Frank Oliver Glöckner

30 papers Journal 25Unranked 5
YearRankTypeTitle / Venue / Authors
2023 — conf
Connecting National and International Data Infrastructures in Biodiversity Research The Case of NFDI4Biodiversity, a German Consortium for Biodiversity, Ecology and Environmental Data.
CoRDI
Barbara Ebert, Judith Sophie Engel, Ivaylo Kostadinov, Anton Güntsch, Frank Oliver Glöckner
2023 — conf
Towards a Research Data Commons in the German National Research Data Infrastructure NFDI: Vision, Governance, Architecture.
CoRDI
Michael Diepenbroek, Ivaylo Kostadinov, Bernhard Seeger, Frank Oliver Glöckner, Marius A. Dieckmann, Alexander Goesmann, Barbara Ebert, Sonja Schimmler, York Sure-Vetter
2021 J jnl
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases.
Briefings Bioinform.
Gerhard Mayer, Wolfgang Müller, Karin Schork, Julian Uszkoreit, Andreas Weidemann, Ulrike Wittig, Maja Rey, Christian Quast, Janine Felden, Frank Oliver Glöckner, Matthias Lange, Daniel Arend, Sebastian Beier, Astrid Junker, Uwe Scholz, Danuta Schüler, Hans A. Kestler, Daniel Wibberg, Alfred Pühler, Sven Twardziok, Jürgen Eils, Roland Eils, Steve Hoffmann, Martin Eisenacher, Michael Turewicz
2021 J jnl
Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR.
F1000Research
Robert M. Waterhouse, Anne-Françoise Adam-Blondon, Donat Agosti, Petr Baldrian, Bachir Balech, Erwan Le Corre, Robert P. Davey, Henrik Lantz, Graziano Pesole, Christian Quast, Frank Oliver Glöckner, Niels Raes, Anna Sandionigi, Monica Santamaria, Wouter Addink, Jiri Vohradsky, Amandine Nunes-Jorge, Nils Peder Willassen, Jerry Lanfear
2020 J jnl
An open-source GIS-enabled lookup service for Nagoya Protocol party information.
Database J. Biol. Databases Curation
Hendrikje Seifert, Marc Weber, Frank Oliver Glöckner, Ivaylo Kostadinov
2020 J jnl
The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences.
Bioinform.
Rachel Drysdale, Charles E. Cook, Robert Petryszak, Vivienne Baillie Gerritsen, Mary Barlow, Elisabeth Gasteiger, Franziska Gruhl, Jürgen Haas, Jerry Lanfear, Rodrigo Lopez, Nicole Redaschi, Heinz Stockinger, Daniel Teixeira, Aravind Venkatesan, Alex Bateman, Alan J. Bridge, Guy Cochrane, Robert D. Finn, Frank Oliver Glöckner, Marc Hanauer, Thomas M. Keane, Andrew Leach, Luana Licata, Per Oksvold, Sandra E. Orchard, Christine A. Orengo, Helen E. Parkinson, Bengt Persson, Pablo Porras, Jordi Rambla, Ana Rath, Charlotte Rodwell, Ugis Sarkans, Dietmar Schomburg, Ian Sillitoe, J. Dylan Spalding, Mathias Uhlén, Sameer Velankar, Juan Antonio Vizcaíno, Kalle von Feilitzen, Christian von Mering, Andrew D. Yates, Niklas Blomberg, Christine Durinx, Johanna R. McEntyre
2019 J jnl
A generally applicable lightweight method for calculating a value structure for tools and services in bioinformatics infrastructure projects.
Briefings Bioinform.
Gerhard Mayer, Christian Quast, Janine Felden, Matthias Lange, Manuel Prinz, Alfred Pühler, Chris Lawerenz, Uwe Scholz, Frank Oliver Glöckner, Wolfgang Müller, Katrin Marcus, Martin Eisenacher
2019 J jnl
Fast and accurate average genome size and 16S rRNA gene average copy number computation in metagenomic data.
BMC Bioinform.
Emiliano Pereira-Flores, Frank Oliver Glöckner, Antonio Fernandez-Guerra
2019 J jnl
Meta-omics data and collection objects (MOD-CO): a conceptual schema and data model for processing sample data in meta-omics research.
Database J. Biol. Databases Curation
Gerhard Rambold, Pelin Yilmaz, Janno Harjes, Sabrina Klaster, Veronica Sanz, Anton Link, Frank Oliver Glöckner, Dagmar Triebel
2019 J jnl
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications.
Nucleic Acids Res.
R. Henrik Nilsson, Karl-Henrik Larsson, Andy F. S. Taylor, Johan Bengtsson-Palme, Thomas S. Jeppesen, Dmitry Schigel, Peter Kennedy, Kathryn Picard, Frank Oliver Glöckner, Leho Tedersoo, Irja Saar, Urmas Kõljalg, Kessy Abarenkov
2019 J jnl
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR.
F1000Research
Daniel Wibberg, Bérénice Batut, Peter Belmann, Jochen Blom, Frank Oliver Glöckner, Björn A. Grüning, Nils Hoffmann, Nils Kleinbölting, René Rahn, Maja Rey, Uwe Scholz, Malvika Sharan, Andreas Tauch, Ulrike Trojahn, Björn Usadel, Oliver Kohlbacher
2017 J jnl
SILVA tree viewer: interactive web browsing of the SILVA phylogenetic guide trees.
BMC Bioinform.
Alan Beccati, Jan Gerken, Christian Quast, Pelin Yilmaz, Frank Oliver Glöckner
2016 J jnl
JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison.
Bioinform.
Michael Richter, Ramon Rosselló-Mora, Frank Oliver Glöckner, Jörg Peplies
2014 J jnl
The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks.
Nucleic Acids Res.
Pelin Yilmaz, Laura Wegener Parfrey, Pablo Yarza, Jan Gerken, Elmar Pruesse, Christian Quast, Timmy Schweer, Jörg Peplies, Wolfgang Ludwig, Frank Oliver Glöckner
2014 — conf
Towards an Integrated Biodiversity and Ecological Research Data Management and Archiving Platform: The German Federation for the Curation of Biological Data (GFBio).
GI-Jahrestagung
Michael Diepenbroek, Frank Oliver Glöckner, Peter Grobe, Anton Güntsch, Robert Huber, Birgitta König-Ries, Ivaylo Kostadinov, Jens Nieschulze, Bernhard Seeger, Robert Tolksdorf, Dagmar Triebel
2013 — conf
Dinucleotide distance histograms for fast detection of rRNA in metatranscriptomic sequences.
GCB
Heiner Klingenberg, Robin Martinjak, Frank Oliver Glöckner, Rolf Daniel, Thomas Lingner, Peter Meinicke
2013 J jnl
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.
Nucleic Acids Res.
Christian Quast, Elmar Pruesse, Pelin Yilmaz, Jan Gerken, Timmy Schweer, Pablo Yarza, Jörg Peplies, Frank Oliver Glöckner
2012 J jnl
Current opportunities and challenges in microbial metagenome analysis - a bioinformatic perspective.
Briefings Bioinform.
Hanno Teeling, Frank Oliver Glöckner
2012 J jnl
Poseidon: An information retrieval and extraction system for metagenomic marine science.
Ecol. Informatics
Marcin Radom, Agnieszka Rybarczyk, Renzo Kottmann, Piotr Formanowicz, Marta Szachniuk, Frank Oliver Glöckner, Dietrich Rebholz-Schuhmann, Jacek Blazewicz
2012 J jnl
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes.
Bioinform.
Elmar Pruesse, Jörg Peplies, Frank Oliver Glöckner
2010 — conf
Applying graph theoretic approaches to microbial metagenomes: ecological perspectives on function.
BCB
Wolfgang Hankeln, Pier Luigi Buttigieg, Ivaylo Kostadinov, Renzo Kottmann, Pelin Yilmaz, Melissa Beth Duhaime, Frank Oliver Glöckner
2010 J jnl
Megx.net: integrated database resource for marine ecological genomics.
Nucleic Acids Res.
Renzo Kottmann, Ivaylo Kostadinov, Melissa Beth Duhaime, Pier Luigi Buttigieg, Pelin Yilmaz, Wolfgang Hankeln, Jost Waldmann, Frank Oliver Glöckner
2010 J jnl
MetaBar - a tool for consistent contextual data acquisition and standards compliant submission.
BMC Bioinform.
Wolfgang Hankeln, Pier Luigi Buttigieg, Dennis Fink, Renzo Kottmann, Pelin Yilmaz, Frank Oliver Glöckner
2008 J jnl
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes.
BMC Bioinform.
Michael Richter, Thierry Lombardot, Ivaylo Kostadinov, Renzo Kottmann, Melissa Beth Duhaime, Jörg Peplies, Frank Oliver Glöckner
2008 J jnl
MetaMine - A tool to detect and analyse gene patterns in their environmental context.
BMC Bioinform.
Uta Bohnebeck, Thierry Lombardot, Renzo Kottmann, Frank Oliver Glöckner
2007 J jnl
MetaLook: a 3D visualisation software for marine ecological genomics.
BMC Bioinform.
Thierry Lombardot, Renzo Kottmann, Gregory Giuliani, Andrea de Bono, Nans Addor, Frank Oliver Glöckner
2006 J jnl
Megx.net - database resources for marine ecological genomics.
Nucleic Acids Res.
Thierry Lombardot, Renzo Kottmann, Hauke Pfeffer, Michael Richter, Hanno Teeling, Christian Quast, Frank Oliver Glöckner
2006 J jnl
RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits.
BMC Bioinform.
Hanno Teeling, Frank Oliver Glöckner
2005 J jnl
Graphical representation of ribosomal RNA probe accessibility data using ARB software package.
BMC Bioinform.
Yadhu Kumar, Ralf Westram, Sebastian Behrens, Bernhard Fuchs, Frank Oliver Glöckner, Rudolf Amann, Harald Meier, Wolfgang Ludwig
2004 J jnl
TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences.
BMC Bioinform.
Hanno Teeling, Jost Waldmann, Thierry Lombardot, Margarete Bauer, Frank Oliver Glöckner