Geoffrey J. Barton

47 papers Journal 46Unranked 1

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Comparative evaluation of methods for the prediction of protein-ligand binding sites. J. Cheminformatics Javier S. Utgés, Geoffrey J. Barton
2022	J	`jnl`	Missense variants in human ACE2 strongly affect binding to SARS-CoV-2 Spike providing a mechanism for ACE2 mediated genetic risk in Covid-19: A case study in affinity predictions of interface variants. PLoS Comput. Biol. Stuart A. MacGowan, Michael I. Barton, Mikhail Kutuzov, Omer Dushek, P. Anton van der Merwe, Geoffrey J. Barton
2022	J	`jnl`	PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
2021	J	`jnl`	Ankyrin repeats in context with human population variation. PLoS Comput. Biol. Javier S. Utgés, Maxim I. Tsenkov, Noah J. M. Dietrich, Stuart A. MacGowan, Geoffrey J. Barton
2020	J	`jnl`	PDBe-KB: a community-driven resource for structural and functional annotations. Nucleic Acids Res. Mihaly Varadi, John M. Berrisford, Mandar S. Deshpande, Sreenath Nair, Aleksandras Gutmanas, David R. Armstrong, Lukás Pravda, Bissan Al-Lazikani, Stephen Anyango, Geoffrey J. Barton, Karel Berka, Tom L. Blundell, Neera Borkakoti, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Fábio Madeira, M. S. Madhusudhan, Henry J. Martell, Stuart A. MacGowan, Jake E. McGreig, Saqib Mir, Abhik Mukhopadhyay, Luca Parca, Typhaine Paysan-Lafosse, Leandro G. Radusky, António J. M. Ribeiro, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda, Radka Svobodová Vareková, Jonathan D. Tyzack, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
2019	J	`jnl`	Detection and mitigation of spurious antisense expression with RoSA. F1000Research Kira Mourão, Nicholas J. Schurch, Radek Lucoszek, Kimon Froussios, Katarzyna Mackinnon, Céline Duc, Gordon G. Simpson, Geoffrey J. Barton
2019	J	`jnl`	How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in Arabidopsis thaliana. Bioinform. Kimon Froussios, Nick J. Schurch, Katarzyna Mackinnon, Marek Gierlinski, Céline Duc, Gordon G. Simpson, Geoffrey J. Barton
2019	J	`jnl`	Relative Abundance of Transcripts ( F1000Research Kimon Froussios, Kira Mourão, Gordon G. Simpson, Geoffrey J. Barton, Nicholas J. Schurch
2018	J	`jnl`	JABAWS 2.2 distributed web services for Bioinformatics: protein disorder, conservation and RNA secondary structure. Bioinform. Peter V. Troshin, James B. Procter, Alexander Sherstnev, Daniel L. Barton, Fábio Madeira, Geoffrey J. Barton
2016	J	`jnl`	AlmostSignificant: simplifying quality control of high-throughput sequencing data. Bioinform. Joseph Ward, Christian Cole, Melanie Febrer, Geoffrey J. Barton
2015	J	`jnl`	14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides. Bioinform. Fábio Madeira, Michele Tinti, Gavuthami Murugesan, Emily Berrett, Margaret Stafford, Rachel Toth, Christian Cole, Carol MacKintosh, Geoffrey J. Barton
2015	J	`jnl`	JPred4: a protein secondary structure prediction server. Nucleic Acids Res. Alexey Drozdetskiy, Christian Cole, James B. Procter, Geoffrey J. Barton
2015	J	`jnl`	Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment. Bioinform. Marek Gierlinski, Christian Cole, Pietà Schofield, Nicholas J. Schurch, Alexander Sherstnev, Vijender Singh, Nicola Wrobel, Karim Gharbi, Gordon G. Simpson, Tom Owen-Hughes, Mark L. Blaxter, Geoffrey J. Barton
2011	J	`jnl`	Global network analysis of drug tolerance, mode of action and virulence in methicillin-resistant S. aureus. BMC Syst. Biol. Ian M. Overton, Shirley Graham, Katherine A. Gould, Jason Hinds, Catherine H. Botting, Sally Shirran, Geoffrey J. Barton, Peter J. Coote
2011	J	`jnl`	Java bioinformatics analysis web services for multiple sequence alignment - JABAWS: MSA. Bioinform. Peter V. Troshin, James B. Procter, Geoffrey J. Barton
2011	J	`jnl`	NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins. BMC Bioinform. Michelle S. Scott, Peter V. Troshin, Geoffrey J. Barton
2010	J	`jnl`	Human protein-protein interaction prediction. BMC Bioinform. Mark D. McDowall, Michelle S. Scott, Geoffrey J. Barton
2009	J	`jnl`	Human miRNA Precursors with Box H/ACA snoRNA Features. PLoS Comput. Biol. Michelle S. Scott, Fabio Avolio, Motoharu Ono, Angus I. Lamond, Geoffrey J. Barton
2009	J	`jnl`	Jalview Version 2 - a multiple sequence alignment editor and analysis workbench. Bioinform. Andrew M. Waterhouse, James B. Procter, David M. A. Martin, Michele E. Clamp, Geoffrey J. Barton
2009	J	`jnl`	Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinases. Nucleic Acids Res. David M. A. Martin, Diego Miranda-Saavedra, Geoffrey J. Barton
2009	J	`jnl`	PIPs: human protein-protein interaction prediction database. Nucleic Acids Res. Mark D. McDowall, Michelle S. Scott, Geoffrey J. Barton
2008	J	`jnl`	ParCrys: a Parzen window density estimation approach to protein crystallization propensity prediction. Bioinform. Ian M. Overton, Gianandrea Padovani, Mark A. Girolami, Geoffrey J. Barton
2008	J	`jnl`	SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser. Nucleic Acids Res. Thomas P. Walsh, Caleb Webber, Stephen M. J. Searle, Shane S. Sturrock, Geoffrey J. Barton
2008	J	`jnl`	TarO: a target optimisation system for structural biology. Nucleic Acids Res. Ian M. Overton, C. A. Johannes van Niekerk, Lester G. Carter, Alice Dawson, David M. A. Martin, Scott Cameron, Stephen A. McMahon, Malcolm F. White, William N. Hunter, James H. Naismith, Geoffrey J. Barton
2008	J	`jnl`	The Jpred 3 secondary structure prediction server. Nucleic Acids Res. Christian Cole, Jonathan D. Barber, Geoffrey J. Barton
2008	J	`jnl`	The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction. BMC Bioinform. Jonathan R. Manning, Emily R. Jefferson, Geoffrey J. Barton
2007	J	`jnl`	Prediction and ranking of human protein-protein interactions within a Bayesian framework. BMC Syst. Biol. Michelle S. Scott, Geoffrey J. Barton
2007	J	`jnl`	Probabilistic prediction and ranking of human protein-protein interactions. BMC Bioinform. Michelle S. Scott, Geoffrey J. Barton
2007	J	`jnl`	SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein-Protein Interactions. Nucleic Acids Res. Emily R. Jefferson, Thomas P. Walsh, Timothy J. Roberts, Geoffrey J. Barton
2007	J	`jnl`	The relationship between domain-domain interaction orientation and sequence similarity. BMC Syst. Biol. Emily R. Jefferson, Geoffrey J. Barton
2006	J	`jnl`	MACSIMS : multiple alignment of complete sequences information management system. BMC Bioinform. Julie Dawn Thompson, Arnaud Muller, Andrew M. Waterhouse, James B. Procter, Geoffrey J. Barton, Frédéric Plewniak, Olivier Poch
2006	J	`jnl`	Quantification of the variation in percentage identity for protein sequence alignments. BMC Bioinform. G. P. S. Raghava, Geoffrey J. Barton
2005	J	`jnl`	Jalview: Visualization and Analysis of Molecular Sequences, Alignments, and Structures. BMC Bioinform. Andrew M. Waterhouse, James B. Procter, David M. A. Martin, Geoffrey J. Barton
2004	J	`jnl`	E-MSD: an integrated data resource for bioinformatics. Nucleic Acids Res. Adel Golovin, Thomas J. Oldfield, John G. Tate, Samir S. Velankar, Geoffrey J. Barton, Harry Boutselakis, Dimitris Dimitropoulos, Joël Fillon, A. Hussain, John M. C. Ionides, Melford John, Peter A. Keller, Evgeny B. Krissinel, P. McNeil, Avi Naim, Richard H. Newman, Anne Pajon, Jorge Pineda, Abdel-Krim Rachedi, J. Copeland, Andrey Sitnov, Siamak Sobhany, Antonio Suarez-Uruena, G. J. Swaminathan, Mohammed Tagari, Swen Tromm, Wim F. Vranken, Kim Henrick
2004	J	`jnl`	GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes. BMC Bioinform. David M. A. Martin, Matthew Berriman, Geoffrey J. Barton
2004	J	`jnl`	The Jalview Java alignment editor. Bioinform. Michele E. Clamp, James A. Cuff, Stephen M. J. Searle, Geoffrey J. Barton
2003	J	`jnl`	Increased Coverage Obtained by Combination of Methods for Protein Sequence Database Searching. Bioinform. Caleb Webber, Geoffrey J. Barton
2003	J	`jnl`	OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy. BMC Bioinform. G. P. S. Raghava, Stephen M. J. Searle, Patrick C. Audley, Jonathan D. Barber, Geoffrey J. Barton
2003	J	`jnl`	Visual Representation of Database Search Results: The RHIMS Plot. Bioinform. David M. A. Martin, Pamela Hill, Geoffrey J. Barton, Andrew J. Flavell
2001	J	`jnl`	3Dee: a database of protein structural domains. Bioinform. Asim S. Siddiqui, Uwe Dengler, Geoffrey J. Barton
2001	J	`jnl`	Estimation of P-values for global alignments of protein sequences. Bioinform. Caleb Webber, Geoffrey J. Barton
2000	J	`jnl`	ProtEST: protein multiple sequence alignments from expressed sequence tags. Bioinform. James A. Cuff, Ewan Birney, Michele E. Clamp, Geoffrey J. Barton
1998	J	`jnl`	JPred: a consensus secondary structure prediction server. Bioinform. James A. Cuff, Michele E. Clamp, Asim S. Siddiqui, M. Finlay, Geoffrey J. Barton
1995	—	`conf`	Protein fold recognition from secondary structure assignments. HICSS (5) Robert B. Russell, R. R. Copley, Geoffrey J. Barton
1993	J	`jnl`	An efficient algorithm to locate all locally optimal alignments between two sequences allowing for gaps. Comput. Appl. Biosci. Geoffrey J. Barton
1993	J	`jnl`	Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation. Comput. Appl. Biosci. C. D. Livingstone, Geoffrey J. Barton
1991	J	`jnl`	Scanning protein sequence databanks using a distributed processing workstation network. Comput. Appl. Biosci. Geoffrey J. Barton