Gail L. Rosen

29 papers B 3C 2Misc 1Journal 16Unranked 6
YearRankTypeTitle / Venue / Authors
2025 — conf
MicroTraitLLM: A RAG-based, Microbe-focused LLM for Researchers.
BCB
Glen Rogers, James R. Brown, Bahrad A. Sokhansanj, Joshua Chang Mell, Gail L. Rosen
2025 J jnl
Predicting Microbial Ontology and Pathogen Risk from Environmental Metadata with Large Language Models.
CoRR
Hyunwoo Yoo, Gail L. Rosen
2025 — ed.
Proceedings of the 16th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2025, Element Philadelphia Downtown, Philadelphia, PA, USA, October 12-15, 2025
BCB
Xinghua Mindy Shi, Xiaoning Qian, Minghan Chen, Jacob M. Luber, Gail L. Rosen, Yunan Luo
2025 J jnl
The Naïve Bayes classifier++ for metagenomic taxonomic classification - query evaluation.
Bioinform.
Haozhe Duan, Gavin L. A. Hearne, Robi Polikar, Gail L. Rosen
2024 — conf
Normalized Compression Distance for DNA Classification.
BCB
Gavin L. A. Hearne, Mohammad S. Refahi, Haozhe Neil Duan, James R. Brown, Gail L. Rosen
2024 J jnl
Streamlining Computational Fragment-Based Drug Discovery through Evolutionary Optimization Informed by Ligand-Based Virtual Prescreening.
J. Chem. Inf. Model.
Rohan Chandraghatgi, Hai-Feng Ji, Gail L. Rosen, Bahrad A. Sokhansanj
2022 J jnl
MetaMutationalSigs: comparison of mutational signature refitting results made easy.
Bioinform.
Palash Pandey, Sanjeevani Arora, Gail L. Rosen
2022 J jnl
Predicting COVID-19 disease severity from SARS-CoV-2 spike protein sequence by mixed effects machine learning.
Comput. Biol. Medicine
Bahrad A. Sokhansanj, Gail L. Rosen
2021 — conf
Incremental & Semi-Supervised Learning for Functional Analysis of Protein Sequences.
SSCI
Mali Halac, Bahrad A. Sokhansanj, William L. Trimble, Thomas Coard, Norman C. Sabin, Emrecan Ozdogan, Robi Polikar, Gail L. Rosen
2021 J jnl
Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network.
PLoS Comput. Biol.
Zhengqiao Zhao, Stephen Woloszynek, Felix Agbavor, Joshua Chang Mell, Bahrad A. Sokhansanj, Gail L. Rosen
2020 J jnl
Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization.
PLoS Comput. Biol.
Zhengqiao Zhao, Bahrad A. Sokhansanj, Charvi Malhotra, Kitty Zheng, Gail L. Rosen
2019 J jnl
16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses.
PLoS Comput. Biol.
Stephen Woloszynek, Zhengqiao Zhao, Jian Chen, Gail L. Rosen
2014 J jnl
Characterizing the Empirical Distribution of Prokaryotic Genome
J. Comput. Biol.
Loni Philip Tabb, Wei Zhao, Jingyu Huang, Gail L. Rosen
2014 B conf
Domain adaptation bounds for multiple expert systems under concept drift.
IJCNN
Gregory Ditzler, Gail L. Rosen, Robi Polikar
2014 — conf
Feature subset selection for inferring relative importance of taxonomy.
BCB
Gregory Ditzler, Gail L. Rosen
2014 J jnl
POGO-DB - a database of pairwise-comparisons of genomes and conserved orthologous genes.
Nucleic Acids Res.
Yemin Lan, J. Calvin Morrison, Ruth Hershberg, Gail L. Rosen
2014 C conf
Scaling a neyman-pearson subset selection approach via heuristics for mining massive data.
CIDM
Gregory Ditzler, Matthew Austen, Gail L. Rosen, Robi Polikar
2012 J jnl
Exploiting the Functional and Taxonomic Structure of Genomic Data by Probabilistic Topic Modeling.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xin Chen, Xiaohua Hu, Tze Yee Lim, Xiajiong Shen, E. K. Park, Gail L. Rosen
2012 J jnl
Inquiry-Based Learning Through Image Processing [dsp Education].
IEEE Signal Process. Mag.
Gail L. Rosen, Jason Silverman, Steven D. Essinger
2012 B conf
Transductive learning algorithms for nonstationary environments.
IJCNN
Gregory Ditzler, Gail L. Rosen, Robi Polikar
2011 J jnl
Combining gene prediction methods to improve metagenomic gene annotation.
BMC Bioinform.
Non G. Yok, Gail L. Rosen
2011 J jnl
Information-theoretic approaches to SVM feature selection for metagenome read classification.
Comput. Biol. Chem.
Elaine Garbarine, Joseph DePasquale, Vinay Gadia, Robi Polikar, Gail L. Rosen
2011 J jnl
NBC: the Naïve Bayes Classification tool webserver for taxonomic classification of metagenomic reads.
Bioinform.
Gail L. Rosen, Erin R. Reichenberger, Aaron M. Rosenfeld
2010 Misc conf
Benchmarking BLAST Accuracy of Genus/Phyla Classification of Metagenomic Reads.
Pacific Symposium on Biocomputing
Steven D. Essinger, Gail L. Rosen
2010 B conf
Neural network-based taxonomic clustering for metagenomics.
IJCNN
Steven D. Essinger, Robi Polikar, Gail L. Rosen
2010 C conf
The Effect of Sequence Error and Partial Training Data on BLAST Accuracy.
BIBE
Steven D. Essinger, Gail L. Rosen
2008 J jnl
Metagenome Fragment Classification Using N-Mer Frequency Profiles.
Adv. Bioinformatics
Gail L. Rosen, Elaine Garbarine, Diamantino Caseiro, Robi Polikar, Bahrad A. Sokhansanj
2006 — conf
Chemical Source Localization in Unknown Turbulence Using the Cross-Correlation Method.
ICASSP (3)
Gail L. Rosen, Paul E. Hasler
2003 — conf
Investigation of coding structure in DNA.
ICASSP (2)
Gail L. Rosen, Jeffrey D. Moore