Gajendra P. S. Raghava

72 papers Journal 72

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Identification of multiple prognostic biomarker sets for risk stratification in SKCM. Frontiers Bioinform. Shivani Malik, Ritu Tomer, Akanksha Arora, Gajendra P. S. Raghava
2026	J	`jnl`	NfκBin: a machine learning based method for screening TNF-α induced NF-κB inhibitors. Frontiers Bioinform. Shipra Jain, Ritu Tomer, Sumeet Patiyal, Gajendra P. S. Raghava
2025	J	`jnl`	CancerPPD2: an updated repository of anticancer peptides and proteins. Database J. Biol. Databases Curation Milind Chauhan, Amisha Gupta, Ritu Tomer, Gajendra P. S. Raghava
2025	J	`jnl`	CytoLNCpred-a computational method for predicting cytoplasm associated long non-coding RNAs in 15 cell-lines. Frontiers Bioinform. Shubham Choudhury, Naman Kumar Mehta, Gajendra P. S. Raghava
2024	J	`jnl`	A hybrid approach for predicting transcription factors. Frontiers Bioinform. Sumeet Patiyal, Palak Tiwari, Mohit Ghai, Aman Dhapola, Anjali Dhall, Gajendra P. S. Raghava
2024	J	`jnl`	A method for predicting linear and conformational B-cell epitopes in an antigen from its primary sequence. Comput. Biol. Medicine Nishant Kumar, Sadhana Tripathi, Neelam Sharma, Sumeet Patiyal, Naorem Leimarembi Devi, Gajendra P. S. Raghava
2024	J	`jnl`	MRSLpred - a hybrid approach for predicting multi-label subcellular localization of mRNA at the genome scale. Frontiers Bioinform. Shubham Choudhury, Nisha Bajiya, Sumeet Patiyal, Gajendra P. S. Raghava
2024	J	`jnl`	ToxinPred 3.0: An improved method for predicting the toxicity of peptides. Comput. Biol. Medicine Anand Singh Rathore, Shubham Choudhury, Akanksha Arora, Purva Tijare, Gajendra P. S. Raghava
2023	J	`jnl`	A web server for predicting and scanning of IL-5 inducing peptides using alignment-free and alignment-based method. Comput. Biol. Medicine Naorem Leimarembi Devi, Neelam Sharma, Gajendra P. S. Raghava
2023	J	`jnl`	Advances in the field of phage-based therapy with special emphasis on computational resources. Briefings Bioinform. Nisha Bajiya, Anjali Dhall, Suchet Aggarwal, Gajendra P. S. Raghava
2023	J	`jnl`	DMPPred: a tool for identification of antigenic regions responsible for inducing type 1 diabetes mellitus. Briefings Bioinform. Nishant Kumar, Sumeet Patiyal, Shubham Choudhury, Ritu Tomer, Anjali Dhall, Gajendra P. S. Raghava
2023	J	`jnl`	Pfeature: A Tool for Computing Wide Range of Protein Features and Building Prediction Models. J. Comput. Biol. Akshara Pande, Sumeet Patiyal, Anjali Lathwal, Chakit Arora, Dilraj Kaur, Anjali Dhall, Gaurav Mishra, Harpreet Kaur, Neelam Sharma, Shipra Jain, Salman Sadullah Usmani, Piyush Agrawal, Rajesh Kumar, Vinod Kumar, Gajendra P. S. Raghava
2023	J	`jnl`	Prediction of RNA-interacting residues in a protein using CNN and evolutionary profile. Briefings Bioinform. Sumeet Patiyal, Anjali Dhall, Khushboo Bajaj, Harshita Sahu, Gajendra P. S. Raghava
2023	J	`jnl`	Risk assessment of cancer patients based on HLA-I alleles, neobinders and expression of cytokines. Comput. Biol. Medicine Anjali Dhall, Sumeet Patiyal, Harpreet Kaur, Gajendra P. S. Raghava
2023	J	`jnl`	SalivaDB - a comprehensive database for salivary biomarkers in humans. Database J. Biol. Databases Curation Akanksha Arora, Dashleen Kaur, Sumeet Patiyal, Dilraj Kaur, Ritu Tomer, Gajendra P. S. Raghava
2023	J	`jnl`	TNFepitope: A webserver for the prediction of TNF-α inducing epitopes. Comput. Biol. Medicine Anjali Dhall, Sumeet Patiyal, Shubham Choudhury, Shipra Jain, Kashish Narang, Gajendra P. S. Raghava
2022	J	`jnl`	A deep learning-based method for the prediction of DNA interacting residues in a protein. Briefings Bioinform. Sumeet Patiyal, Anjali Dhall, Gajendra P. S. Raghava
2022	J	`jnl`	Collection, compilation and analysis of bacterial vaccines. Comput. Biol. Medicine Satakshi Gupta, Neelam Sharma, Naorem Leimarembi Devi, Shipra Jain, Gajendra P. S. Raghava
2022	J	`jnl`	Computational resources in healthcare. WIREs Data Mining Knowl. Discov. Neelam Sharma, Naorem Leimarembi Devi, Satakshi Gupta, Gajendra P. S. Raghava
2022	J	`jnl`	HLAncPred: a method for predicting promiscuous non-classical HLA binding sites. Briefings Bioinform. Anjali Dhall, Sumeet Patiyal, Gajendra P. S. Raghava
2022	J	`jnl`	IL13Pred: A method for predicting immunoregulatory cytokine IL-13 inducing peptides. Comput. Biol. Medicine Shipra Jain, Anjali Dhall, Sumeet Patiyal, Gajendra P. S. Raghava
2022	J	`jnl`	ToxinPred2: an improved method for predicting toxicity of proteins. Briefings Bioinform. Neelam Sharma, Naorem Leimarembi Devi, Shipra Jain, Gajendra P. S. Raghava
2021	J	`jnl`	AlgPred 2.0: an improved method for predicting allergenic proteins and mapping of IgE epitopes. Briefings Bioinform. Neelam Sharma, Sumeet Patiyal, Anjali Dhall, Akshara Pande, Chakit Arora, Gajendra P. S. Raghava
2021	J	`jnl`	AntiCP 2.0: an updated model for predicting anticancer peptides. Briefings Bioinform. Piyush Agrawal, Dhruv Bhagat, Manish Mahalwal, Neelam Sharma, Gajendra P. S. Raghava
2021	J	`jnl`	ChAlPred: A web server for prediction of allergenicity of chemical compounds. Comput. Biol. Medicine Neelam Sharma, Sumeet Patiyal, Anjali Dhall, Naorem Leimarembi Devi, Gajendra P. S. Raghava
2021	J	`jnl`	Computer-aided prediction and design of IL-6 inducing peptides: IL-6 plays a crucial role in COVID-19. Briefings Bioinform. Anjali Dhall, Sumeet Patiyal, Neelam Sharma, Salman Sadullah Usmani, Gajendra P. S. Raghava
2021	J	`jnl`	Computer-aided prediction of inhibitors against STAT3 for managing COVID-19 associated cytokine storm. Comput. Biol. Medicine Anjali Dhall, Sumeet Patiyal, Neelam Sharma, Naorem Leimarembi Devi, Gajendra P. S. Raghava
2021	J	`jnl`	DenvInD: dengue virus inhibitors database for clinical and molecular research. Briefings Bioinform. Vivek Dhar Dwivedi, Aditya Arya, Pardeep Yadav, Rajesh Kumar, Vinod Kumar, Gajendra P. S. Raghava
2021	J	`jnl`	In-silico identification of subunit vaccine candidates against lung cancer-associated oncogenic viruses. Comput. Biol. Medicine Anjali Lathwal, Rajesh Kumar, Gajendra P. S. Raghava
2021	J	`jnl`	ProCanBio: A Database of Manually Curated Biomarkers for Prostate Cancer. J. Comput. Biol. Dikscha Sapra, Harpreet Kaur, Anjali Dhall, Gajendra P. S. Raghava
2021	J	`jnl`	SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly. Comput. Biol. Medicine Deepika Mathur, Harpreet Kaur, Anjali Dhall, Neelam Sharma, Gajendra P. S. Raghava
2020	J	`jnl`	CancerLivER: a database of liver cancer gene expression resources and biomarkers. Database J. Biol. Databases Curation Harpreet Kaur, Sherry Bhalla, Dilraj Kaur, Gajendra P. S. Raghava
2019	J	`jnl`	Benchmarking of different molecular docking methods for protein-peptide docking. BMC Bioinform. Piyush Agrawal, Harinder Singh, Hemant Kumar Srivastava, Sandeep Singh, Gaurav Kishore, Gajendra P. S. Raghava
2019	J	`jnl`	ImmunoSPdb: an archive of immunosuppressive peptides. Database J. Biol. Databases Curation Salman Sadullah Usmani, Piyush Agrawal, Manika Sehgal, Pradeep Kumar Patel, Gajendra P. S. Raghava
2019	J	`jnl`	PRRDB 2.0: a comprehensive database of pattern-recognition receptors and their ligands. Database J. Biol. Databases Curation Dilraj Kaur, Sumeet Patiyal, Neelam Sharma, Salman Sadullah Usmani, Gajendra P. S. Raghava
2019	J	`jnl`	RareLSD: a manually curated database of lysosomal enzymes associated with rare diseases. Database J. Biol. Databases Curation Sana Akhter, Harpreet Kaur, Piyush Agrawal, Gajendra P. S. Raghava
2019	J	`jnl`	ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank. Database J. Biol. Databases Curation Piyush Agrawal, Sumeet Patiyal, Rajesh Kumar, Vinod Kumar, Harinder Singh, Pawan Kumar Raghav, Gajendra P. S. Raghava
2018	J	`jnl`	AntiTbPdb: a knowledgebase of anti-tubercular peptides. Database J. Biol. Databases Curation Salman Sadullah Usmani, Rajesh Kumar, Vinod Kumar, Sandeep Singh, Gajendra P. S. Raghava
2017	J	`jnl`	Novel in silico tools for designing peptide-based subunit vaccines and immunotherapeutics. Briefings Bioinform. Sandeep Kumar Dhanda, Salman Sadullah Usmani, Piyush Agrawal, Gandharva Nagpal, Ankur Gautam, Gajendra P. S. Raghava
2016	J	`jnl`	CPPsite 2.0: a repository of experimentally validated cell-penetrating peptides. Nucleic Acids Res. Piyush Agrawal, Sherry Bhalla, Salman Sadullah Usmani, Sandeep Singh, Kumardeep Chaudhary, Gajendra P. S. Raghava, Ankur Gautam
2016	J	`jnl`	SATPdb: a database of structurally annotated therapeutic peptides. Nucleic Acids Res. Sandeep Singh, Kumardeep Chaudhary, Sandeep Kumar Dhanda, Sherry Bhalla, Salman Sadullah Usmani, Ankur Gautam, Abhishek Tuknait, Piyush Agrawal, Deepika Mathur, Gajendra P. S. Raghava
2015	J	`jnl`	AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides. Nucleic Acids Res. Ravi Kumar, Kumardeep Chaudhary, Minakshi Sharma, Gandharva Nagpal, Jagat Singh Chauhan, Sandeep Singh, Ankur Gautam, Gajendra P. S. Raghava
2015	J	`jnl`	CancerPPD: a database of anticancer peptides and proteins. Nucleic Acids Res. Atul Tyagi, Abhishek Tuknait, Priya Anand, Sudheer Gupta, Minakshi Sharma, Deepika Mathur, Anshika Joshi, Sandeep Singh, Ankur Gautam, Gajendra P. S. Raghava
2014	J	`jnl`	Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides. Nucleic Acids Res. Ankur Gautam, Kumardeep Chaudhary, Sandeep Singh, Anshika Joshi, Priya Anand, Abhishek Tuknait, Deepika Mathur, Grish C. Varshney, Gajendra P. S. Raghava
2014	J	`jnl`	ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures. Database J. Biol. Databases Curation Divya Mehta, Priya Anand, Vineet Kumar, Anshika Joshi, Deepika Mathur, Sandeep Singh, Abhishek Tuknait, Kumardeep Chaudhary, Shailendra K. Gautam, Ankur Gautam, Grish C. Varshney, Gajendra P. S. Raghava
2014	J	`jnl`	Prediction of uridine modifications in tRNA sequences. BMC Bioinform. Bharat Panwar, Gajendra P. S. Raghava
2013	J	`jnl`	NPACT: Naturally Occurring Plant-based Anti-cancer Compound-Activity-Target database. Nucleic Acids Res. Manu Mangal, Parul Sagar, Harinder Singh, Gajendra P. S. Raghava, Subhash M. Agarwal
2013	J	`jnl`	PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors. BMC Bioinform. Firoz Ahmed, Rakesh Kaundal, Gajendra P. S. Raghava
2013	J	`jnl`	Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information. BMC Bioinform. Bharat Panwar, Sudheer Gupta, Gajendra P. S. Raghava
2012	J	`jnl`	ProGlycProt: a repository of experimentally characterized prokaryotic glycoproteins. Nucleic Acids Res. Aadil H. Bhat, Homchoru Mondal, Jagat Singh Chauhan, Gajendra P. S. Raghava, Amrish Methi, Alka Rao
2012	J	`jnl`	ccPDB: compilation and creation of data sets from Protein Data Bank. Nucleic Acids Res. Harinder Singh, Jagat Singh Chauhan, M. Michael Gromiha, Gajendra P. S. Raghava
2010	J	`jnl`	AntiBP2: improved version of antibacterial peptide prediction. BMC Bioinform. Sneh Lata, Nitish K. Mishra, Gajendra P. S. Raghava
2010	J	`jnl`	Identification of NAD interacting residues in proteins. BMC Bioinform. Hifzur Rahman Ansari, Gajendra P. S. Raghava
2010	J	`jnl`	K BMC Bioinform. Aarti Garg, Rupinder Tewari, Gajendra P. S. Raghava
2010	J	`jnl`	Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information. BMC Bioinform. Nitish K. Mishra, Gajendra P. S. Raghava
2010	J	`jnl`	Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information. BMC Bioinform. Jagat Singh Chauhan, Nitish K. Mishra, Gajendra P. S. Raghava
2010	J	`jnl`	Virtual Screening of potential drug-like inhibitors against Lysine/DAP pathway of BMC Bioinform. Aarti Garg, Rupinder Tewari, Gajendra P. S. Raghava
2009	J	`jnl`	Identification of ATP binding residues of a protein from its primary sequence. BMC Bioinform. Jagat Singh Chauhan, Nitish K. Mishra, Gajendra P. S. Raghava
2009	J	`jnl`	Prediction of Polyadenylation Signals in Human DNA Sequences using Nucleotide Frequencies. Silico Biol. Firoz Ahmed, Manish Kumar, Gajendra P. S. Raghava
2009	J	`jnl`	Prediction of guide strand of microRNAs from its sequence and secondary structure. BMC Bioinform. Firoz Ahmed, Hifzur Rahman Ansari, Gajendra P. S. Raghava
2009	J	`jnl`	Prediction of nuclear proteins using SVM and HMM models. BMC Bioinform. Manish Kumar, Gajendra P. S. Raghava
2008	J	`jnl`	A Machine Learning Based Method for the Prediction of Secretory Proteins Using Amino Acid Composition, Their Order and Similarity-Search. Silico Biol. Aarti Garg, Gajendra P. S. Raghava
2008	J	`jnl`	COPid: Composition Based Protein Identification. Silico Biol. Manish Kumar, Varun Thakur, Gajendra P. S. Raghava
2008	J	`jnl`	ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins. BMC Bioinform. Aarti Garg, Gajendra P. S. Raghava
2008	J	`jnl`	Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles. BMC Bioinform. Ruchi Verma, Ajit Tiwari, Sukhwinder Kaur, Grish C. Varshney, Gajendra P. S. Raghava
2007	J	`jnl`	BTXpred: Prediction of Bacterial Toxins. Silico Biol. Sudipto Saha, Gajendra P. S. Raghava
2007	J	`jnl`	Identification of DNA-binding proteins using support vector machines and evolutionary profiles. BMC Bioinform. Manish Kumar, M. Michael Gromiha, Gajendra P. S. Raghava
2007	J	`jnl`	Prediction of Neurotoxins Based on Their Function and Source. Silico Biol. Sudipto Saha, Gajendra P. S. Raghava
2007	J	`jnl`	Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs. BMC Bioinform. Mamoon Rashid, Sudipto Saha, Gajendra P. S. Raghava
2006	J	`jnl`	Machine learning techniques in disease forecasting: a case study on rice blast prediction. BMC Bioinform. Rakesh Kaundal, Amar S. Kapoor, Gajendra P. S. Raghava
2006	J	`jnl`	Prediction of C Silico Biol. Harpreet Kaur, Gajendra P. S. Raghava
2005	J	`jnl`	Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein. BMC Bioinform. Gajendra P. S. Raghava, Joon H. Han