George M. Church

45 papers A* 1A 1B 3Misc 2Journal 31Unranked 7

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Cryptographic open science: enabling secure and incentivized biomedical data sharing with web 3.0 technologies to overcome the open science dilemma. Frontiers Blockchain Yu Wang, Junfeng Fan, Zhiwei Bao, Sheng Zhang, Liang Liu, Mengsu Yang, George M. Church
2025	J	`jnl`	Graph AI generates neurological hypotheses validated in molecular, organoid, and clinical systems. CoRR Ayush Noori, Joaquín Polonuer, Katharina Meyer, Bogdan Budnik, Shad Morton, Xinyuan Wang, Sumaiya Nazeen, Yingnan He, Iñaki Arango, Lucas Vittor, Matthew Woodworth, Richard C. Krolewski, Michelle M. Li, Ninning Liu, Tushar Kamath, Evan Macosko, Dylan Ritter, Jalwa Afroz, Alexander B. H. Henderson, Lorenz Studer, Samuel G. Rodriques, Andrew White, Noa Dagan, David A. Clifton, George M. Church, Sudeshna Das, Jenny M. Tam, Vikram Khurana, Marinka Zitnik
2022	J	`jnl`	Towards practical and robust DNA-based data archiving using the yin-yang codec system. Nat. Comput. Sci. Zhi Ping, Shihong Chen, Guangyu Zhou, Xiaoluo Huang, Sha Joe Zhu, Haoling Zhang, Henry H. Lee, Zhaojun Lan, Jie Cui, Tai Chen, Wenwei Zhang, Huanming Yang, Xun Xu, George M. Church, Yue Shen
2021	J	`jnl`	Citizen-centered, auditable and privacy-preserving population genomics. Nat. Comput. Sci. Dennis Grishin, Jean Louis Raisaro, Juan Ramón Troncoso-Pastoriza, Kamal Obbad, Kevin Quinn, Mickaël Misbach, Jared Gollhardt, João Sá Sousa, Jacques Fellay, George M. Church, Jean-Pierre Hubaux
2021	J	`jnl`	TBDB: a database of structurally annotated T-box riboswitch: tRNA pairs. Nucleic Acids Res. Jorge A. Marchand, Merrick D. Pierson smela, Thomas H. H. Jordan, Kamesh Narasimhan, George M. Church
2020	J	`jnl`	A haplotype-aware de novo assembly of related individuals using pedigree sequence graph. Bioinform. Shilpa Garg, John Aach, Heng Li, Isaac Sebenius, Richard Durbin, George M. Church
2018	—	`conf`	Single-Molecule Characterization of a Nanopore-Coupled Cas9 Protein on an Electrode Array. IEEE SENSORS Mirkó Palla, David B. Thompson, George M. Church
2017	J	`jnl`	Nucleotide-time alignment for molecular recorders. PLoS Comput. Biol. Thaddeus Cybulski, Edward S. Boyden, George M. Church, Keith E. J. Tyo, Konrad P. Körding
2017	J	`jnl`	Variational auto-encoding of protein sequences. CoRR Sam Sinai, Eric D. Kelsic, George M. Church, Martin A. Nowak
2016	Misc	`conf`	Forward Error Correction for DNA Data Storage. ICCS Meinolf Blawat, Klaus Gaedke, Ingo Huetter, Xiao-Ming Chen, Brian Turczyk, Samuel A. Inverso, Benjamin Pruitt, George M. Church
2015	J	`jnl`	Biocontainment of genetically modified organisms by synthetic protein design. Nat. Daniel J. Mandell, Marc J. Lajoie, Michael T. Mee, Ryo Takeuchi, Gleb Kuznetsov, Julie E. Norville, Christopher J. Gregg, Barry L. Stoddard, George M. Church
2015	J	`jnl`	Corrigendum: Biocontainment of genetically modified organisms by synthetic protein design. Nat. Daniel J. Mandell, Marc J. Lajoie, Michael T. Mee, Ryo Takeuchi, Gleb Kuznetsov, Julie E. Norville, Christopher J. Gregg, Barry L. Stoddard, George M. Church
2015	J	`jnl`	Puzzle Imaging: Using Large-scale Dimensionality Reduction Algorithms for Localization. CoRR Joshua I. Glaser, Bradley M. Zamft, George M. Church, Konrad P. Körding
2014	J	`jnl`	CHOPCHOP: a CRISPR/Cas9 and TALEN web tool for genome editing. Nucleic Acids Res. Tessa G. Montague, José M. Cruz, James A. Gagnon, George M. Church, Eivind Valen
2014	J	`jnl`	Genome editing assessment using CRISPR Genome Analyzer (CRISPR-GA). Bioinform. Marc Güell, Luhan Yang, George M. Church
2014	J	`jnl`	Spatial information in large-scale neural recordings. Frontiers Comput. Neurosci. Thaddeus Cybulski, Joshua I. Glaser, Adam Henry Marblestone, Bradley M. Zamft, Edward S. Boyden III, George M. Church, Konrad P. Körding
2014	J	`jnl`	The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations. Bioinform. Michael Keane, Thomas Craig, Jessica Alföldi, Aaron M. Berlin, Jeremy Johnson, Andrei Seluanov, Vera Gorbunova, Federica Di Palma, Kerstin Lindblad-Toh, George M. Church, João Pedro de Magalhães
2013	J	`jnl`	Physical principles for scalable neural recording. Frontiers Comput. Neurosci. Adam H. Marblestone, Bradley M. Zamft, Yael Maguire, Mikhail G. Shapiro, Thaddeus Cybulski, Joshua I. Glaser, Dario Amodei, P. Benjamin Stranges, Reza Kalhor, David Dalrymple, Dongjin Seo, Elad Alon, Michel M. Maharbiz, Jose M. Carmena, Jan M. Rabaey, Edward S. Boyden III, George M. Church, Konrad P. Körding
2013	J	`jnl`	Redirector: Designing Cell Factories by Reconstructing the Metabolic Objective. PLoS Comput. Biol. Graham Rockwell, Nicholas J. Guido, George M. Church
2013	J	`jnl`	Statistical Analysis of Molecular Signal Recording. PLoS Comput. Biol. Joshua I. Glaser, Bradley M. Zamft, Adam H. Marblestone, Jeffrey R. Moffitt, Keith E. J. Tyo, Edward S. Boyden III, George M. Church, Konrad P. Körding
2009	—	`conf`	Design and self-assembly of DNA into nanoscale 3D shapes. SIGGRAPH Talks Shawn M. Douglas, Hendrik Dietz, Tim Liedl, Björn Högberg, Franziska Graf, Adam H. Marblestone, Surat Teerapittayanon, Alejandro Vazquez, George M. Church, William M. Shih
2009	J	`jnl`	Meta-analysis of age-related gene expression profiles identifies common signatures of aging. Bioinform. João Pedro de Magalhães, João Curado, George M. Church
2008	—	`conf`	Free Factories: Unified Infrastructure for Data Intensive Web Services. USENIX ATC Alexander Wait Zaranek, Tom Clegg, Ward Vandewege, George M. Church
2006	J	`jnl`	Identifying metabolic enzymes with multiple types of association evidence. BMC Bioinform. Peter V. Kharchenko, Lifeng Chen, Yoav Freund, Dennis Vitkup, George M. Church
2005	J	`jnl`	Improving molecular cancer class discovery through sparse non-negative matrix factorization. Bioinform. Yuan Gao, George M. Church
2004	—	`conf`	Estimating and Improving Protein Interaction Error Rates. CSB Patrik D'haeseleer, George M. Church
2004	—	`conf`	Filling gaps in a metabolic network using expression information. ISMB/ECCB (Supplement of Bioinformatics) Peter V. Kharchenko, Dennis Vitkup, George M. Church
2004	J	`jnl`	Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura. Bioinform. Yonatan H. Grad, Frederick P. Roth, Marc S. Halfon, George M. Church
2004	J	`jnl`	Preferred in vivo ubiquitination sites. Bioinform. André Catic, Cal T. Collins, George M. Church, Hidde L. Ploegh
2004	J	`jnl`	yMGV: a cross-species expression data mining tool. Nucleic Acids Res. Gaëlle Lelandais, Stéphane Le Crom, Frédéric Devaux, Stéphane Vialette, George M. Church, Claude Jacq, Philippe Marc
2003	—	`conf`	Predicting phenotype from patterns of annotation. ISMB (Supplement of Bioinformatics) Oliver D. King, Jeffrey C. Lee, Aimée M. Dudley, Daniel M. Janse, George M. Church, Frederick P. Roth
2002	J	`jnl`	Automated modelling of signal transduction networks. BMC Bioinform. Martin Steffen, Allegra Petti, John Aach, Patrik D'haeseleer, George M. Church
2002	—	`conf`	Discovery of DNA Regulatory Motifs. Gene Regulations and Metabolism Abigail Manson McGuire, George M. Church
2001	J	`jnl`	A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem Mass Spectrometry CoRR Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M. Church
2001	J	`jnl`	A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem Mass Spectrometry. J. Comput. Biol. Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M. Church
2001	J	`jnl`	Algorithms for Identifying Protein Cross-Links via Tandem Mass Spectrometry. J. Comput. Biol. Ting Chen, Jacob D. Jaffe, George M. Church
2001	B	`conf`	Algorithms for identifying protein cross-links via tandem mass spectrometry. RECOMB Ting Chen, Jacob D. Jaffe, George M. Church
2001	J	`jnl`	Aligning gene expression time series with time warping algorithms. Bioinform. John Aach, George M. Church
2001	J	`jnl`	Dynamic simulation of the human red blood cell metabolic network. Bioinform. Neema Jamshidi, Jeremy S. Edwards, Tom Fahland, George M. Church, Bernhard O. Palsson
2001	B	`conf`	Hunger for new technologies, metrics, and spatiotemporal models in functional genomic (abstract only). RECOMB George M. Church
2000	A*	`conf`	A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry. SODA Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M. Church
2000	A	`conf`	Biclustering of Expression Data. ISMB Yizong Cheng, George M. Church
2000	J	`jnl`	Fast assignment of protein structures to sequences using the Intermediate Sequence Library PDB-ISL. Bioinform. Sarah A. Teichmann, Cyrus Chothia, George M. Church, Jong-Chan Park
2000	B	`conf`	PDB_ISL: an intermediate sequence library for protein structure assignment. RECOMB Sarah A. Teichmann, Cyrus Chothia, George M. Church, Jong-Chan Park
1999	Misc	`conf`	Modeling Gene Expression with Differential Equations. Pacific Symposium on Biocomputing Ting Chen, Hongyu L. He, George M. Church