Gabriele Orlando

15 papers Journal 15
YearRankTypeTitle / Venue / Authors
2026 J jnl
Superradiant Quantum Phase Transition in Open Systems: System-Bath Interaction at the Critical Point.
Quantum
Daniele Lamberto, Gabriele Orlando, Salvatore Savasta
2025 J jnl
Charting the structure-sequence landscape of light chain amyloids.
Bioinform.
Gabriele Orlando, Rodrigo Gallardo, Alicia Colla, Joost Schymkowitz, Frederic Rousseau
2025 J jnl
FoldX force field revisited, an improved version.
Bioinform.
Javier Delgado, Raul Reche, Damiano Cianferoni, Gabriele Orlando, Rob van der Kant, Frederic Rousseau, Joost Schymkowitz, Luis Serrano
2024 J jnl
Integrating physics in deep learning algorithms: a force field as a PyTorch module.
Bioinform.
Gabriele Orlando, Luis Serrano, Joost Schymkowitz, Frederic Rousseau
2022 J jnl
Editorial: Towards genome interpretation: Computational methods to model the genotype-phenotype relationship.
Frontiers Bioinform.
Daniele Raimondi, Gabriele Orlando, Nora Verplaetse, Piero Fariselli, Yves Moreau
2021 J jnl
In silico prediction of in vitro protein liquid-liquid phase separation experiments outcomes with multi-head neural attention.
Bioinform.
Daniele Raimondi, Gabriele Orlando, Emiel Michiels, Donya Pakravan, Anna Bratek-Skicki, Ludo Van Den Bosch, Yves Moreau, Frederic Rousseau, Joost Schymkowitz
2021 J jnl
b2bTools: online predictions for protein biophysical features and their conservation.
Nucleic Acids Res.
Luciano Porto Kagami, Gabriele Orlando, Daniele Raimondi, François Ancien, Bhawna Dixit, Jose Gavaldá-García, Pathmanaban Ramasamy, Joel Roca-Martínez, Konstantina Tzavella, Wim F. Vranken
2020 J jnl
Accurate prediction of protein beta-aggregation with generalized statistical potentials.
Bioinform.
Gabriele Orlando, Alexandra Silva, Sandra Macedo-Ribeiro, Daniele Raimondi, Wim F. Vranken
2020 J jnl
Insight into the protein solubility driving forces with neural attention.
PLoS Comput. Biol.
Daniele Raimondi, Gabriele Orlando, Piero Fariselli, Yves Moreau
2020 J jnl
ShiftCrypt: a web server to understand and biophysically align proteins through their NMR chemical shift values.
Nucleic Acids Res.
Gabriele Orlando, Daniele Raimondi, Luciano Porto Kagami, Wim F. Vranken
2019 J jnl
Computational identification of prion-like RNA-binding proteins that form liquid phase-separated condensates.
Bioinform.
Gabriele Orlando, Daniele Raimondi, Francesco Tabaro, Francesco Codicè, Yves Moreau, Wim F. Vranken
2018 J jnl
Ultra-fast global homology detection with Discrete Cosine Transform and Dynamic Time Warping.
Bioinform.
Daniele Raimondi, Gabriele Orlando, Yves Moreau, Wim F. Vranken
2017 J jnl
DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins.
Nucleic Acids Res.
Daniele Raimondi, Ibrahim Tanyalcin, Julien Ferté, Andrea M. Gazzo, Gabriele Orlando, Tom Lenaerts, Marianne Rooman, Wim F. Vranken
2017 J jnl
SVM-dependent pairwise HMM: an application to protein pairwise alignments.
Bioinform.
Gabriele Orlando, Daniele Raimondi, Taushif Khan, Tom Lenaerts, Wim F. Vranken
2015 J jnl
Clustering-based model of cysteine co-evolution improves disulfide bond connectivity prediction and reduces homologous sequence requirements.
Bioinform.
Daniele Raimondi, Gabriele Orlando, Wim F. Vranken