Frank J. Bruggeman

17 papers B 1Journal 15Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
Is distance from equilibrium a good indicator for a reaction's flux control?
Biosyst.
David D. van Niekerk, Erik Rust, Frank J. Bruggeman, Hans V. Westerhoff, Jacky L. Snoep
2023 J jnl
Whole-cell metabolic control analysis.
Biosyst.
Frank J. Bruggeman, Maaike Remeijer, Maarten Droste, Luis Salinas, Meike T. Wortel, Robert Planqué, Herbert M. Sauro, Bas Teusink, Hans V. Westerhoff
2021 J jnl
Unlocking Elementary Conversion Modes: ecmtool Unveils All Capabilities of Metabolic Networks.
Patterns
Tom J. Clement, Erik B. Baalhuis, Bas Teusink, Frank J. Bruggeman, Robert Planqué, Daan H. de Groot
2020 J jnl
Elementary Growth Modes provide a molecular description of cellular self-fabrication.
PLoS Comput. Biol.
Daan H. de Groot, Josephus Hulshof, Bas Teusink, Frank J. Bruggeman, Robert Planqué
2020 J jnl
The Fundamental Equations of Change in Statistical Ensembles and Biological Populations.
Entropy
Steven A. Frank, Frank J. Bruggeman
2020 J jnl
The fundamental equations of change in statistical ensembles and biological populations.
CoRR
Steven A. Frank, Frank J. Bruggeman
2019 J jnl
The number of active metabolic pathways is bounded by the number of cellular constraints at maximal metabolic rates.
PLoS Comput. Biol.
Daan H. de Groot, Coco van Boxtel, Robert Planqué, Frank J. Bruggeman, Bas Teusink
2018 J jnl
Maintaining maximal metabolic flux by gene expression control.
PLoS Comput. Biol.
Robert Planqué, Josephus Hulshof, Bas Teusink, Johannes C. Hendriks, Frank J. Bruggeman
2018 J jnl
Metabolic enzyme cost explains variable trade-offs between microbial growth rate and yield.
PLoS Comput. Biol.
Meike T. Wortel, Elad Noor, Michael Ferris, Frank J. Bruggeman, Wolfram Liebermeister
2015 J jnl
Fast Flux Module Detection Using Matroid Theory.
J. Comput. Biol.
Arne C. Reimers, Frank J. Bruggeman, Brett G. Olivier, Leen Stougie
2015 J jnl
Interplay between Constraints, Objectives, and Optimality for Genome-Scale Stoichiometric Models.
PLoS Comput. Biol.
Timo R. Maarleveld, Meike T. Wortel, Brett G. Olivier, Bas Teusink, Frank J. Bruggeman
2015 J jnl
Multiplex Eukaryotic Transcription (In)activation: Timing, Bursting and Cycling of a Ratchet Clock Mechanism.
PLoS Comput. Biol.
Katja N. Rybakova, Frank J. Bruggeman, Aleksandra Tomaszewska, Martijn J. Moné, Carsten Carlberg, Hans V. Westerhoff
2014 B conf
Fast Flux Module Detection Using Matroid Theory.
RECOMB
Arne C. Müller, Frank J. Bruggeman, Brett G. Olivier, Leen Stougie
2011 J jnl
Formal Methods in Molecular Biology (Dagstuhl Seminar 11151).
Dagstuhl Reports
Rainer Breitling, Frank J. Bruggeman, Corrado Priami, Adelinde M. Uhrmacher
2011 — conf
ITFoM - The IT Future of Medicine.
FET
Hans Lehrach, Ralf Sudbrak, Peter Boyle, Markus Pasterk, Kurt Zatloukal, Heimo Müller, Tim Hubbard, Angela Brand, Mark A. Girolami, Daniel Jameson, Frank J. Bruggeman, Hans V. Westerhoff
2009 J jnl
Noise Management by Molecular Networks.
PLoS Comput. Biol.
Frank J. Bruggeman, Nils Blüthgen, Hans V. Westerhoff
2005 J jnl
Emergence and Its Place in Nature: A Case Study of Biochemical Networks.
Synth.
Fred C. Boogerd, Frank J. Bruggeman, Robert C. Richardson, A. Stephan, Hans V. Westerhoff