Gail Binkley

34 papers Journal 31Unranked 3
YearRankTypeTitle / Venue / Authors
2019 J jnl
Integration of macromolecular complex data into the Saccharomyces Genome Database.
Database J. Biol. Databases Curation
Edith D. Wong, Marek S. Skrzypek, Shuai Weng, Gail Binkley, Birgit H. M. Meldal, Livia Perfetto, Sandra E. Orchard, Stacia R. Engel, J. Michael Cherry, SGD Project
2018 J jnl
Saccharomyces genome database informs human biology.
Nucleic Acids Res.
Marek S. Skrzypek, Robert S. Nash, Edith D. Wong, Kevin A. MacPherson, Sage T. Hellerstedt, Stacia R. Engel, Kalpana Karra, Shuai Weng, Travis K. Sheppard, Gail Binkley, Matt Simison, Stuart R. Miyasato, J. Michael Cherry
2018 J jnl
Updated regulation curation model at the Saccharomyces Genome Database.
Database J. Biol. Databases Curation
Stacia R. Engel, Marek S. Skrzypek, Sage T. Hellerstedt, Edith D. Wong, Robert S. Nash, Shuai Weng, Gail Binkley, Travis K. Sheppard, Kalpana Karra, J. Michael Cherry
2017 J jnl
The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data.
Nucleic Acids Res.
Marek S. Skrzypek, Jonathan Binkley, Gail Binkley, Stuart R. Miyasato, Matt Simison, Gavin Sherlock
2016 J jnl
From one to many: expanding the
Database J. Biol. Databases Curation
Stacia R. Engel, Shuai Weng, Gail Binkley, Kelley M. Paskov, Giltae Song, J. Michael Cherry
2016 J jnl
Integration of new alternative reference strain genome sequences into the
Database J. Biol. Databases Curation
Giltae Song, Rama Balakrishnan, Gail Binkley, Maria C. Costanzo, Kyla S. Dalusag, Janos Demeter, Stacia R. Engel, Sage T. Hellerstedt, Kalpana Karra, Benjamin C. Hitz, Robert S. Nash, Kelley M. Paskov, Travis K. Sheppard, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, J. Michael Cherry
2016 — conf
Making Linked Data SPARQL with the InterMine Biological Data Warehouse.
SWAT4LS
Maxime Déraspe, Gail Binkley, Daniela Butano, Matthew Chadwick, J. Michael Cherry, Justin Clark-Casey, Sergio Contrino, Jacques Corbeil, Joshua Heimbach, Kalpana Karra, Rachel Lyne, Julie M. Sullivan, Yo Yehudi, Gos Micklem, Michel Dumontier
2016 — conf
Semantic Research Platform for Model Organisms.
BMDID@ISWC
Maxime Déraspe, Kalpana Karra, Gail Binkley, Julie M. Sullivan, Gos Micklem, Jacques Corbeil, J. Michael Cherry, Michel Dumontier
2016 J jnl
The
Nucleic Acids Res.
Travis K. Sheppard, Benjamin C. Hitz, Stacia R. Engel, Giltae Song, Rama Balakrishnan, Gail Binkley, Maria C. Costanzo, Kyla S. Dalusag, Janos Demeter, Sage T. Hellerstedt, Kalpana Karra, Robert S. Nash, Kelley M. Paskov, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, J. Michael Cherry
2014 J jnl
The
Nucleic Acids Res.
Jonathan Binkley, Martha B. Arnaud, Diane O. Inglis, Marek S. Skrzypek, Prachi Shah, Farrell Wymore, Gail Binkley, Stuart R. Miyasato, Matt Simison, Gavin Sherlock
2014 J jnl
The
Nucleic Acids Res.
Gustavo C. Cerqueira, Martha B. Arnaud, Diane O. Inglis, Marek S. Skrzypek, Gail Binkley, Matt Simison, Stuart R. Miyasato, Jonathan Binkley, Joshua Orvis, Prachi Shah, Farrell Wymore, Gavin Sherlock, Jennifer R. Wortman
2012 J jnl
Saccharomyces Genome Database: the genomics resource of budding yeast.
Nucleic Acids Res.
J. Michael Cherry, Eurie L. Hong, Craig Amundsen, Rama Balakrishnan, Gail Binkley, Esther T. Chan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Kalpana Karra, Cynthia J. Krieger, Stuart R. Miyasato, Robert S. Nash, Julie Park, Marek S. Skrzypek, Matt Simison, Shuai Weng, Edith D. Wong
2012 J jnl
The
Nucleic Acids Res.
Martha B. Arnaud, Gustavo C. Cerqueira, Diane O. Inglis, Marek S. Skrzypek, Jonathan Binkley, Marcus C. Chibucos, Jonathan Crabtree, Clinton Howarth, Joshua Orvis, Prachi Shah, Farrell Wymore, Gail Binkley, Stuart R. Miyasato, Matt Simison, Gavin Sherlock, Jennifer R. Wortman
2012 J jnl
The
Nucleic Acids Res.
Diane O. Inglis, Martha B. Arnaud, Jonathan Binkley, Prachi Shah, Marek S. Skrzypek, Farrell Wymore, Gail Binkley, Stuart R. Miyasato, Matt Simison, Gavin Sherlock
2012 J jnl
YeastMine - an integrated data warehouse for
Database J. Biol. Databases Curation
Rama Balakrishnan, Julie Park, Kalpana Karra, Benjamin C. Hitz, Gail Binkley, Eurie L. Hong, Julie M. Sullivan, Gos Micklem, J. Michael Cherry
2010 J jnl
New tools at the
Nucleic Acids Res.
Marek S. Skrzypek, Martha B. Arnaud, Maria C. Costanzo, Diane O. Inglis, Prachi Shah, Gail Binkley, Stuart R. Miyasato, Gavin Sherlock
2010 J jnl
The
Nucleic Acids Res.
Martha B. Arnaud, Marcus C. Chibucos, Maria C. Costanzo, Jonathan Crabtree, Diane O. Inglis, Adil Lotia, Joshua Orvis, Prachi Shah, Marek S. Skrzypek, Gail Binkley, Stuart R. Miyasato, Jennifer R. Wortman, Gavin Sherlock
2009 J jnl
New mutant phenotype data curation system in the
Database J. Biol. Databases Curation
Maria C. Costanzo, Marek S. Skrzypek, Robert S. Nash, Edith D. Wong, Gail Binkley, Stacia R. Engel, Benjamin C. Hitz, Eurie L. Hong, J. Michael Cherry
2008 J jnl
Gene Ontology annotations at SGD: new data sources and annotation methods.
Nucleic Acids Res.
Eurie L. Hong, Rama Balakrishnan, Qing Dong, Karen R. Christie, Julie Park, Gail Binkley, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Cynthia J. Krieger, Michael S. Livstone, Stuart R. Miyasato, Robert S. Nash, Rose Oughtred, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, Kathy K. Zhu, Kara Dolinski, David Botstein, J. Michael Cherry
2007 J jnl
Expanded protein information at SGD: new pages and proteome browser.
Nucleic Acids Res.
Robert S. Nash, Shuai Weng, Benjamin C. Hitz, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Michael S. Livstone, Rose Oughtred, Julie Park, Marek S. Skrzypek, Chandra L. Theesfeld, Gail Binkley, Qing Dong, Christopher Lane, Stuart R. Miyasato, Anand Sethuraman, Mark Schroeder, Kara Dolinski, David Botstein, J. Michael Cherry
2007 J jnl
Sequence resources at the
Nucleic Acids Res.
Martha B. Arnaud, Maria C. Costanzo, Marek S. Skrzypek, Prachi Shah, Gail Binkley, Christopher Lane, Stuart R. Miyasato, Gavin Sherlock
2006 J jnl
Genome Snapshot: a new resource at the
Nucleic Acids Res.
Jodi E. Hirschman, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Eurie L. Hong, Michael S. Livstone, Robert S. Nash, Julie Park, Rose Oughtred, Marek S. Skrzypek, Barry Starr, Chandra L. Theesfeld, Jennifer M. Williams, Rey Andrada, Gail Binkley, Qing Dong, Christopher Lane, Stuart R. Miyasato, Anand Sethuraman, Mark Schroeder, Mayank K. Thanawala, Shuai Weng, Kara Dolinski, David Botstein, J. Michael Cherry
2005 J jnl
Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the
Nucleic Acids Res.
Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Robert S. Nash, Rose Oughtred, Marek S. Skrzypek, Chandra L. Theesfeld, Gail Binkley, Qing Dong, Christopher Lane, Anand Sethuraman, Shuai Weng, David Botstein, J. Michael Cherry
2005 J jnl
The
Nucleic Acids Res.
Martha B. Arnaud, Maria C. Costanzo, Marek S. Skrzypek, Gail Binkley, Christopher Lane, Stuart R. Miyasato, Gavin Sherlock
2004 J jnl
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.
Nucleic Acids Res.
Karen R. Christie, Shuai Weng, Rama Balakrishnan, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Becket Feierbach, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Laurie Issel-Tarver, Robert S. Nash, Anand Sethuraman, Barry Starr, Chandra L. Theesfeld, Rey Andrada, Gail Binkley, Qing Dong, Christopher Lane, Mark Schroeder, David Botstein, J. Michael Cherry
2004 J jnl
Saccharomyces genome database: Underlying principles and organisation.
Briefings Bioinform.
Selina S. Dwight, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Kara Dolinski, Stacia R. Engel, Becket Feierbach, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Laurie Issel-Tarver, Robert S. Nash, Anand Sethuraman, Barry Starr, Chandra L. Theesfeld, Rey Andrada, Gail Binkley, Qing Dong, Christopher Lane, Mark Schroeder, Shuai Weng, David Botstein, J. Michael Cherry
2003 — conf
Gene Function, Metabolic Pathways and Comparative Genomics in Yeast.
CSB
Qing Dong, Rama Balakrishnan, Gail Binkley, Karen R. Christie, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Robert S. Nash, Laurie Issel-Tarver, Anand Sethuraman, Chandra L. Theesfeld, Shuai Weng, David Botstein, J. Michael Cherry
2003 J jnl
SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data.
Nucleic Acids Res.
Maximilian Diehn, Gavin Sherlock, Gail Binkley, Heng jin, John C. Matese, Tina Hernandez-Boussard, Christian A. Rees, J. Michael Cherry, David Botstein, Patrick O. Brown, Ash A. Alizadeh
2003 J jnl
Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins.
Nucleic Acids Res.
Shuai Weng, Qing Dong, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Eurie L. Hong, Laurie Issel-Tarver, Anand Sethuraman, Chandra L. Theesfeld, Rey Andrada, Gail Binkley, Christopher Lane, Mark Schroeder, David Botstein, J. Michael Cherry
2003 J jnl
The Stanford Microarray Database: data access and quality assessment tools.
Nucleic Acids Res.
Jeremy Gollub, Catherine A. Ball, Gail Binkley, Janos Demeter, David B. Finkelstein, Joan M. Hebert, Tina Hernandez-Boussard, Heng jin, Miroslava Kaloper, John C. Matese, Mark Schroeder, Patrick O. Brown, David Botstein, Gavin Sherlock
2002 J jnl
Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO).
Nucleic Acids Res.
Selina S. Dwight, Midori A. Harris, Kara Dolinski, Catherine A. Ball, Gail Binkley, Karen R. Christie, Dianna G. Fisk, Laurie Issel-Tarver, Mark Schroeder, Gavin Sherlock, Anand Sethuraman, Shuai Weng, David Botstein, J. Michael Cherry
2001 J jnl
Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data.
Nucleic Acids Res.
Catherine A. Ball, Heng jin, Gavin Sherlock, Shuai Weng, John C. Matese, Rey Andrada, Gail Binkley, Kara Dolinski, Selina S. Dwight, Midori A. Harris, Laurie Issel-Tarver, Mark Schroeder, David Botstein, J. Michael Cherry
2001 J jnl
The Stanford Microarray Database.
Nucleic Acids Res.
Gavin Sherlock, Tina Hernandez-Boussard, Andrew Kasarskis, Gail Binkley, John C. Matese, Selina S. Dwight, Miroslava Kaloper, Shuai Weng, Heng jin, Catherine A. Ball, Michael B. Eisen, Paul T. Spellman, Patrick O. Brown, David Botstein, J. Michael Cherry
2000 J jnl
Integrating functional genomic information into the Saccharomyces Genome Database.
Nucleic Acids Res.
Catherine A. Ball, Kara Dolinski, Selina S. Dwight, Midori A. Harris, Laurie Issel-Tarver, Andrew Kasarskis, Charles R. Scafe, Gavin Sherlock, Gail Binkley, Heng jin, Miroslava Kaloper, Sidney D. Orr, Mark Schroeder, Shuai Weng, Yan Zhu, David Botstein, J. Michael Cherry