G. Allan Johnson

58 papers B 3Journal 45Unranked 10

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	High-resolution diffusion magnetic resonance imaging and spatial-transcriptomic in developing mouse brain. NeuroImage Xinyue Han, Surendra Maharjan, Jie Chen, Yi Zhao, Yi Qi, Leonard E. White, G. Allan Johnson, Nian Wang
2022	J	`jnl`	Resolution and b value dependent structural connectome in ex vivo mouse brain. NeuroImage Stephanie Crater, Surendra Maharjan, Yi Qi, Qi Zhao, Gary P. Cofer, James C. Cook, G. Allan Johnson, Nian Wang
2021	J	`jnl`	A high-resolution interactive atlas of the human brainstem using magnetic resonance imaging. NeuroImage Syed M. Adil, Evan Calabrese, Lefko T. Charalambous, James J. Cook, Shervin Rahimpour, Ahmet Fatih Atik, Gary P. Cofer, Beth A. Parente, G. Allan Johnson, Shivanand P. Lad, Leonard E. White
2021	J	`jnl`	A multicontrast MR atlas of the Wistar rat brain. NeuroImage G. Allan Johnson, Rick Laoprasert, Robert J. Anderson, Gary P. Cofer, James J. Cook, Forrest Pratson, Leonard E. White
2020	J	`jnl`	Cytoarchitecture of the mouse brain by high resolution diffusion magnetic resonance imaging. NeuroImage Nian Wang, Leonard E. White, Yi Qi, Gary P. Cofer, G. Allan Johnson
2020	J	`jnl`	Variability and heritability of mouse brain structure: Microscopic MRI atlases and connectomes for diverse strains. NeuroImage Nian Wang, Robert J. Anderson, David G. Ashbrook, Vivek Gopalakrishnan, Youngser Park, Carey E. Priebe, Yi Qi, Rick Laoprasert, Joshua T. Vogelstein, Robert W. Williams, G. Allan Johnson
2019	J	`jnl`	Identifying Vulnerable Brain Networks in Mouse Models of Genetic Risk Factors for Late Onset Alzheimer's Disease. Frontiers Neuroinformatics Alexandra Badea, Wenlin Wu, Jordan Shuff, Michele Wang, Robert J. Anderson, Yi Qi, G. Allan Johnson, Joan G. Wilson, Serge Koudoro, Eleftherios Garyfallidis, Carol A. Colton, David B. Dunson
2019	J	`jnl`	Small Animal Multivariate Brain Analysis (SAMBA) - a High Throughput Pipeline with a Validation Framework. Neuroinformatics Robert J. Anderson, James J. Cook, Natalie A. Delpratt, John C. Nouls, Bin Gu, James O. McNamara, Brian B. Avants, G. Allan Johnson, Alexandra Badea
2019	J	`jnl`	Structural mapping with fiber tractography of the human cuneate fasciculus at microscopic resolution in cervical region. NeuroImage Ahmet Fatih Atik, Evan Calabrese, Robert Gramer, Syed M. Adil, Shervin Rahimpour, Promila Pagadala, G. Allan Johnson, Shivanand P. Lad
2017	J	`jnl`	An HPC Pipeline with Validation Framework for Small Animal Multivariate Brain Analysis (SAMBA). CoRR Robert J. Anderson, James J. Cook, Natalie A. Delpratt, John C. Nouls, Bin Gu, James O. McNamara, Brian B. Avants, G. Allan Johnson, Alexandra Badea
2016	B	`conf`	Image-processing pipelines: applications in magnetic resonance histology. Image Processing G. Allan Johnson, Robert J. Anderson, James J. Cook, Christopher Long, Alexandra Badea
2016	J	`jnl`	Imaging whole-brain cytoarchitecture of mouse with MRI-based quantitative susceptibility mapping. NeuroImage Hongjiang Wei, Luke Xie, Russell Dibb, Wei Li, Kyle Decker, Yuyao Zhang, G. Allan Johnson, Chunlei Liu
2015	J	`jnl`	A diffusion tensor MRI atlas of the postmortem rhesus macaque brain. NeuroImage Evan Calabrese, Alexandra Badea, Christopher L. Coe, Gabriele R. Lubach, Yundi Shi, Martin Andreas Styner, G. Allan Johnson
2015	J	`jnl`	Addendum to "Waxholm Space atlas of the Sprague Dawley rat brain" [NeuroImage 97 (2014) 374-386]. NeuroImage Eszter A. Papp, Trygve B. Leergaard, Evan Calabrese, G. Allan Johnson, Jan G. Bjaalie
2014	—	`conf`	Helical dual source cone-beam micro-CT. ISBI Samuel M. Johnston, G. Allan Johnson, Cristian T. Badea
2014	J	`jnl`	Prenatal alcohol exposure reduces magnetic susceptibility contrast and anisotropy in the white matter of mouse brains. NeuroImage Wei Cao, Wei Li, Hui Han, Shonagh K. O'Leary-Moore, Kathleen K. Sulik, G. Allan Johnson, Chunlei Liu
2014	J	`jnl`	Quantitative magnetic susceptibility of the developing mouse brain reveals microstructural changes in the white matter. NeuroImage Ioannis Argyridis, Wei Li, G. Allan Johnson, Chunlei Liu
2014	J	`jnl`	Waxholm Space atlas of the Sprague Dawley rat brain. NeuroImage Eszter A. Papp, Trygve B. Leergaard, Evan Calabrese, G. Allan Johnson, Jan G. Bjaalie
2013	J	`jnl`	A quantitative magnetic resonance histology atlas of postnatal rat brain development with regional estimates of growth and variability. NeuroImage Evan Calabrese, Alexandra Badea, Charles Watson, G. Allan Johnson
2013	J	`jnl`	An ontology-based segmentation scheme for tracking postnatal changes in the developing rodent brain with MRI. NeuroImage Evan Calabrese, G. Allan Johnson, Charles Watson
2013	B	`conf`	Constructing a 4D murine cardiac micro-CT atlas for automated segmentation and phenotyping applications. Image Processing Darin P. Clark, Alexandra Badea, G. Allan Johnson, Cristian T. Badea
2013	J	`jnl`	Diffusion tensor magnetic resonance histology reveals microstructural changes in the developing rat brain. NeuroImage Evan Calabrese, G. Allan Johnson
2012	J	`jnl`	3D fiber tractography with susceptibility tensor imaging. NeuroImage Chunlei Liu, Wei Li, Bing Wu, Yi Jiang, G. Allan Johnson
2012	J	`jnl`	A multidimensional magnetic resonance histology atlas of the Wistar rat brain. NeuroImage G. Allan Johnson, Evan Calabrese, Alexandra Badea, George Paxinos, Charles Watson
2012	B	`conf`	Denoising of 4D cardiac micro-CT data using median-centric bilateral filtration. Image Processing Darin P. Clark, G. Allan Johnson, Cristian T. Badea
2012	J	`jnl`	Morphological studies of the murine heart based on probabilistic and statistical atlases. Comput. Medical Imaging Graph. Dimitrios Perperidis, Elizabeth Bucholz, G. Allan Johnson, Christakis Constantinides
2012	J	`jnl`	Quantitative mouse brain phenotyping based on single and multispectral MR protocols. NeuroImage Alexandra Badea, Sally L. Gewalt, Brian B. Avants, James J. Cook, G. Allan Johnson
2011	J	`jnl`	Digital Atlasing and Standardization in the Mouse Brain. PLoS Comput. Biol. Michael Hawrylycz, Richard A. Baldock, Albert Burger, Tsutomu Hashikawa, G. Allan Johnson, Maryann E. Martone, Lydia Ng, Christopher Lau, Stephen D. Larson, Jonathan Nissanov, Luis Puelles, Seth Ruffins, Fons J. Verbeek, Ilya Zaslavsky, Jyl Boline
2011	J	`jnl`	High-field (9.4 T) MRI of brain dysmyelination by quantitative mapping of magnetic susceptibility. NeuroImage Chunlei Liu, Wei Li, G. Allan Johnson, Bing Wu
2011	J	`jnl`	Microscopic diffusion tensor atlas of the mouse brain. NeuroImage Yi Jiang, G. Allan Johnson
2011	J	`jnl`	Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain. NeuroImage Jelle Veraart, Trygve B. Leergaard, Bjørnar T. Antonsen, Wim Van Hecke, Ines Blockx, Ben Jeurissen, Yi Jiang, Annemie van der Linden, G. Allan Johnson, Marleen Verhoye, Jan Sijbers
2010	J	`jnl`	Microscopic diffusion tensor imaging of the mouse brain. NeuroImage Yi Jiang, G. Allan Johnson
2010	J	`jnl`	Remote sites of structural atrophy predict later amyloid formation in a mouse model of Alzheimer's disease. NeuroImage Alexandra Badea, G. Allan Johnson, Joanna L. Jankowsky
2010	—	`conf`	Static and dynamic cardiac modelling: initial strides and results towards a quantitatively accurate mechanical heart model. ISBI Christakis Constantinides, Nicolas Aristokleous, G. Allan Johnson, Dimitris Perperides
2010	J	`jnl`	Ultrasonic disruption of the blood-brain barrier enables in vivo functional mapping of the mouse barrel field cortex with manganese-enhanced MRI. NeuroImage Gabriel P. Howles, Yi Qi, G. Allan Johnson
2010	J	`jnl`	Waxholm Space: An image-based reference for coordinating mouse brain research. NeuroImage G. Allan Johnson, Alexandra Badea, Jeffrey Brandenburg, Gary P. Cofer, Boma Fubara, Song Liu, Jonathan Nissanov
2009	J	`jnl`	Genetic dissection of the mouse brain using high-field magnetic resonance microscopy. NeuroImage Alexandra Badea, G. Allan Johnson, Robert W. Williams
2009	J	`jnl`	Least-Square NUFFT Methods Applied to 2-D and 3-D Radially Encoded MR Image Reconstruction. IEEE Trans. Biomed. Eng. Jiayu Song, Yanhui Liu, Sally L. Gewalt, Gary P. Cofer, G. Allan Johnson, Qing Huo Liu
2009	J	`jnl`	Purkinje cell loss in experimental autoimmune encephalomyelitis. NeuroImage Allan MacKenzie-Graham, Seema K. Tiwari-Woodruff, Gaurav Sharma, Cynthia Aguilar, Kieumai T. Vo, Lauren V. Strickland, Laurie Morales, Boma Fubara, Melanie Martin, Russell E. Jacobs, G. Allan Johnson, Arthur W. Toga, Rhonda R. Voskuhl
2008	J	`jnl`	A High-Precision Contrast Injector for Small Animal X-Ray Digital Subtraction Angiography. IEEE Trans. Biomed. Eng. Ming De Lin, Lutao Ning, Cristian T. Badea, Nilesh Mistry, Yi Qi, G. Allan Johnson
2008	J	`jnl`	Automated segmentation of the actively stained mouse brain using multi-spectral MR microscopy. NeuroImage Anjum A. Sharief, Alexandra Badea, Anders M. Dale, G. Allan Johnson
2008	J	`jnl`	Left ventricle volume measurements in cardiac micro-CT: The impact of radiation dose and contrast agent. Comput. Medical Imaging Graph. Cristian T. Badea, Arthur W. Wetzel, Nilesh Mistry, Stuart M. Pomerantz, Démian Nave, G. Allan Johnson
2007	J	`jnl`	High-throughput morphologic phenotyping of the mouse brain with magnetic resonance histology. NeuroImage G. Allan Johnson, Anjum Ali-Sharief, Alexandra Badea, Jeffrey Brandenburg, Gary P. Cofer, Boma Fubara, Sally L. Gewalt, Laurence W. Hedlund, Lucy Upchurch
2007	J	`jnl`	Morphometric analysis of the C57BL/6J mouse brain. NeuroImage Alexandra Badea, A. A. Ali-Sharief, G. Allan Johnson
2007	J	`jnl`	Neuroanatomical phenotypes in the Reeler mouse. NeuroImage Alexandra Badea, Peter Nicholls, G. Allan Johnson, William C. Wetsel
2006	—	`conf`	Functional imaging in small animals using tomographic digital subtraction angiography. ISBI Cristian T. Badea, Laurence Hedlund, Ming De Lin, Julie F. Boslego, G. Allan Johnson
2006	—	`conf`	Micro radiography imaging of the rodent with phenylephrine induced vascular hypertension. ISBI Ming De Lin, Laurence Hedlund, G. Allan Johnson
2006	—	`conf`	Multimodality imaging of pulmonary function in the rodent. ISBI Nilesh Mistry, Ming De Lin, Laurence Hedlund, G. Allan Johnson
2005	J	`jnl`	Automated segmentation of neuroanatomical structures in multispectral MR microscopy of the mouse brain. NeuroImage Anjum A. Sharief, Anders M. Dale, Alexandra Badea, G. Allan Johnson
2005	J	`jnl`	Magnetic resonance imaging at microscopic resolution reveals subtle morphological changes in a mouse model of dopaminergic hyperfunction. NeuroImage Michel Cyr, Marc G. Caron, G. Allan Johnson, Aki Laakso
2004	—	`conf`	Effects of Breathing Motion On The Spatial Resolution In Microscopic Imaging Techniques of Rodents. ISBI Wilfried Mai, Cristian T. Badea, Charles Wheeler, Laurence Hedlund, G. Allan Johnson
2004	—	`conf`	Optimized Radiographic Spectra for Digital Subtraction Angiography in the Mouse. ISBI Ming De Lin, Cristian T. Badea, G. Allan Johnson
2004	—	`conf`	Volumetric Micro-CT System for In Vivo Microscopy. ISBI Cristian T. Badea, Laurence Hedlund, Charles Wheeler, Wilfried Mai, G. Allan Johnson
2002	—	`conf`	An engineering approach to image-based phenotyping. ISBI G. Allan Johnson, Gary P. Cofer, Sally L. Gewalt, Laurence Hedlund
2001	—	`conf`	Distributed Multiuser Visualization of Time Varying Anatomical Data. AIPR Arthur W. Wetzel, Stuart M. Pomerantz, Démian Nave, Walter Meixner, G. Allan Johnson
1998	J	`jnl`	Measuring the progression of foreign-body reaction to silicone implants using in vivo MR microscopy. IEEE Trans. Biomed. Eng. Hui H. Qiu, Laurence W. Hedlund, Michael R. Neuman, C. R. Edwards, Robert D. Black, Gary P. Cofer, G. Allan Johnson
1997	J	`jnl`	Automated feedback control of body temperature for small animal studies with MR microscopy. IEEE Trans. Biomed. Eng. Hui H. Qiu, Gary P. Cofer, Laurence W. Hedlund, G. Allan Johnson
1997	J	`jnl`	Optimized radiofrequency coils for increased signal-to-noise ratio in magnetic resonance microscopy. Int. J. Imaging Syst. Technol. S. E. Hurlston, Gary P. Cofer, G. Allan Johnson