Gary An

26 papers B 1Journal 21Unranked 4
YearRankTypeTitle / Venue / Authors
2026 J jnl
Premature atrial and ventricular contraction detection using deep learning and short ECG: A multi-dataset evaluation.
Biomed. Signal Process. Control.
Syed Khairul Bashar, Damien Socia, Solomon Feuerwerker, Emmanuel Dodson, Gary An, Chase Cockrell
2024 J jnl
Examining B-cell dynamics and responsiveness in different inflammatory milieus using an agent-based model.
PLoS Comput. Biol.
Bryan Shin, Gary An, Chase Cockrell
2024 J jnl
Toward mechanistic medical digital twins: some use cases in immunology.
Frontiers Digit. Health
Reinhard C. Laubenbacher, Fred Adler, Gary An, Filippo Castiglione, Stephen Eubank, Luis L. Fonseca, James A. Glazier, Tomás Helikar, Marti Jett-Tilton, Denise Kirschner, Paul Macklin, Borna Mehrad, Beth Moore, Virginia Pasour, Ilya Shmulevich, Amber Smith, Isabel Voigt, Thomas E. Yankeelov, Tjalf Ziemssen
2023 J jnl
Generating synthetic multi-dimensional molecular-mediator time series data for artificial intelligence-based disease trajectory forecasting and drug development digital twins: Considerations.
CoRR
Gary An, Chase Cockrell
2022 J jnl
Building digital twins of the human immune system: toward a roadmap.
npj Digit. Medicine
Reinhard C. Laubenbacher, Anna Niarakis, Tomás Helikar, Gary An, Bruce Shapiro, Rahuman S. Malik-Sheriff, T. J. Sego, Adam C. Knapp, Paul Macklin, James A. Glazier
2022 J jnl
Facilitating automated conversion of scientific knowledge into scientific simulation models with the Machine Assisted Generation, Calibration, and Comparison (MAGCC) Framework.
CoRR
Chase Cockrell, Scott Christley, Gary An
2021 J jnl
Nested active learning for efficient model contextualization and parameterization: pathway to generating simulated populations using multi-scale computational models.
Simul.
Chase Cockrell, Jonathan Ozik, Nick Collier, Gary An
2019 J jnl
Deep Reinforcement Learning and Simulation as a Path Toward Precision Medicine.
J. Comput. Biol.
Brenden K. Petersen, Jiachen Yang, Will S. Grathwohl, Chase Cockrell, Claudio Santiago, Gary An, Daniel M. Faissol
2018 J jnl
Examining the controllability of sepsis using genetic algorithms on an agent-based model of systemic inflammation.
PLoS Comput. Biol.
Chase Cockrell, Gary An
2018 J jnl
Extreme-Scale Dynamic Exploration of a Distributed Agent-Based Model With the EMEWS Framework.
IEEE Trans. Comput. Soc. Syst.
Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Charles M. Macal, Gary An
2018 J jnl
High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow.
BMC Bioinform.
Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Charles M. Macal, Chase Cockrell, Samuel H. Friedman, Ahmadreza Ghaffarizadeh, Randy W. Heiland, Gary An, Paul Macklin
2018 J jnl
Precision medicine as a control problem: Using simulation and deep reinforcement learning to discover adaptive, personalized multi-cytokine therapy for sepsis.
CoRR
Brenden K. Petersen, Jiachen Yang, Will S. Grathwohl, Chase Cockrell, Claudio Santiago, Gary An, Daniel M. Faissol
2015 J jnl
A Computational, Tissue-Realistic Model of Pressure Ulcer Formation in Individuals with Spinal Cord Injury.
PLoS Comput. Biol.
Cordelia Ziraldo, Alexey Solovyev, Ana Allegretti, Shilpa Krishnan, M. Kristi Henzel, Gwendolyn A. Sowa, David M. Brienza, Gary An, Qi Mi, Yoram Vodovotz
2015 J jnl
Computational Studies of the Intestinal Host-Microbiota Interactome.
Comput.
Scott Christley, Chase Cockrell, Gary An
2014 J jnl
Investigation of Inflammation and Tissue Patterning in the Gut Using a Spatially Explicit General-Purpose Model of Enteric Tissue (SEGMEnT).
PLoS Comput. Biol.
Chase Cockrell, Scott Christley, Gary An
2013 J jnl
A multiscale modeling approach to inflammation: A case study in human endotoxemia.
J. Comput. Phys.
Jeremy D. Scheff, Panteleimon D. Mavroudis, Panagiota T. Foteinou, Gary An, Steve E. Calvano, John Doyle, Thomas E. Dick, Stephen F. Lowry, Yoram Vodovotz, Ioannis P. Androulakis
2013 — conf
Examining the dynamics of epithelial metaplasia and pouchitis in an ileal pouch with a spatially-explicit computational multi-scale gut model (MSGM).
SpringSim (ADS)
Chase Cockrell, Scott Christley, Gary An, Eugene Chang, Marc Ward
2012 J jnl
A proposal for augmenting biological model construction with a semi-intelligent computational modeling assistant.
Comput. Math. Organ. Theory
Scott Christley, Gary An
2012 J jnl
Data-parallel techniques for simulating a mega-scale agent-based model of systemic inflammatory response syndrome on graphics processing units.
Simul.
Samuel Alberts, Michael K. Keenan, Roshan M. D'Souza, Gary An
2011 — conf
A proposed method for dynamic knowledge representation via agent-directed composition from biomedical and simulation ontologies: an example using gut mucus layer dynamics.
SpringSim (ADS)
Scott Christley, Gary An
2010 B conf
Djangology: A Light-weight Web-based Tool for Distributed Collaborative Text Annotation.
LREC
Emilia Apostolova, Sean Neilan, Gary An, Noriko Tomuro, Steven L. Lytinen
2010 J jnl
SPARK: A Framework for Multi-Scale Agent-Based Biomedical Modeling.
Int. J. Agent Technol. Syst.
Alexey Solovyev, Maxim Mikheev, Leming Zhou, Joyeeta Dutta-Moscato, Cordelia Ziraldo, Gary An, Yoram Vodovotz, Qi Mi
2010 — conf
SPARK: a framework for multi-scale agent-based biomedical modeling.
SpringSim
Alexey Solovyev, Maxim Mikheev, Leming Zhou, Joyeeta Dutta-Moscato, Cordelia Ziraldo, Gary An, Yoram Vodovotz, Qi Mi
2009 J jnl
Computational disease modeling - fact or fiction?
BMC Syst. Biol.
Jesper Tegnér, Albert Compte, Charles Auffray, Gary An, Gunnar Cedersund, Gilles Clermont, Boris S. Gutkin, Zoltán N. Oltvai, Klaas Enno Stephan, Randy Thomas, Pablo Villoslada
2008 J jnl
Translational Systems Biology of Inflammation.
PLoS Comput. Biol.
Yoram Vodovotz, Márie Csete, John Bartels, Steven Chang, Gary An
2007 — conf
A hybrid simulation model for studying acute inflammatory response.
SpringSim (2)
Wayne W. Wakeland, Louis M. Macovsky, Gary An