Gary Benson

55 papers A* 5A 1B 10C 4Journal 31Unranked 4
YearRankTypeTitle / Venue / Authors
2017 — conf
An SIMD Algorithm for Wraparound Tandem Alignment.
ISBRA
Joshua Loving, John P. Scaduto, Gary Benson
2016 J jnl
Editorial: Nucleic Acids Research annual Web Server Issue in 2016.
Nucleic Acids Res.
Gary Benson
2016 J jnl
LCSk: A refined similarity measure.
Theor. Comput. Sci.
Gary Benson, Avivit Levy, S. Maimoni, D. Noifeld, B. Riva Shalom
2016 J jnl
Special issue in honor of the 60th birthday of Amihood Amir.
Theor. Comput. Sci.
Gary Benson, Martin Farach-Colton, Moshe Lewenstein, Ely Porat
2015 J jnl
Editorial: Nucleic Acids Research annual Web Server Issue in 2015.
Nucleic Acids Res.
Gary Benson
2014 J jnl
BitPAl: a bit-parallel, general integer-scoring sequence alignment algorithm.
Bioinform.
Joshua Loving, Yözen Hernández, Gary Benson
2014 J jnl
Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data.
BMC Bioinform.
Allyson L. Byrd, Joseph F. Perez-Rogers, Solaiappan Manimaran, Eduardo Castro-Nallar, Ian Toma, Tim McCaffrey, Marc Siegel, Gary Benson, Keith A. Crandall, William Johnson
2014 J jnl
Editorial:
Nucleic Acids Res.
Gary Benson
2014 J jnl
Longest Common Subsequence in k-length substrings.
CoRR
Gary Benson, Avivit Levy, B. Riva Shalom
2013 B conf
A Bit-Parallel, General Integer-Scoring Sequence Alignment Algorithm.
CPM
Gary Benson, Yözen Hernández, Joshua Loving
2013 J jnl
Editorial.
Nucleic Acids Res.
Gary Benson
2013 B conf
Longest Common Subsequence in k Length Substrings.
SISAP
Gary Benson, Avivit Levy, B. Riva Shalom
2012 J jnl
Editorial.
Nucleic Acids Res.
Gary Benson
2012 J jnl
Mining poly-regions in DNA.
Int. J. Data Min. Bioinform.
Panagiotis Papapetrou, Gary Benson, George Kollios
2010 J jnl
Editorial.
Nucleic Acids Res.
Gary Benson
2009 J jnl
All hits all the time: parameter-free calculation of spaced seed sensitivity.
Bioinform.
Denise Y. F. Mak, Gary Benson
2009 — conf
Consensus RNA Secondary Structure Prediction by Ranking k-Length Stems.
BIOCOMP
Denise Y. F. Mak, Gary Benson
2009 J jnl
Pattern matching with address errors: Rearrangement distances.
J. Comput. Syst. Sci.
Amihood Amir, Yonatan Aumann, Gary Benson, Avivit Levy, Ohad Lipsky, Ely Porat, Steven Skiena, Uzi Vishne
2008 J jnl
Editorial.
Nucleic Acids Res.
Gary Benson
2008 C conf
Exact Distribution of a Spaced Seed Statistic for DNA Homology Detection.
SPIRE
Gary Benson, Denise Y. F. Mak
2007 J jnl
3'-UTR SIRF: A database for identifying clusters of short interspersed repeats in 3' untranslated regions.
BMC Bioinform.
Benjamin B. Andken, In Lim, Gary Benson, John J. Vincent, Matthew T. Ferenc, Bianca Heinrich, Larissa A. Jarzylo, Heng-Ye Man, James O. Deshler
2007 B conf
All Hits All The Time: Parameter Free Calculation of Seed Sensitivity.
APBC
Denise Y. F. Mak, Gary Benson
2007 J jnl
Editorial.
Nucleic Acids Res.
Gary Benson
2007 J jnl
Evolutionary History of Mammalian Transposons Determined by Genome-Wide Defragmentation.
PLoS Comput. Biol.
Joti Giordano, Yongchao Ge, Yevgeniy Gelfand, György Abrusán, Gary Benson, Peter E. Warburton
2007 J jnl
Oligonucleotide fingerprint identification for microarray-based pathogen diagnostic assays.
Bioinform.
Waibhav Tembe, Nela Zavaljevski, Elizabeth A. Bode, Catherine Chase, Jeanne Geyer, Leonard P. Wasieloski, Gary Benson, Jaques Reifman
2007 J jnl
TRDB - The Tandem Repeats Database.
Nucleic Acids Res.
Yevgeniy Gelfand, Alfredo Rodriguez, Gary Benson
2007 J jnl
Tandem repeats over the edit distance.
Bioinform.
Dina Sokol, Gary Benson, Justin Tojeira
2006 — conf
Discovering Frequent Poly-Regions in DNA Sequences.
ICDM Workshops
Panagiotis Papapetrou, Gary Benson, George Kollios
2006 — conf
Indel seeds for homology search.
ISMB (Supplement of Bioinformatics)
Denise Y. F. Mak, Yevgeniy Gelfand, Gary Benson
2006 A* conf
Pattern matching with address errors: rearrangement distances.
SODA
Amihood Amir, Yonatan Aumann, Gary Benson, Avivit Levy, Ohad Lipsky, Ely Porat, Steven Skiena, Uzi Vishne
2005 J jnl
Tandem cyclic alignment.
Discret. Appl. Math.
Gary Benson
2003 C ed.
Algorithms in Bioinformatics, Third International Workshop, WABI 2003, Budapest, Hungary, September 15-20, 2003, Proceedings
WABI
Gary Benson, Roderic D. M. Page
2003 C conf
Composition Alignment.
WABI
Gary Benson
2002 C conf
A new distance measure for comparing sequence profiles based on path lengths along an entropy surface.
ECCB
Gary Benson
2001 B conf
Tandem Cyclic Alignment.
CPM
Gary Benson
1999 A conf
Reconstructing the Duplication History of a Tandem Repeat.
ISMB
Gary Benson, Lan Dong
1998 B conf
An algorithm for finding tandem repeats of unspecified pattern size.
RECOMB
Gary Benson
1998 J jnl
On the Distribution of K-tuple Matches for Sequence Homology: A Constant Time Exact Calculation of the Variance.
J. Comput. Biol.
Gary Benson, X. Su
1998 J jnl
Optimal Parallel Two Dimensional Text Searching on a CREW PRAM.
Inf. Comput.
Amihood Amir, Gary Benson, Martin Farach
1998 J jnl
Two-Dimensional Periodicity in Rectangular Arrays.
SIAM J. Comput.
Amihood Amir, Gary Benson
1997 J jnl
Optimal Two-Dimensional Compressed Matching.
J. Algorithms
Amihood Amir, Gary Benson, Martin Farach
1997 J jnl
Pooling Strategies for Establishing Physical Genome Maps Using FISH.
J. Comput. Biol.
Fengzhu Sun, Gary Benson, Norman Arnheim, Michael S. Waterman
1997 B conf
Pooling strategies for establishing physical genome maps using FISH.
RECOMB
Fengzhu Sun, Gary Benson, Norman Arnheim, Michael S. Waterman
1997 J jnl
Sequence Alignment with Tandem Duplication.
J. Comput. Biol.
Gary Benson
1997 B conf
Sequence alignment with tandem duplication.
RECOMB
Gary Benson
1996 J jnl
Let Sleeping Files Lie: Pattern Matching in Z-Compressed Files.
J. Comput. Syst. Sci.
Amihood Amir, Gary Benson, Martin Farach
1995 J jnl
A Space Efficient Algorithm for Finding the Best Nonoverlapping Alignment Score.
Theor. Comput. Sci.
Gary Benson
1994 B conf
A Space Efficient Algorithm for Finding the Best Non-Overlapping Alignment Score.
CPM
Gary Benson
1994 J jnl
An Alphabet Independent Approach to Two-Dimensional Pattern Matching.
SIAM J. Comput.
Amihood Amir, Gary Benson, Martin Farach
1994 A* conf
Let Sleeping Files Lie: Pattern Matching in Z-compressed Files.
SODA
Amihood Amir, Gary Benson, Martin Farach
1994 A* conf
Optimal Two-Dimensional Compressed Matching.
ICALP
Amihood Amir, Gary Benson, Martin Farach
1993 B conf
Optimal Parallel Two Dimensional Pattern Matching.
SPAA
Amihood Amir, Gary Benson, Martin Farach
1992 A* conf
Alphabet Independent Two Dimensional Matching
STOC
Amihood Amir, Gary Benson, Martin Farach
1992 B conf
Efficient Two-Dimensional Compressed Matching.
Data Compression Conference
Amihood Amir, Gary Benson
1992 A* conf
Two-Dimensional Periodicity and Its Applications.
SODA
Amihood Amir, Gary Benson