Gabriel Valiente

88 papers B 7C 7Misc 1Journal 54Unranked 14

Year	Rank	Type	Title / Venue / Authors
2024	C	`conf`	Minimizing External Vertices in Hypergraph Orientations. ISCO Alberto José Ferrari, Valeria A. Leoni, Graciela L. Nasini, Gabriel Valiente
2024	J	`jnl`	The J. Comput. Biol. Elahe Khayatian, Gabriel Valiente, Louxin Zhang
2023	—	`conf`	The K-Robinson Foulds Measures for Labeled Trees. RECOMB-CG Elahe Khayatian, Gabriel Valiente, Louxin Zhang
2022	J	`jnl`	Adjacency Maps and Efficient Graph Algorithms. Algorithms Gabriel Valiente
2021	—	`book`	Algorithms on Trees and Graphs - With Python Code, Second Edition Gabriel Valiente
2021	J	`jnl`	The Generalized Robinson-Foulds Distance for Phylogenetic Trees. J. Comput. Biol. Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2020	—	`conf`	A Generalized Robinson-Foulds Distance for Clonal Trees, Mutation Trees, and Phylogenetic Trees and Networks. BCB Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2020	J	`jnl`	AligNet: alignment of protein-protein interaction networks. BMC Bioinform. Adrià Alcalà, Ricardo Alberich, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2020	J	`jnl`	Alignment of biological networks by integer linear programming: virus-host protein-protein interaction networks. BMC Bioinform. Mercè Llabrés, Gabriel Riera, Francesc Rosselló, Gabriel Valiente
2018	J	`jnl`	Unbiased Taxonomic Annotation of Metagenomic Samples. J. Comput. Biol. Bruno Fosso, Graziano Pesole, Francesc Rosselló, Gabriel Valiente
2017	J	`jnl`	MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data. Bioinform. Bruno Fosso, Monica Santamaria, Mattia D'Antonio, Domenica Lovero, Giacomo Corrado, Enrico Vizza, N. Pássaro, Anna Rosa Garbuglia, M. R. Capobianchi, Marco Crescenzi, Gabriel Valiente, Graziano Pesole
2017	—	`conf`	Unbiased Taxonomic Annotation of Metagenomic Samples. ISBRA Bruno Fosso, Graziano Pesole, Francesc Rosselló, Gabriel Valiente
2015	J	`jnl`	BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS. BMC Bioinform. Bruno Fosso, Monica Santamaria, Marinella Marzano, Daniel Alonso-Alemany, Gabriel Valiente, Giacinto Donvito, Alfonso Monaco, Pasquale Notarangelo, Graziano Pesole
2014	J	`jnl`	Further Steps in TANGO: improved taxonomic assignment in metagenomics. Bioinform. Daniel Alonso-Alemany, Aurélien Barré, Stefano Beretta, Paola Bonizzoni, Macha Nikolski, Gabriel Valiente
2012	J	`jnl`	Editorial. Briefings Bioinform. Gabriel Valiente, Graziano Pesole
2012	J	`jnl`	Faster computation of the Robinson-Foulds distance between phylogenetic networks. Inf. Sci. Tetsuo Asano, Jesper Jansson, Kunihiko Sadakane, Ryuhei Uehara, Gabriel Valiente
2012	J	`jnl`	Reference databases for taxonomic assignment in metagenomics. Briefings Bioinform. Monica Santamaria, Bruno Fosso, Arianna Consiglio, Giorgio De Caro, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Marinella Marzano, Daniel Alonso-Alemany, Gabriel Valiente, Graziano Pesole
2011	J	`jnl`	CPM 2006. J. Discrete Algorithms Moshe Lewenstein, Gabriel Valiente
2011	J	`jnl`	Comparison of Galled Trees. IEEE ACM Trans. Comput. Biol. Bioinform. Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2011	J	`jnl`	Computational challenges of sequence classification in microbiomic data. Briefings Bioinform. Paolo Ribeca, Gabriel Valiente
2011	J	`jnl`	Flexible taxonomic assignment of ambiguous sequencing reads. BMC Bioinform. José Carlos Clemente, Jesper Jansson, Gabriel Valiente
2010	Misc	`conf`	Accurate Taxonomic Assignment of Short Pyrosequencing Reads. Pacific Symposium on Biocomputing José Carlos Clemente, Jesper Jansson, Gabriel Valiente
2010	J	`jnl`	An optimized TOPS+ comparison method for enhanced TOPS models. BMC Bioinform. Mallika Veeramalai, David R. Gilbert, Gabriel Valiente
2010	J	`jnl`	Characterization of phylogenetic networks with NetTest. BMC Bioinform. Miguel Arenas, Mateus Patricio, David Posada, Gabriel Valiente
2010	B	`conf`	Faster Computation of the Robinson-Foulds Distance between Phylogenetic Networks. CPM Tetsuo Asano, Jesper Jansson, Kunihiko Sadakane, Ryuhei Uehara, Gabriel Valiente
2010	J	`jnl`	Path lengths in tree-child time consistent hybridization networks. Inf. Sci. Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2009	J	`jnl`	All that Glisters is not Galled CoRR Francesc Rosselló, Gabriel Valiente
2009	J	`jnl`	An algebraic metric for phylogenetic trees. Appl. Math. Lett. Ricardo Alberich, Gabriel Cardona, Francesc Rosselló, Gabriel Valiente
2009	—	`book`	Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R. Gabriel Valiente
2009	J	`jnl`	Comparison of Galled Trees CoRR Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2009	J	`jnl`	Comparison of Tree-Child Phylogenetic Networks. IEEE ACM Trans. Comput. Biol. Bioinform. Gabriel Cardona, Francesc Rosselló, Gabriel Valiente
2009	J	`jnl`	Metrics for Phylogenetic Networks I: Generalizations of the Robinson-Foulds Metric. IEEE ACM Trans. Comput. Biol. Bioinform. Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2009	J	`jnl`	Metrics for Phylogenetic Networks II: Nodal and Triplets Metrics. IEEE ACM Trans. Comput. Biol. Bioinform. Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2009	J	`jnl`	On Nakhleh's Metric for Reduced Phylogenetic Networks. IEEE ACM Trans. Comput. Biol. Bioinform. Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2009	J	`jnl`	Optimized ancestral state reconstruction using Sankoff parsimony. BMC Bioinform. José Carlos Clemente, Kazuho Ikeo, Gabriel Valiente, Takashi Gojobori
2009	J	`jnl`	The comparison of tree-sibling time consistent phylogenetic networks is graph isomorphism-complete CoRR Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2008	J	`jnl`	A Distance Metric for Tree-Sibling Time Consistent Phylogenetic Networks CoRR Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2008	J	`jnl`	A distance metric for a class of tree-sibling phylogenetic networks. Bioinform. Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2008	J	`jnl`	A perl package and an alignment tool for phylogenetic networks. BMC Bioinform. Gabriel Cardona, Francesc Rosselló, Gabriel Valiente
2008	B	`conf`	Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs. RECOMB Michael Sammeth, Gabriel Valiente, Roderic Guigó
2008	J	`jnl`	Extended Newick: it is time for a standard representation of phylogenetic networks. BMC Bioinform. Gabriel Cardona, Francesc Rosselló, Gabriel Valiente
2008	J	`jnl`	Nodal distances for rooted phylogenetic trees. CoRR Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2008	J	`jnl`	Path lengths in tree-child time consistent hybridization networks CoRR Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2008	J	`jnl`	Seeded Tree Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson
2007	J	`jnl`	A Perl Package and an Alignment Tool for Phylogenetic Networks CoRR Gabriel Cardona, Francesc Rosselló, Gabriel Valiente
2007	J	`jnl`	Comparison of Tree-Child Phylogenetic Networks CoRR Gabriel Cardona, Francesc Rosselló, Gabriel Valiente
2007	J	`jnl`	Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment. BMC Bioinform. Paolo Ferragina, Raffaele Giancarlo, Valentina Greco, Giovanni Manzini, Gabriel Valiente
2007	—	`ch.`	Efficient Algorithms on Trees and Graphs with Unique Node Labels. Applied Graph Theory in Computer Vision and Pattern Recognition Gabriel Valiente
2007	J	`jnl`	Linear structure of bipartite permutation graphs and the longest path problem. Inf. Process. Lett. Ryuhei Uehara, Gabriel Valiente
2007	J	`jnl`	Phylogenetic reconstruction from non-genomic data. Bioinform. José Carlos Clemente, Kenji Satou, Gabriel Valiente
2007	—	`conf`	Reconstructing Metabolic Pathways by Bidirectional Chemical Search. CMSB Liliana Félix, Francesc Rosselló, Gabriel Valiente
2007	C	`conf`	Seeded Tree Alignment and Planar Tanglegram Layout. WABI Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson
2007	J	`jnl`	Tripartitions do not always discriminate phylogenetic networks CoRR Gabriel Cardona, Francesc Rosselló, Gabriel Valiente
2006	J	`jnl`	An Algebraic View of the Relation between Largest Common Subtrees and Smallest Common Supertrees CoRR Francesc Rosselló, Gabriel Valiente
2006	J	`jnl`	An algebraic view of the relation between largest common subtrees and smallest common supertrees. Theor. Comput. Sci. Francesc Rosselló, Gabriel Valiente
2006	B	`ed.`	Combinatorial Pattern Matching, 17th Annual Symposium, CPM 2006, Barcelona, Spain, July 5-7, 2006, Proceedings CPM Moshe Lewenstein, Gabriel Valiente
2006	J	`jnl`	The transposition distance for phylogenetic trees CoRR Francesc Rosselló, Gabriel Valiente
2005	C	`conf`	A Fast Algorithmic Technique for Comparing Large Phylogenetic Trees. SPIRE Gabriel Valiente
2005	J	`jnl`	An edit script for taxonomic classifications. BMC Bioinform. Roderic D. M. Page, Gabriel Valiente
2005	J	`jnl`	Constrained tree inclusion. J. Discrete Algorithms Gabriel Valiente
2005	—	`conf`	Graph Transformation in Molecular Biology. Formal Methods in Software and Systems Modeling Francesc Rosselló, Gabriel Valiente
2005	J	`jnl`	On the Ancestral Compatibility of Two Phylogenetic Trees with Nested Taxa CoRR Mercè Llabrés, Jairo Rocha, Francesc Rosselló, Gabriel Valiente
2005	—	`conf`	Optimal Artificial Chemistries and Metabolic Pathways. ENC Liliana Félix, Gabriel Valiente, Francesc Rosselló
2004	B	`conf`	Analysis of Metabolic Pathways by Graph Transformation. ICGT Francesc Rosselló, Gabriel Valiente
2004	—	`conf`	Artificial Chemistries and Metabolic Pathways. Spanish Bioinformatics Conference Liliana Félix, Francesc Rosselló, Gabriel Valiente
2004	—	`conf`	Chemical Graphs, Chemical Reaction Graphs, and Chemical Graph Transformation. GraBaTs Francesc Rosselló, Gabriel Valiente
2004	—	`conf`	On Supertrees of Phylogenetic Trees. Spanish Bioinformatics Conference Mercè Llabrés, Francesc Rosselló, Gabriel Valiente
2004	—	`conf`	On the Algorithm of Berztiss for Tree Pattern Matching. ENC Gabriel Valiente
2004	—	`ed.`	Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, Spain, November 29-30, 2004 Spanish Bioinformatics Conference Xavier Messeguer, Gabriel Valiente
2004	J	`jnl`	Trading uninitialized space for time. Inf. Process. Lett. Gabriel Valiente
2003	B	`conf`	A New Simple Algorithm for the Maximum-Weight Independent Set Problem on Circle Graphs. ISAAC Gabriel Valiente
2003	B	`conf`	Constrained Tree Inclusion. CPM Gabriel Valiente
2002	—	`book`	Algorithms on Trees and Graphs Gabriel Valiente
2002	J	`jnl`	Constraint Satisfaction Algorithms for Graph Pattern Matching. Math. Struct. Comput. Sci. Javier Larrosa, Gabriel Valiente
2001	B	`conf`	A General Method for Graph Isomorphism. FCT Gabriel Valiente
2001	J	`jnl`	A graph distance metric combining maximum common subgraph and minimum common supergraph. Pattern Recognit. Lett. Mirtha-Lina Fernández, Gabriel Valiente
2001	C	`conf`	An Efficient Bottom-Up Distance between Trees. SPIRE Gabriel Valiente
2000	—	`conf`	A Relational View of Subgraph Isomorphism. RelMiCS Jordi Cortadella, Gabriel Valiente
2000	C	`conf`	An Image Similarity Measure Based on Graph Matching. SPIRE Ricardo A. Baeza-Yates, Gabriel Valiente
1999	J	`jnl`	Algebraic Transformation of Unary Partial Algebras II: Single-Pushout Approach. Theor. Comput. Sci. Peter Burmeister, Miquel Monserrat, Francesc Rosselló, Gabriel Valiente
1998	—	`conf`	Redundancy and Subsumption in High-Level Replacement Systems. TAGT Hans-Jörg Kreowski, Gabriel Valiente
1997	J	`jnl`	Algebraic Transformation of Unary Partial Algebras I: Double-Pushout Approach. Theor. Comput. Sci. Peter Burmeister, Francesc Rosselló, Joan Torrens, Gabriel Valiente
1995	—	`conf`	Hypergraph rewriting using conformisms. SEGRAGRA Miquel Monserrat, Francesc Rosselló, Joan Torrens, Gabriel Valiente
1994	—	`conf`	A Partial Algebras Approach to Graph Transformation. TAGT Ricardo Alberich, Peter Burmeister, Francesc Rosselló, Gabriel Valiente, Boleslaw Wojdylo
1993	C	`conf`	Input-Driven Control of Rule-Based Expert Systems. ISMIS Gabriel Valiente
1992	C	`conf`	On Knowledge Base Redundancy Under Uncertain Reasoning. IPMU Gabriel Valiente
1992	J	`jnl`	Using Layered Support Graphs for Verifying External Adequacy in Rule-Based Expert Systems. SIGART Bull. Gabriel Valiente
1991	J	`jnl`	On Being a Machine: A Review. AI Mag. Gabriel Valiente