Frédérique Lisacek

32 papers C 1Journal 24Unranked 6
YearRankTypeTitle / Venue / Authors
2024 J jnl
Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy.
Database J. Biol. Databases Curation
Karina Martinez, Jon Agirre, Yukie Akune, Kiyoko F. Aoki-Kinoshita, Cecilia N. Arighi, Kristian B. Axelsen, Evan Bolton, Emily Bordeleau, Nathan J. Edwards, Elisa Fadda, Ten Feizi, Catherine A. Hayes, Callum M. Ives, Hiren J. Joshi, Khakurel Krishna Prasad, Sofia Kossida, Frédérique Lisacek, Yan Liu, Thomas Lütteke, Junfeng Ma, Adnan Malik, Maria Jesus Martin, Akul Y. Mehta, Sriram Neelamegham, Kalpana Panneerselvam, René Ranzinger, Sylvie Ricard-Blum, Gaoussou Sanou, Vijay Shanker, Paul D. Thomas, Michael Tiemeyer, James Urban, Randi Vita, Jeet Vora, Yasunori Yamamoto, Raja Mazumder
2023 — conf
Linking glycan and protein data.
SWAT4HCLS
Catherine A. Hayes, Vincenzo Daponte, Frédérique Lisacek
2022 — conf
Glycan Semantic Model Applications in Substructure Search.
SWAT4HCLS
Vincenzo Daponte, Catherine A. Hayes, Julien Mariethoz, Frédérique Lisacek
2022 J jnl
This is GlycoQL.
Bioinform.
Catherine A. Hayes, Vincenzo Daponte, Julien Mariethoz, Frédérique Lisacek
2021 J jnl
Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users.
Nucleic Acids Res.
Severine Duvaud, Chiara Gabella, Frédérique Lisacek, Heinz Stockinger, Vassilios Ioannidis, Christine Durinx
2021 J jnl
LectomeXplore, an update of UniLectin for the discovery of carbohydrate-binding proteins based on a new lectin classification.
Nucleic Acids Res.
François Bonnardel, Julien Mariethoz, Serge Pérez, Anne Imberty, Frédérique Lisacek
2020 J jnl
Norine: update of the nonribosomal peptide resource.
Nucleic Acids Res.
Areski Flissi, Emma Ricart, Clémentine Campart, Mickael Chevalier, Yoann Dufresne, Juraj Michalik, Philippe Jacques, Christophe Flahaut, Frédérique Lisacek, Valérie Leclère, Maude Pupin
2019 — ch.
Proteome Informatics.
Encyclopedia of Bioinformatics and Computational Biology (2)
Frédérique Lisacek
2019 J jnl
UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands.
Nucleic Acids Res.
François Bonnardel, Julien Mariethoz, Sebastian Salentin, Xavier Robin, Michael Schroeder, Serge Pérez, Frédérique Lisacek, Anne Imberty
2019 J jnl
rBAN: retro-biosynthetic analysis of nonribosomal peptides.
J. Cheminformatics
Emma Ricart, Valérie Leclère, Areski Flissi, Markus Müller, Maude Pupin, Frédérique Lisacek
2016 J jnl
SugarBindDB, a resource of glycan-mediated host-pathogen interactions.
Nucleic Acids Res.
Julien Mariethoz, Khaled Khatib, Davide Alocci, Matthew P. Campbell, Niclas G. Karlsson, Nicolle H. Packer, Elaine H. Mullen, Frédérique Lisacek
2015 — conf
Glycan Pattern Search.
SWAT4LS
Davide Alocci, Julien Mariethoz, Frédérique Lisacek
2014 J jnl
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.
Nucleic Acids Res.
Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel
2014 J jnl
GlycoDigest: a tool for the targeted use of exoglycosidase digestions in glycan structure determination.
Bioinform.
Lou Götz, Jodie L. Abrahams, Julien Mariethoz, Pauline M. Rudd, Niclas G. Karlsson, Nicolle H. Packer, Matthew P. Campbell, Frédérique Lisacek
2014 J jnl
Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information.
BMC Bioinform.
Marco Masseroli, Barend Mons, Erik Bongcam-Rudloff, Stefano Ceri, Alexander E. Kel, François Rechenmann, Frédérique Lisacek, Paolo Romano
2014 J jnl
NETTAB 2012 on "Integrated Bio-Search".
BMC Bioinform.
Paolo Romano, Frédérique Lisacek, Marco Masseroli
2014 J jnl
Toolboxes for a standardised and systematic study of glycans.
BMC Bioinform.
Matthew P. Campbell, René Ranzinger, Thomas Lütteke, Julien Mariethoz, Catherine A. Hayes, Jingyu Zhang, Yukie Akune, Kiyoko F. Aoki-Kinoshita, David Damerell, Giorgio Carta, William S. York, Stuart M. Haslam, Hisashi Narimatsu, Pauline M. Rudd, Niclas G. Karlsson, Nicolle H. Packer, Frédérique Lisacek
2014 J jnl
UniCarbKB: building a knowledge platform for glycoproteomics.
Nucleic Acids Res.
Matthew P. Campbell, Robyn Peterson, Julien Mariethoz, Elisabeth Gasteiger, Yukie Akune, Kiyoko F. Aoki-Kinoshita, Frédérique Lisacek, Nicolle H. Packer
2012 J jnl
ConoDictor: a tool for prediction of conopeptide superfamilies.
Nucleic Acids Res.
Dominique Koua, Age Brauer, Silja Laht, Lauris Kaplinski, Philippe Favreau, Maido Remm, Frédérique Lisacek, Reto Stöcklin
2012 — conf
eBiomics - A Website Promoting Good Practices and Specific Methods for using Bioinformatics Resources.
BIOINFORMATICS
Frédérique Lisacek, Patrick Koks, Pascale Berthault, Grégoire Rossier, Guy Bottu, Jacques van Helden, Jean Sylvestre, Jean-Pierre Kraehenbuhl, Jack A. M. Leunissen
2011 J jnl
UniCarb-DB: a database resource for glycomic discovery.
Bioinform.
Catherine A. Hayes, Niclas G. Karlsson, Weston B. Struwe, Frédérique Lisacek, Pauline M. Rudd, Nicolle H. Packer, Matthew P. Campbell
2011 J jnl
pROC: an open-source package for R and S+ to analyze and compare ROC curves.
BMC Bioinform.
Xavier Robin, Natacha Turck, Alexandre Hainard, Natalia Tiberti, Frédérique Lisacek, Jean-Charles Sanchez, Markus Müller
2008 J jnl
swissPIT: a novel approach for pipelined analysis of mass spectrometry data.
Bioinform.
Andreas Quandt, Patricia Hernandez, Alexandre Masselot, Céline Hernandez, Sergio Maffioletti, Cesare Pautasso, Ron D. Appel, Frédérique Lisacek
2007 C conf
Extracting Sequential Nuggets of Knowledge.
DEXA
Christine Froidevaux, Frédérique Lisacek, Bastien Rance
2006 J jnl
Using argumentation to retrieve articles with similar citations: An inquiry into improving related articles search in the MEDLINE digital library.
Int. J. Medical Informatics
Imad Tbahriti, Christine Chichester, Frédérique Lisacek, Patrick Ruch
2005 — conf
Extracting Key Sentences with Latent Argumentative Structuring.
MIE
Patrick Ruch, Robert H. Baud, Christine Chichester, Antoine Geissbühler, Frédérique Lisacek, Johan Marty, Dietrich Rebholz-Schuhmann, Imad Tbahriti, Anne-Lise Veuthey
2004 — conf
Using Argumentation to Retrieve Articles with Similar Citations from MEDLINE.
NLPBA/BioNLP
Imad Tbahriti, Christine Chichester, Frédérique Lisacek, Patrick Ruch
2003 J jnl
Consistency checks for characterizing protein forms.
Comput. Biol. Chem.
Christine Chichester, Frédéric Nikitin, Jean-Christophe Ravarini, Frédérique Lisacek
2003 J jnl
Investigating protein domain combinations in complete proteomes.
Comput. Biol. Chem.
Frédéric Nikitin, Frédérique Lisacek
2002 J jnl
Probabilistic alignment of motifs with sequences.
Bioinform.
Pedro Gonnet, Frédérique Lisacek
2000 J jnl
Algorithms on Strings, Trees and Sequences: Dan Gusfield.
Comput. Chem.
Frédérique Lisacek
1999 J jnl
A Multi-agent System Simulating Human Splice Site Recognition.
Comput. Chem.
Laurence Vignal, Frédérique Lisacek, Joël Quinqueton, Yves D'Aubenton-Carafa, Claude Thermes