François Coste

31 papers C 2Misc 1Journal 14Unranked 12

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	FUSE-PhyloTree: linking functions and sequence conservation modules of a protein family through phylogenomic analysis. Bioinform. Olivier Dennler, Elisa Chenel, François Coste, Samuel Blanquart, Catherine Belleannée, Nathalie Théret
2023	—	`ed.`	International Conference on Grammatical Inference, ICGI 2023, 10-13 July 2023, Rabat, Morocco. ICGI François Coste, Faissal Ouardi, Guillaume Rabusseau
2023	J	`jnl`	Phylogenetic inference of the emergence of sequence modules and protein-protein interactions in the ADAMTS-TSL family. PLoS Comput. Biol. Olivier Dennler, François Coste, Samuel Blanquart, Catherine Belleannée, Nathalie Théret
2023	J	`jnl`	Predicting enzymatic function of protein sequences with attention. Bioinform. Nicolas Buton, François Coste, Yann Le Cunff
2021	J	`jnl`	PPalign: optimal alignment of Potts models representing proteins with direct coupling information. BMC Bioinform. Hugo Talibart, François Coste
2019	J	`jnl`	Deep learning languages: a key fundamental shift from probabilities to weights? CoRR François Coste
2018	J	`jnl`	Estimating probabilistic context-free grammars for proteins using contact map constraints. CoRR Witold Dyrka, François Coste, Juliette Talibart
2018	—	`conf`	How to measure the topological quality of protein parse trees? ICGI Mateusz Pyzik, François Coste, Witold Dyrka
2018	—	`conf`	Learning local substitutable context-free languages from positive examples in polynomial time and data by reduction. ICGI François Coste, Jacques Nicolas
2016	J	`jnl`	How to measure the topological quality of protein grammars? CoRR Witold Dyrka, François Coste, Olgierd Unold, Lukasz Culer, Agnieszka Kaczmarek
2016	J	`jnl`	VIRALpro: a tool to identify viral capsid and tail sequences. Bioinform. Clovis Galiez, Christophe N. Magnan, François Coste, Pierre Baldi
2015	J	`jnl`	Amplitude spectrum distance: measuring the global shape divergence of protein fragments. BMC Bioinform. Clovis Galiez, François Coste
2014	—	`conf`	A bottom-up efficient algorithm learning substitutable languages from positive examples. ICGI François Coste, Gaëlle Garet, Jacques Nicolas
2014	C	`conf`	Automated Enzyme Classification by Formal Concept Analysis. ICFCA François Coste, Gaëlle Garet, Agnès Groisillier, Jacques Nicolas, Thierry Tonon
2013	J	`jnl`	CyanoLyase: a database of phycobilin lyase sequences, motifs and functions. Nucleic Acids Res. Anthony Bretaudeau, François Coste, Florian Humily, Laurence Garczarek, Gildas Le Corguillé, Christophe Six, Morgane Ratin, Olivier Collin, Wendy M. Schluchter, Frédéric Partensky
2012	—	`conf`	Locally Substitutable Languages for Enhanced Inductive Leaps. ICGI François Coste, Gaëlle Garet, Jacques Nicolas
2012	J	`jnl`	Searching for smallest grammars on large sequences and application to DNA. J. Discrete Algorithms Rafael Carrascosa, François Coste, Matthias Gallé, Gabriel G. Infante López
2011	J	`jnl`	The Smallest Grammar Problem as Constituents Choice and Minimal Grammar Parsing. Algorithms Rafael Carrascosa, François Coste, Matthias Gallé, Gabriel G. Infante López
2010	C	`conf`	Choosing Word Occurrences for the Smallest Grammar Problem. LATA Rafael Carrascosa, François Coste, Matthias Gallé, Gabriel G. Infante López
2009	J	`jnl`	In-Place Update of Suffix Array while Recoding Words. Int. J. Found. Comput. Sci. Matthias Gallé, Pierre Peterlongo, François Coste
2008	—	`ed.`	Grammatical Inference: Algorithms and Applications, 9th International Colloquium, ICGI 2008, Saint-Malo, France, September 22-24, 2008, Proceedings ICGI Alexander Clark, François Coste, Laurent Miclet
2008	Misc	`conf`	In-place Update of Suffix Array while Recoding Words. PSC Matthias Gallé, Pierre Peterlongo, François Coste
2005	—	`conf`	A Similar Fragments Merging Approach to Learn Automata on Proteins. ECML François Coste, Goulven Kerbellec
2005	J	`jnl`	Progressing the state-of-the-art in grammatical inference by competition: The Omphalos Context-Free Language Learning Competition. AI Commun. Bradford Starkie, François Coste, Menno van Zaanen
2004	—	`conf`	Introducing Domain and Typing Bias in Automata Inference. ICGI François Coste, Daniel Fredouille, Christopher Kermorvant, Colin de la Higuera
2004	—	`conf`	Mutually Compatible and Incompatible Merges for the Search of the Smallest Consistent DFA. ICGI John Abela, François Coste, Sandro Spina
2004	—	`conf`	The Omphalos Context-Free Grammar Learning Competition. ICGI Bradford Starkie, François Coste, Menno van Zaanen
2003	—	`conf`	Unambiguous Automata Inference by Means of State-Merging Methods. ECML François Coste, Daniel Fredouille
2000	—	`conf`	Efficient Ambiguity Detection in C-NFA, a Step Towards the Inference on Non Deterministic Automata. ICGI François Coste, Daniel Fredouille
1998	—	`conf`	How Considering Incompatible State Mergings May Reduce the DFA Induction Search Tree. ICGI François Coste, Jacques Nicolas
1998	—	`conf`	Inference of Finite Automata: Reducing the Search Space with an Ordering of Pairs of States. ECML François Coste, Jacques Nicolas