Frederick P. Roth

27 papers Misc 1Journal 23Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
Pacybara: accurate long-read sequencing for barcoded mutagenized allelic libraries.
Bioinform.
Jochen Weile, Gabrielle Ferra, Gabriel Boyle, Sriram Pendyala, Clara J. Amorosi, Chiann-Ling C. Yeh, Atina G. Coté, Nishka Kishore, Daniel Tabet, Warren van Loggerenberg, Ashyad Rayhan, Douglas M. Fowler, Maitreya J. Dunham, Frederick P. Roth
2021 J jnl
MaveRegistry: a collaboration platform for multiplexed assays of variant effect.
Bioinform.
Da Kuang, Jochen Weile, Nishka Kishore, Maria Nguyen, Alan F. Rubin, Stanley Fields, Douglas M. Fowler, Frederick P. Roth
2021 J jnl
Prioritizing genes for systematic variant effect mapping.
Bioinform.
Da Kuang, Rebecca Truty, Jochen Weile, Britt Johnson, Keith Nykamp, Carlos Araya, Robert L. Nussbaum, Frederick P. Roth
2020 J jnl
A reference map of the human binary protein interactome.
Nat.
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoît Charloteaux, Dong-Sic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon-gang Choi, Claudia Colabella, Georges Coppin, Cassandra D'Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Tasan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
2020 J jnl
MaveQuest: a web resource for planning experimental tests of human variant effects.
Bioinform.
Da Kuang, Jochen Weile, Roujia Li, Tom W. Ouellette, Jarry A. Barber, Frederick P. Roth
2019 J jnl
A web application and service for imputing and visualizing missense variant effect maps.
Bioinform.
Yingzhou Wu, Jochen Weile, Atina G. Coté, Song Sun, Jennifer J. Knapp, Marta Verby, Frederick P. Roth
2017 J jnl
Systematic identification of phosphorylation-mediated protein interaction switches.
PLoS Comput. Biol.
Matthew J. Betts, Oliver Wichmann, Mathias Utz, Timon Andre, Evangelia Petsalaki, Pablo Minguez, Luca Parca, Frederick P. Roth, Anne-Claude Gavin, Peer Bork, Robert B. Russell
2015 J jnl
Protein Domain-Level Landscape of Cancer-Type-Specific Somatic Mutations.
PLoS Comput. Biol.
Fan Yang, Evangelia Petsalaki, Thomas Rolland, David E. Hill, Marc Vidal, Frederick P. Roth
2015 J jnl
SELPHI: correlation-based identification of kinase-associated networks from global phospho-proteomics data sets.
Nucleic Acids Res.
Evangelia Petsalaki, Andreas O. Helbig, Anjali Gopal, Adrian Pasculescu, Frederick P. Roth, Tony Pawson
2014 J jnl
Target-Independent Prediction of Drug Synergies Using Only Drug Lipophilicity.
J. Chem. Inf. Model.
Kaan Yilancioglu, Zohar B. Weinstein, Cem Meydan, Azat Akhmetov, Isil Toprak, Arda Durmaz, Ivan Iossifov, Hilal Kazan, Frederick P. Roth, Murat Cokol
2013 J jnl
ChromoZoom: a flexible, fluid, web-based genome browser.
Bioinform.
Theodore R. Pak, Frederick P. Roth
2012 Misc conf
Session introduction.
Pacific Symposium on Biocomputing
Oliver Stegle, Frederick P. Roth, Quaid Morris, Jennifer Listgarten
2012 J jnl
Viral Perturbations of Host Networks Reflect Disease Etiology.
PLoS Comput. Biol.
Natali Gulbahce, Han Yan, Amélie Dricot, Megha Padi, Danielle Byrdsong, Rachel Franchi, Deok-Sun Lee, Orit Rozenblatt-Rosen, Jessica Cara Mar, Michael A. Calderwood, Amy Baldwin, Bo Zhao, Balaji Santhanam, Pascal Braun, Nicolas Simonis, Kyung-Won Huh, Karin Hellner, Miranda Grace, Alyce Chen, Renee Rubio, Jarrod A. Marto, Nicholas A. Christakis, Elliott Kieff, Frederick P. Roth, Jennifer Roecklein-Canfield, James A. DeCaprio, Michael E. Cusick, John Quackenbush, David E. Hill, Karl Münger, Marc Vidal, Albert-László Barabási
2010 J jnl
FuncBase : a resource for quantitative gene function annotation.
Bioinform.
John E. Beaver, Murat Tasan, Francis D. Gibbons, Weidong Tian, Timothy R. Hughes, Frederick P. Roth
2010 J jnl
Interpreting Metabolomic Profiles using Unbiased Pathway Models.
PLoS Comput. Biol.
Rahul C. Deo, Luke Hunter, Gregory D. Lewis, Guillaume Pare, Ramachandran S. Vasan, Daniel Chasman, Thomas J. Wang, Robert E. Gerszten, Frederick P. Roth
2009 — ch.
Biomolecular Network Structure and Function.
Encyclopedia of Complexity and Systems Science
Lan V. Zhang, Frederick P. Roth
2009 J jnl
Next generation software for functional trend analysis.
Bioinform.
Gabriel F. Berriz, John E. Beaver, Can Cenik, Murat Tasan, Frederick P. Roth
2008 J jnl
Chemical substructures that enrich for biological activity.
Bioinform.
Justin Klekota, Frederick P. Roth
2008 J jnl
The Synergizer service for translating gene, protein and other biological identifiers.
Bioinform.
Gabriel F. Berriz, Frederick P. Roth
2006 — conf
Probabilistic Paths for Protein Complex Inference.
Systems Biology and Computational Proteomics
Hailiang Huang, Lan V. Zhang, Frederick P. Roth, Joel S. Bader
2006 J jnl
Query Chem: a Google-powered web search combining text and chemical structures.
Bioinform.
Justin Klekota, Frederick P. Roth, Stuart L. Schreiber
2006 J jnl
Using High-Throughput Screening Data To Discriminate Compounds with Single-Target Effects from Those with Side Effects.
J. Chem. Inf. Model.
Justin Klekota, Erik Brauner, Frederick P. Roth, Stuart L. Schreiber
2004 J jnl
Predicting co-complexed protein pairs using genomic and proteomic data integration.
BMC Bioinform.
Lan V. Zhang, Sharyl L. Wong, Oliver D. King, Frederick P. Roth
2004 J jnl
Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura.
Bioinform.
Yonatan H. Grad, Frederick P. Roth, Marc S. Halfon, George M. Church
2003 J jnl
Characterizing gene sets with FuncAssociate.
Bioinform.
Gabriel F. Berriz, Oliver D. King, Barbara Bryant, Chris Sander, Frederick P. Roth
2003 J jnl
GoFish finds genes with combinations of Gene Ontology attributes.
Bioinform.
Gabriel F. Berriz, James V. White, Oliver D. King, Frederick P. Roth
2003 — conf
Predicting phenotype from patterns of annotation.
ISMB (Supplement of Bioinformatics)
Oliver D. King, Jeffrey C. Lee, Aimée M. Dudley, Daniel M. Janse, George M. Church, Frederick P. Roth