Taghanaki, Yonghuai Liu, Brandon Miles, Ghassan Hamarneh
2017	—	`conf`	Globally-Optimal Anatomical Tree Extraction from 3D Medical Images Using Pictorial Structures and Minimal Paths. MICCAI (2) Zahra Mirikharaji, Mengliu Zhao, Ghassan Hamarneh
2017	—	`conf`	Graph Geodesics to Find Progressively Similar Skin Lesion Images. GRAIL/MFCA/MICGen@MICCAI Jeremy Kawahara, Kathleen P. Moriarty, Ghassan Hamarneh
2017	—	`conf`	Leveraging Tree Statistics for Extracting Anatomical Trees from 3D Medical Images. CRV Mengliu Zhao, Brandon Miles, Ghassan Hamarneh
2017	J	`jnl`	Modelling and extraction of pulsatile radial distension and compression motion for automatic vessel segmentation from video. Medical Image Anal. Alborz Amir-Khalili, Ghassan Hamarneh, Rafeef Abugharbieh
2017	J	`jnl`	Pareto-optimal multi-objective dimensionality reduction deep auto-encoder for mammography classification. Comput. Methods Programs Biomed. Saeid Asgari Taghanaki, Jeremy Kawahara, Brandon Miles, Ghassan Hamarneh
2017	—	`conf`	Prediction of Brain Network Age and Factors of Delayed Maturation in Very Preterm Infants. MICCAI (1) Colin J. Brown, Kathleen P. Moriarty, Steven P. Miller, Brian G. Booth, Jill G. Zwicker, Ruth E. Grunau, Anne R. Synnes, Vann Chau, Ghassan Hamarneh
2017	—	`conf`	Segmentation-Free Kidney Localization and Volume Estimation Using Aggregated Orthogonal Decision CNNs. MICCAI (3) Mohammad Arafat Hussain, Alborz Amir-Khalili, Ghassan Hamarneh, Rafeef Abugharbieh
2017	—	`conf`	SwifTree: Interactive Extraction of 3D Trees Supporting Gaming and Crowdsourcing. CVII-STENT/LABELS@MICCAI Mian Huang, Ghassan Hamarneh
2017	—	`conf`	Uncertainty Driven Multi-loss Fully Convolutional Networks for Histopathology. CVII-STENT/LABELS@MICCAI Aïcha BenTaieb, Ghassan Hamarneh
2016	J	`jnl`	Adaptable Precomputation for Random Walker Image Segmentation and Registration. CoRR Shawn Andrews, Ghassan Hamarneh
2016	—	`conf`	Deep features to classify skin lesions. ISBI Jeremy Kawahara, Aïcha BenTaieb, Ghassan Hamarneh
2016	J	`jnl`	Endoscopic scene labelling and augmentation using intraoperative pulsatile motion and colour appearance cues with preoperative anatomical priors. Int. J. Comput. Assist. Radiol. Surg. Masoud S. Nosrati, Alborz Amir-Khalili, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh, Ghassan Hamarneh
2016	—	`conf`	Enhancing accuracy of symmetric random walker image registration via a novel data-consistency measure. ISBI Lisa Y. W. Tang, Roger C. Tam, Ghassan Hamarneh
2016	J	`jnl`	Incorporating prior knowledge in medical image segmentation: a survey. CoRR Masoud S. Nosrati, Ghassan Hamarneh
2016	J	`jnl`	Machine Learning on Human Connectome Data from MRI. CoRR Colin J. Brown, Ghassan Hamarneh
2016	—	`conf`	Multi-loss convolutional networks for gland analysis in microscopy. ISBI Aïcha BenTaieb, Jeremy Kawahara, Ghassan Hamarneh
2016	—	`conf`	Multi-resolution-Tract CNN with Hybrid Pretrained and Skin-Lesion Trained Layers. MLMI@MICCAI Jeremy Kawahara, Ghassan Hamarneh
2016	—	`conf`	Predictive Subnetwork Extraction with Structural Priors for Infant Connectomes. MICCAI (1) Colin J. Brown, Steven P. Miller, Brian G. Booth, Jill G. Zwicker, Ruth E. Grunau, Anne R. Synnes, Vann Chau, Ghassan Hamarneh
2016	J	`jnl`	STEAM - Statistical Template Estimation for Abnormality Mapping: A personalized DTI analysis technique with applications to the screening of preterm infants. NeuroImage Brian G. Booth, Steven P. Miller, Colin J. Brown, Kenneth J. Poskitt, Vann Chau, Ruth E. Grunau, Anne R. Synnes, Ghassan Hamarneh
2016	—	`conf`	Segmentation-Free Estimation of Kidney Volumes in CT with Dual Regression Forests. MLMI@MICCAI Mohammad Arafat Hussain, Ghassan Hamarneh, Timothy W. O'Connell, Mohammed F. Mohammed, Rafeef Abugharbieh
2016	J	`jnl`	Simultaneous Multi-Structure Segmentation and 3D Nonrigid Pose Estimation in Image-Guided Robotic Surgery. IEEE Trans. Medical Imaging Masoud S. Nosrati, Rafeef Abugharbieh, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Ghassan Hamarneh
2016	J	`jnl`	Skin lesion tracking using structured graphical models. Medical Image Anal. Hengameh Mirzaalian, Tim K. Lee, Ghassan Hamarneh
2016	—	`conf`	Sub-Cellular Network Analysis of Ryanodine Receptor Positioning in Control and Phosphorylated States. CinC Ismail M. Khater, David R. L. Scriven, Edwin D. W. Moore, Ghassan Hamarneh
2016	—	`conf`	Topology Aware Fully Convolutional Networks for Histology Gland Segmentation. MICCAI (2) Aïcha BenTaieb, Ghassan Hamarneh
2016	—	`conf`	Tumor Lesion Segmentation from 3D PET Using a Machine Learning Driven Active Surface. MLMI@MICCAI Payam Ahmadvand, Nóirín Duggan, François Bénard, Ghassan Hamarneh
2015	—	`conf`	Automatic Diagnosis of Ovarian Carcinomas via Sparse Multiresolution Tissue Representation. MICCAI (1) Aïcha BenTaieb, Hector Li-Chang, David G. Huntsman, Ghassan Hamarneh
2015	—	`conf`	Automatic Vessel Segmentation from Pulsatile Radial Distension. MICCAI (3) Alborz Amir-Khalili, Ghassan Hamarneh, Rafeef Abugharbieh
2015	J	`jnl`	Automatic segmentation of occluded vasculature via pulsatile motion analysis in endoscopic robot-assisted partial nephrectomy video. Medical Image Anal. Alborz Amir-Khalili, Ghassan Hamarneh, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh
2015	—	`conf`	Corpus Callosum Segmentation in MS Studies Using Normal Atlases and Optimal Hybridization of Extrinsic and Intrinsic Image Cues. MICCAI (3) Lisa Y. W. Tang, Ghassan Hamarneh, Anthony Traboulsee, David K. B. Li, Roger C. Tam
2015	J	`jnl`	Evaluation and Comparison of Anatomical Landmark Detection Methods for Cephalometric X-Ray Images: A Grand Challenge. IEEE Trans. Medical Imaging Ching-Wei Wang, Cheng-Ta Huang, Meng-Che Hsieh, Chung-Hsing Li, Sheng-Wei Chang, Wei-Cheng Li, Remy Vandaele, Raphaël Marée, Sébastien Jodogne, Pierre Geurts, Cheng Chen, Guoyan Zheng, Chengwen Chu, Hengameh Mirzaalian, Ghassan Hamarneh, Tomaz Vrtovec, Bulat Ibragimov
2015	—	`conf`	Examining visible articulatory features in clear and conversational speech. ICPhS Lisa Tang, Beverly Hannah, Allard Jongman, Joan A. Sereno, Yue Wang, Ghassan Hamarneh
2015	J	`jnl`	Examining visible articulatory features in clear and plain speech. Speech Commun. Lisa Y. W. Tang, Beverly Hannah, Allard Jongman, Joan A. Sereno, Yue Wang, Ghassan Hamarneh
2015	J	`jnl`	Multi-Region Probabilistic Dice Similarity Coefficient using the Aitchison Distance and Bipartite Graph Matching. CoRR Shawn Andrews, Ghassan Hamarneh
2015	—	`conf`	Prediction of Motor Function in Very Preterm Infants Using Connectome Features and Local Synthetic Instances. MICCAI (1) Colin J. Brown, Steven P. Miller, Brian G. Booth, Kenneth J. Poskitt, Vann Chau, Anne R. Synnes, Jill G. Zwicker, Ruth E. Grunau, Ghassan Hamarneh
2015	—	`conf`	Random walker image registration with inverse consistency. ISBI Lisa Y. W. Tang, Shawn Andrews, Ghassan Hamarneh
2015	—	`conf`	Segmentation of overlapping cervical cells: A variational method with star-shape prior. ISBI Masoud S. Nosrati, Ghassan Hamarneh
2015	—	`conf`	Skin lesion matching using Jacobian based descriptors for topology preservation. ISBI Hengameh Mirzaalian, Tim K. Lee, Ghassan Hamarneh
2015	J	`jnl`	The Generalized Log-Ratio Transformation: Learning Shape and Adjacency Priors for Simultaneous Thigh Muscle Segmentation. IEEE Trans. Medical Imaging Shawn Andrews, Ghassan Hamarneh
2014	J	`jnl`	Arterial Mechanical Motion Estimation Based on a Semi-Rigid Body Deformation Approach. Sensors Pablo Guzmán, Ghassan Hamarneh, Rafael Ros, Eduardo Ros
2014	—	`conf`	Auto Localization and Segmentation of Occluded Vessels in Robot-Assisted Partial Nephrectomy. MICCAI (1) Alborz Amir-Khalili, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Ghassan Hamarneh, Rafeef Abugharbieh
2014	—	`conf`	Automatic Labelling of Tumourous Frames in Free-Hand Laparoscopic Ultrasound Video. MICCAI (2) Jeremy Kawahara, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh, Ghassan Hamarneh
2014	—	`conf`	Bifurcation detection in 3D vascular images using novel features and random forest. ISBI Mengliu Zhao, Ghassan Hamarneh
2014	—	`conf`	Biomechanical kidney model for predicting tumor displacement in the presence of external pressure load. ISBI Ivan Figueroa-Garcia, Jean-Marc Peyrat, Ghassan Hamarneh, Rafeef Abugharbieh
2014	—	`conf`	DTI-DeformIt: Generating ground-truth validation data for diffusion tensor image analysis tasks. ISBI Brian G. Booth, Ghassan Hamarneh
2014	—	`conf`	Efficient Multi-organ Segmentation in Multi-view Endoscopic Videos Using Pre-operative Priors. MICCAI (2) Masoud S. Nosrati, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh, Ghassan Hamarneh
2014	—	`conf`	Fast random walker image registration using precomputation. ISBI Shawn Andrews, Lisa Tang, Ghassan Hamarneh
2014	J	`jnl`	Hair Enhancement in Dermoscopic Images Using Dual-Channel Quaternion Tubularness Filters and MRF-Based Multilabel Optimization. IEEE Trans. Image Process. Hengameh Mirzaalian, Tim K. Lee, Ghassan Hamarneh
2014	J	`jnl`	Local Optimization Based Segmentation of Spatially-Recurring, Multi-Region Objects With Part Configuration Constraints. IEEE Trans. Medical Imaging Masoud S. Nosrati, Ghassan Hamarneh
2014	—	`conf`	Random walker image registration with cost aggregation. ISBI Lisa Ying Wai Tang, Ghassan Hamarneh
2014	J	`jnl`	Spatial Normalization of Human Back Images for Dermatological Studies. IEEE J. Biomed. Health Informatics Hengameh Mirzaalian, Tim K. Lee, Ghassan Hamarneh
2014	J	`jnl`	Structural network analysis of brain development in young preterm neonates. NeuroImage Colin J. Brown, Steven P. Miller, Brian G. Booth, Shawn Andrews, Vann Chau, Kenneth J. Poskitt, Ghassan Hamarneh
2014	J	`jnl`	The Isometric Log-Ratio Transform for Probabilistic Multi-Label Anatomical Shape Representation. IEEE Trans. Medical Imaging Shawn Andrews, Neda Changizi, Ghassan Hamarneh
2014	—	`conf`	Topology Preservation and Anatomical Feasibility in Random Walker Image Registration. MICCAI (1) Shawn Andrews, Lisa Tang, Ghassan Hamarneh
2013	—	`conf`	3D Surface Reconstruction of Organs Using Patient-Specific Shape Priors in Robot-Assisted Laparoscopic Surgery. Abdominal Imaging Alborz Amir-Khalili, Jean-Marc Peyrat, Ghassan Hamarneh, Rafeef Abugharbieh
2013	—	`conf`	A Cross-Sectional Piecewise Constant Model for Segmenting Highly Curved Fiber Tracts in Diffusion MR Images. MICCAI (3) Brian G. Booth, Ghassan Hamarneh
2013	—	`conf`	Augmenting Auto-context with Global Geometric Features for Spinal Cord Segmentation. MLMI Jeremy Kawahara, Chris McIntosh, Roger C. Tam, Ghassan Hamarneh
2013	J	`jnl`	Bilateral Maps for Partial Matching. Comput. Graph. Forum Oliver van Kaick, Hao Zhang, Ghassan Hamarneh
2013	A*	`conf`	Bounded Labeling Function for Global Segmentation of Multi-part Objects with Geometric Constraints. ICCV Masoud S. Nosrati, Shawn Andrews, Ghassan Hamarneh
2013	—	`conf`	Decision Forests with Spatio-Temporal Features for Graph-Based Tumor Segmentation in 4D Lung CT. MLMI Hamidreza Mirzaei, Lisa Tang, René Werner, Ghassan Hamarneh
2013	—	`conf`	Globally optimal spinal cord segmentation using a minimal path in high dimensions. ISBI Jeremy Kawahara, Chris McIntosh, Roger C. Tam, Ghassan Hamarneh
2013	—	`conf`	Improving Probabilistic Image Registration via Reinforcement Learning and Uncertainty Evaluation. MLMI Tayebeh Lotfi, Lisa Tang, Shawn Andrews, Ghassan Hamarneh
2013	—	`conf`	K-confidence: Assessing uncertainty in tractography using K optimal paths. ISBI Colin J. Brown, Brian G. Booth, Ghassan Hamarneh
2013	—	`conf`	Random Walks with Efficient Search and Contextually Adapted Image Similarity for Deformable Registration. MICCAI (2) Lisa Y. W. Tang, Ghassan Hamarneh
2013	—	`conf`	Segmentation of Cells with Partial Occlusion and Part Configuration Constraint Using Evolutionary Computation. MICCAI (1) Masoud S. Nosrati, Ghassan Hamarneh
2013	—	`conf`	Uncertainty in Tractography via Tract Confidence Regions. CDMRI/MMBC@MICCAI Colin J. Brown, Brian G. Booth, Ghassan Hamarneh
2013	—	`conf`	Uncertainty-Encoded Augmented Reality for Robot-Assisted Partial Nephrectomy: A Phantom Study. AE-CAI Alborz Amir-Khalili, Masoud S. Nosrati, Jean-Marc Peyrat, Ghassan Hamarneh, Rafeef Abugharbieh
2012	—	`conf`	Diffusion tensor image processing using biquaternions. ISBI K. Krishna Nand, Ghassan Hamarneh, Rafeef Abugharbieh
2012	—	`conf`	Iterative segmentation and motion correction for dynamic PET images based on radioactive tracer kinetics. MMBIA Hengameh Mirzaalian, Ahmed Saad, Ghassan Hamarneh
2012	—	`conf`	Learning features for streak detection in dermoscopic color images using localized radial flux of principal intensity curvature. MMBIA Hengameh Mirzaalian, Tim K. Lee, Ghassan Hamarneh
2012	—	`conf`	Locally-adaptive similarity metric for deformable medical image registration. ISBI Lisa Tang, Alfred O. Hero III, Ghassan Hamarneh
2012	J	`jnl`	Mammography segmentation with maximum likelihood active contours. Medical Image Anal. Peyman Rahmati, Andy Adler, Ghassan Hamarneh
2012	J	`jnl`	Medial-Based Deformable Models in Nonconvex Shape-Spaces for Medical Image Segmentation. IEEE Trans. Medical Imaging Chris McIntosh, Ghassan Hamarneh
2012	J	`jnl`	Modeling Brain Activation in fMRI Using Group MRF. IEEE Trans. Medical Imaging Bernard Ng, Ghassan Hamarneh, Rafeef Abugharbieh
2012	—	`conf`	Multi-region competitive tractography via graph-based random walks. MMBIA Brian G. Booth, Ghassan Hamarneh
2012	—	`conf`	Spatial dispersion of lesions as a surrogate biomarker for disability in multiple sclerosis. MMBIA Fahime Sheikhzadeh, Roger C. Tam, Ghassan Hamarneh
2012	J	`jnl`	Tongue contour tracking in dynamic ultrasound via higher-order MRFs and efficient fusion moves. Medical Image Anal. Lisa Tang, Tim Bressmann, Ghassan Hamarneh
2012	—	`conf`	Uncertainty-Based Feature Learning for Skin Lesion Matching Using a High Order MRF Optimization Framework. MICCAI (2) Hengameh Mirzaalian, Tim K. Lee, Ghassan Hamarneh
2012	—	`conf`	Vascular bifurcation detection in scale-space. MMBIA Daniel-Marian Baboiu, Ghassan Hamarneh
2011	—	`conf`	A Machine Learning Approach to Tongue Motion Analysis in 2D Ultrasound Image Sequences. MLMI Lisa Tang, Ghassan Hamarneh, Tim Bressmann
2011	J	`jnl`	A Survey on Shape Correspondence. Comput. Graph. Forum Oliver van Kaick, Hao Zhang, Ghassan Hamarneh, Daniel Cohen-Or
2011	—	`conf`	Active Learning for Interactive 3D Image Segmentation. MICCAI (3) Andrew Top, Ghassan Hamarneh, Rafeef Abugharbieh
2011	—	`conf`	Consistent Information Content Estimation for Diffusion Tensor MR Images. HISB Brian G. Booth, Ghassan Hamarneh
2011	A*	`conf`	Convex multi-region probabilistic segmentation with shape prior in the isometric log-ratio transformation space. ICCV Shawn Andrews, Chris McIntosh, Ghassan Hamarneh
2011	—	`conf`	Detecting Structure in Diffusion Tensor MR Images. MICCAI (2) K. Krishna Nand, Rafeef Abugharbieh, Brian G. Booth, Ghassan Hamarneh
2011	—	`ch.`	Evolutionary Deformable Models for Medical Image Segmentation: A Genetic Algorithm Approach to Optimizing Learned, Intuitive, and Localized Medial-based Shape Deformation. Genetic and Evolutionary Computation: Medical Applications Chris McIntosh, Ghassan Hamarneh
2011	—	`conf`	Exact integration of diffusion orientation distribution functions for graph-based diffusion MRI analysis. ISBI Brian G. Booth, Ghassan Hamarneh
2011	J	`jnl`	Perception-Based Visualization of Manifold-Valued Medical Images Using Distance-Preserving Dimensionality Reduction. IEEE Trans. Medical Imaging Ghassan Hamarneh, Chris McIntosh, Mark S. Drew
2011	J	`jnl`	Prior Knowledge for Part Correspondence. Comput. Graph. Forum Oliver van Kaick, Andrea Tagliasacchi, Oana Sidi, Hao Zhang, Daniel Cohen-Or, Lior Wolf, Ghassan Hamarneh
2011	—	`conf`	Probabilistic Multi-shape Segmentation of Knee Extensor and Flexor Muscles. MICCAI (3) Shawn Andrews, Ghassan Hamarneh, Azadeh Yazdanpanah, Bahareh HajGhanbari, W. Darlene Reid
2011	J	`jnl`	Segmentation of Intra-Retinal Layers From Optical Coherence Tomography Images Using an Active Contour Approach. IEEE Trans. Medical Imaging Azadeh Yazdanpanah, Ghassan Hamarneh, Benjamin R. Smith, Marinko Sarunic
2011	—	`conf`	Spinal Cord Segmentation for Volume Estimation in Healthy and Multiple Sclerosis Subjects Using Crawlers and Minimal Paths. HISB Chris McIntosh, Ghassan Hamarneh, Matthew Toom, Roger C. Tam
2011	J	`jnl`	VASE: Volume-Aware Surface Evolution for Surface Reconstruction from Incomplete Point Clouds. Comput. Graph. Forum Andrea Tagliasacchi, Matt Olson, Hao Zhang, Ghassan Hamarneh, Daniel Cohen-Or
2010	C	`conf`	A New Preprocessing Filter for Digital Mammograms. ICISP Peyman Rahmati, Ghassan Hamarneh, Doron Nussbaum, Andy Adler
2010	—	`conf`	A Survey on Shape Correspondence. Eurographics (State of the Art Reports) Oliver van Kaick, Hao Zhang, Ghassan Hamarneh, Daniel Cohen-Or
2010	—	`conf`	Adaptive Regularization for Image Segmentation Using Local Image Curvature Cues. ECCV (4) Josna Rao, Rafeef Abugharbieh, Ghassan Hamarneh
2010	—	`conf`	Detecting Brain Activation in fMRI Using Group Random Walker. MICCAI (2) Bernard Ng, Ghassan Hamarneh, Rafeef Abugharbieh
2010	J	`jnl`	Dual-isotope Acquisition for CT-SPECT Registration of Infection Studies. J. Digit. Imaging Lisa Tang, Ghassan Hamarneh, Anna Celler
2010	J	`jnl`	Exploration and Visualization of Segmentation Uncertainty using Shape and Appearance Prior Information. IEEE Trans. Vis. Comput. Graph. Ahmed Saad, Ghassan Hamarneh, Torsten Möller
2010	—	`conf`	Extraction of the Plane of Minimal Cross-Sectional Area of the Corpus Callosum Using Template-Driven Segmentation. MICCAI (3) Neda Changizi, Ghassan Hamarneh, Omer Ishaq, Aaron D. Ward, Roger C. Tam
2010	—	`conf`	Fast Random Walker with Priors Using Precomputation for Interactive Medical Image Segmentation. MICCAI (3) Shawn Andrews, Ghassan Hamarneh, Ahmed Saad
2010	—	`conf`	Generalized Sparse Classifiers for Decoding Cognitive States in fMRI. MLMI Bernard Ng, Arash Vahdat, Ghassan Hamarneh, Rafeef Abugharbieh
2010	—	`conf`	Graph-based tracking of the tongue contour in ultrasound sequences with adaptive temporal regularization. CVPR Workshops Lisa Tang, Ghassan Hamarneh
2010	A*	`conf`	Group MRF for fMRI activation detection. CVPR Bernard Ng, Rafeef Abugharbieh, Ghassan Hamarneh
2010	J	`jnl`	ProbExplorer: Uncertainty-guided Exploration and Editing of Probabilistic Medical Image Segmentation. Comput. Graph. Forum Ahmed Saad, Torsten Möller, Ghassan Hamarneh
2010	—	`conf`	Probabilistic Multi-Shape Representation Using an Isometric Log-Ratio Mapping. MICCAI (3) Neda Changizi, Ghassan Hamarneh
2010	—	`conf`	Reliability-Driven, Spatially-Adaptive Regularization for Deformable Registration. WBIR Lisa Tang, Ghassan Hamarneh, Rafeef Abugharbieh
2010	—	`conf`	Spotlight: Automated Confidence-Based User Guidance for Increasing Efficiency in Interactive 3D Image Segmentation. MCV Andrew Top, Ghassan Hamarneh, Rafeef Abugharbieh
2010	J	`jnl`	The Groupwise Medial Axis Transform for Fuzzy Skeletonization and Pruning. IEEE Trans. Pattern Anal. Mach. Intell. Aaron D. Ward, Ghassan Hamarneh
2010	J	`jnl`	VascuSynth: Simulating vascular trees for generating volumetric image data with ground-truth segmentation and tree analysis. Comput. Medical Imaging Graph. Ghassan Hamarneh, Preet Jassi
2010	A*	`conf`	Vessel scale-selection using MRF optimization. CVPR Hengameh Mirzaalian, Ghassan Hamarneh
2009	A*	`conf`	A graph-based approach to skin mole matching incorporating template-normalized coordinates. CVPR Hengameh Mirzaalian, Ghassan Hamarneh, Tim K. Lee
2009	—	`conf`	Adaptive Contextual Energy Parameterization for Automated Image Segmentation. ISVC (1) Josna Rao, Ghassan Hamarneh, Rafeef Abugharbieh
2009	J	`jnl`	Automatic Spatially-Adaptive Balancing of Energy Terms for Image Segmentation CoRR Josna Rao, Ghassan Hamarneh, Rafeef Abugharbieh
2009	—	`conf`	Hands-free interactive image segmentation using eyegaze. Computer-Aided Diagnosis Mahya Sadeghi, Geoffrey Tien, Ghassan Hamarneh, M. Stella Atkins
2009	—	`conf`	Intra-retinal Layer Segmentation in Optical Coherence Tomography Using an Active Contour Approach. MICCAI (1) Azadeh Yazdanpanah, Ghassan Hamarneh, Benjamin Smith, Marinko Sarunic
2009	J	`jnl`	Multi-Label MRF Optimization via Least Squares s-t Cuts CoRR Ghassan Hamarneh
2009	—	`conf`	Multi-label MRF Optimization via a Least Squares ISVC (1) Ghassan Hamarneh
2009	—	`conf`	Optimal Weights for Convex Functionals in Medical Image Segmentation. ISVC (1) Chris McIntosh, Ghassan Hamarneh
2009	J	`jnl`	Watershed segmentation using prior shape and appearance knowledge. Image Vis. Comput. Ghassan Hamarneh, Xiaoxing Li
2009	J	`jnl`	n -SIFT: n -Dimensional Scale Invariant Feature Transform. IEEE Trans. Image Process. Warren Cheung, Ghassan Hamarneh
2008	J	`jnl`	3D Bicipital Groove Shape Analysis and Relationship to Tendopathy. J. Digit. Imaging Aaron D. Ward, Ghassan Hamarneh, Mark E. Schweitzer
2008	J	`jnl`	Development of NEMA-based Software for Gamma Camera Quality Control. J. Digit. Imaging Andrew Rova, Anna Celler, Ghassan Hamarneh
2008	J	`jnl`	Efficient interactive 3D Livewire segmentation of complex objects with arbitrary topology. Comput. Medical Imaging Graph. Miranda Poon, Ghassan Hamarneh, Rafeef Abugharbieh
2008	—	`conf`	Kinetic Modeling Based Probabilistic Segmentation for Molecular Images. MICCAI (1) Ahmed Saad, Ghassan Hamarneh, Torsten Möller, Benjamin Smith
2008	—	`conf`	Quaternion Color Curvature. CIC Lilong Shi, Brian V. Funt, Ghassan Hamarneh
2008	A*	`conf`	SMRFI: Shape matching via registration of vector-valued feature images. CVPR Lisa Tang, Ghassan Hamarneh
2008	—	`conf`	Simulation of Ground-Truth Validation Data Via Physically- and Statistically-Based Warps. MICCAI (1) Ghassan Hamarneh, Preet Jassi, Lisa Tang
2008	J	`jnl`	Validation of mutual information-based registration of CT and bone SPECT images in dual-isotope studies. Comput. Methods Programs Biomed. Lisa Tang, Ghassan Hamarneh, Anna Celler
2007	B	`conf`	3D surface parameterization using manifold learning for medial shape representation. Image Processing Aaron D. Ward, Ghassan Hamarneh
2007	J	`jnl`	Bilateral Filtering of Diffusion Tensor Magnetic Resonance Images. IEEE Trans. Image Process. Ghassan Hamarneh, Judith Hradsky
2007	Misc	`conf`	Contour Correspondence via Ant Colony Optimization. PG Oliver van Kaick, Ghassan Hamarneh, Hao Zhang, Paul Wighton
2007	B	`conf`	DT-MRI segmentation using graph cuts. Image Processing Yonas T. Weldeselassie, Ghassan Hamarneh
2007	—	`conf`	Is a Single Energy Functional Sufficient? Adaptive Energy Functionals and Automatic Initialization. MICCAI (2) Chris McIntosh, Ghassan Hamarneh
2007	—	`conf`	Live-Vessel: Extending Livewire for Simultaneous Extraction of Optimal Medial and Boundary Paths in Vascular Images. MICCAI (2) Kelvin Poon, Ghassan Hamarneh, Rafeef Abugharbieh
2007	—	`conf`	N-Sift: N-Dimensional Scale Invariant Feature Transform for Matching Medical Images. ISBI Warren Cheung, Ghassan Hamarneh
2007	—	`conf`	Quantification and Visualization of Localized and Intuitive Shape Variability Using a Novel Medial-Based Shape Representation. ISBI Ghassan Hamarneh, Aaron D. Ward, Richard Frank
2007	B	`conf`	Segmentation of complex objects with non-spherical topologies from volumetric medical images using 3D livewire. Image Processing Kelvin Poon, Ghassan Hamarneh, Rafeef Abugharbieh
2007	—	`conf`	Simultaneous Segmentation, Kinetic Parameter Estimation, and Uncertainty Visualization of Dynamic PET Images. MICCAI (2) Ahmed Saad, Benjamin Smith, Ghassan Hamarneh, Torsten Möller
2007	—	`conf`	Statistical Shape Modeling Using MDL Incorporating Shape, Appearance, and Expert Knowledge. MICCAI (1) Aaron D. Ward, Ghassan Hamarneh
2007	—	`conf`	Tensor dissimilarity based adaptive seeding algorithm for DT-MRI visualization with streamtubes. Image-Guided Procedures Yonas T. Weldeselassie, Ghassan Hamarneh, Daniel Weiskopf
2007	B	`conf`	Visualization and exploration of time-varying medical image data sets. Graphics Interface Zhe Fang, Torsten Möller, Ghassan Hamarneh, Anna Celler
2007	—	`conf`	Visualizing Diffusion Tensor Dissimilarity using an ICA Based Perceptual Colour Metric. CIC Mark S. Drew, Ghassan Hamarneh
2006	B	`conf`	MATLAB-ITK interface for medical image filtering, segmentation, and registration. Image Processing Vincent Chu, Ghassan Hamarneh
2006	—	`conf`	Spinal Crawlers: Deformable Organisms for Spinal Cord Segmentation and Analysis. MICCAI (1) Chris McIntosh, Ghassan Hamarneh
2006	—	`conf`	Vessel Crawlers: 3D Physically-based Deformable Organisms for Vasculature Segmentation and Analysis. CVPR (1) Chris McIntosh, Ghassan Hamarneh
2005	B	`conf`	3D live-wire-based semi-automatic segmentation of medical images. Image Processing Ghassan Hamarneh, Johnson Yang, Chris McIntosh, Morgan Langille
2005	B	`conf`	Color lesion boundary detection using live wire. Image Processing Artur Chodorowski, Ulf Mattsson, Morgan Langille, Ghassan Hamarneh
2005	—	`conf`	Modeling Prior Shape and Appearance Knowledge in Watershed Segmentat. CRV Xiaoxing Li, Ghassan Hamarneh
2005	B	`conf`	Physics-based deformable organisms for medical image analysis. Image Processing Ghassan Hamarneh, Chris McIntosh
2004	J	`jnl`	Deformable spatio-temporal shape models: extending active shape models to 2D+time. Image Vis. Comput. Ghassan Hamarneh, Tomas Gustavsson
2004	J	`jnl`	Medial Profiles for Modeling Deformation and Statistical Analysis of Shape and their Use in Medical Image Segmentation. Int. J. Shape Model. Ghassan Hamarneh, Rafeef Abugharbieh, Tim McInerney
2003	—	`conf`	Anatomically Guided Registration of Whole Body Mouse MR Images. MICCAI (2) Natasa Kovacevic, Ghassan Hamarneh, R. Mark Henkelman
2003	J	`jnl`	Level Set Curve Matching and Particle Image Velocimetry for Resolving Chemistry and Turbulence Interactions in Propagating Flames. J. Math. Imaging Vis. Rafeef Abugharbieh, Ghassan Hamarneh, Tomas Gustavsson, Clemens Kaminski
2003	—	`conf`	Physics-based shape deformations for medical image analysis. Image Processing: Algorithms and Systems Ghassan Hamarneh, Tim McInerney
2003	—	`conf`	Segmentation, Registration, and Deformation Analysis of 3D MR Images of Mice. MICCAI (2) Ghassan Hamarneh, X. Josette Chen, Brian Neiman, Jeff Henderson, R. Mark Henkelman
2002	J	`jnl`	Deformable organisms for automatic medical image analysis. Medical Image Anal. Tim McInerney, Ghassan Hamarneh, Martha Elizabeth Shenton, Demetri Terzopoulos
2001	A	`conf`	Deformable Organisms for Automatic Medical Image Analysis. MICCAI Ghassan Hamarneh, Tim McInerney, Demetri Terzopoulos
2001	A	`conf`	Deformable Spatio-Temporal Shape Models: Extending ASM to 2D+Time. BMVC Ghassan Hamarneh, Tomas Gustavsson
2001	—	`—`	Towards Intelligent Deformable Models for Medical Image Analysis. Ghassan Hamarneh
2000	B	`conf`	Active contour models: application to oral lesion detection in color images. SMC Ghassan Hamarneh, Artur Chodorowski, Tomas Gustavsson
2000	B	`conf`	Statistically constrained snake deformations. SMC Ghassan Hamarneh, Tomas Gustavsson