Fusong Ju

22 papers A* 2A 1Journal 18Unranked 1
YearRankTypeTitle / Venue / Authors
2025 A conf
Matrix Is All You Need: Rearchitecting Quantum Chemistry to Scale on AI Accelerators.
SC
Haozhi Han, Kun Li, Fusong Ju, Qi Li, Hong An, Yifeng Chen, Yunquan Zhang, Ting Cao, Mao Yang
2024 J jnl
Author Correction: Predicting equilibrium distributions for molecular systems with deep learning.
Nat. Mac. Intell.
Shuxin Zheng, Jiyan He, Chang Liu, Yu Shi, Ziheng Lu, Weitao Feng, Fusong Ju, Jiaxi Wang, Jianwei Zhu, Yaosen Min, He Zhang, Shidi Tang, Hongxia Hao, Peiran Jin, Chi Chen, Frank Noé, Haiguang Liu, Tie-Yan Liu
2024 J jnl
Matryoshka: Optimization of Dynamic Diverse Quantum Chemistry Systems via Elastic Parallelism Transformation.
CoRR
Tuowei Wang, Kun Li, Donglin Bai, Fusong Ju, Leo Xia, Ting Cao, Ju Ren, Yaoxue Zhang, Mao Yang
2024 J jnl
Predicting equilibrium distributions for molecular systems with deep learning.
Nat. Mac. Intell.
Shuxin Zheng, Jiyan He, Chang Liu, Yu Shi, Ziheng Lu, Weitao Feng, Fusong Ju, Jiaxi Wang, Jianwei Zhu, Yaosen Min, He Zhang, Shidi Tang, Hongxia Hao, Peiran Jin, Chi Chen, Frank Noé, Haiguang Liu, Tie-Yan Liu
2023 J jnl
Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms.
Genom. Proteom. Bioinform.
Bin Huang, Lupeng Kong, Chao Wang, Fusong Ju, Qi Zhang, Jianwei Zhu, Tiansu Gong, Haicang Zhang, Chungong Yu, Wei-Mou Zheng, Dongbo Bu
2023 J jnl
SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances.
IEEE ACM Trans. Comput. Biol. Bioinform.
Tiansu Gong, Fusong Ju, Shiwei Sun, Dongbo Bu
2023 J jnl
Towards Predicting Equilibrium Distributions for Molecular Systems with Deep Learning.
CoRR
Shuxin Zheng, Jiyan He, Chang Liu, Yu Shi, Ziheng Lu, Weitao Feng, Fusong Ju, Jiaxi Wang, Jianwei Zhu, Yaosen Min, He Zhang, Shidi Tang, Hongxia Hao, Peiran Jin, Chi Chen, Frank Noé, Haiguang Liu, Tie-Yan Liu
2022 A* conf
Exploring evolution-aware & -free protein language models as protein function predictors.
NeurIPS
Mingyang Hu, Fajie Yuan, Kevin Yang, Fusong Ju, Jin Su, Hui Wang, Fei Yang, Qiuyang Ding
2022 J jnl
Exploring evolution-based & -free protein language models as protein function predictors.
CoRR
Mingyang Hu, Fajie Yuan, Kevin K. Yang, Fusong Ju, Jin Su, Hui Wang, Fei Yang, Qiuyang Ding
2022 J jnl
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs.
J. Comput. Biol.
Lupeng Kong, Fusong Ju, Wei-Mou Zheng, Jianwei Zhu, Shiwei Sun, Jinbo Xu, Dongbo Bu
2022 J jnl
Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction.
Bioinform.
Fusong Ju, Jianwei Zhu, Qi Zhang, Guozheng Wei, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2021 A* conf
Co-evolution Transformer for Protein Contact Prediction.
NeurIPS
He Zhang, Fusong Ju, Jianwei Zhu, Liang He, Bin Shao, Nanning Zheng, Tie-Yan Liu
2021 J jnl
FALCON2: a web server for high-quality prediction of protein tertiary structures.
BMC Bioinform.
Lupeng Kong, Fusong Ju, Haicang Zhang, Shiwei Sun, Dongbo Bu
2021 J jnl
Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph.
BMC Bioinform.
Bin Huang, Guozheng Wei, Bing Wang, Fusong Ju, Yi Zhong, Zhuozheng Shi, Shiwei Sun, Dongbo Bu
2021 J jnl
Pre-training Co-evolutionary Protein Representation via A Pairwise Masked Language Model.
CoRR
Liang He, Shizhuo Zhang, Lijun Wu, Huanhuan Xia, Fusong Ju, He Zhang, Siyuan Liu, Yingce Xia, Jianwei Zhu, Pan Deng, Bin Shao, Tao Qin, Tie-Yan Liu
2021 — conf
SASA-Net: A spatial-aware self-attention mechanism for building protein 3D structure directly from inter-residue distances.
BIBM
Tiansu Gong, Fusong Ju, Shiwei Sun, Dongbo Bu
2020 J jnl
ISSEC: inferring contacts among protein secondary structure elements using deep object detection.
BMC Bioinform.
Qi Zhang, Jianwei Zhu, Fusong Ju, Lupeng Kong, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2019 J jnl
Correction to: Predicting protein inter-residue contacts using composite likelihood maximization and deep learning.
BMC Bioinform.
Haicang Zhang, Qi Zhang, Fusong Ju, Jianwei Zhu, Yujuan Gao, Ziwei Xie, Minghua Deng, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2019 J jnl
De novo glycan structural identification from mass spectra using tree merging strategy.
Comput. Biol. Chem.
Fusong Ju, Jingwei Zhang, Dongbo Bu, Yan Li, Jinyu Zhou, Hui Wang, Yaojun Wang, Chuncui Huang, Shiwei Sun
2019 J jnl
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning.
BMC Bioinform.
Haicang Zhang, Qi Zhang, Fusong Ju, Jianwei Zhu, Yujuan Gao, Ziwei Xie, Minghua Deng, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2019 J jnl
Seq-SetNet: Exploring Sequence Sets for Inferring Structures.
CoRR
Fusong Ju, Jianwei Zhu, Guozheng Wei, Qi Zhang, Shiwei Sun, Dongbo Bu
2018 J jnl
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning.
CoRR
Haicang Zhang, Qi Zhang, Fusong Ju, Jianwei Zhu, Shiwei Sun, Yujuan Gao, Ziwei Xie, Minghua Deng, Wei-Mou Zheng, Dongbo Bu