Francois Berenger

17 papers A* 1Journal 16
YearRankTypeTitle / Venue / Authors
2025 J jnl
An ANI-2 enabled open-source protocol to estimate ligand strain after docking.
J. Comput. Chem.
Francois Berenger, Koji Tsuda
2024 J jnl
CACHE Challenge #1: Targeting the WDR Domain of LRRK2, A Parkinson's Disease Associated Protein.
J. Chem. Inf. Model.
Fengling Li, Suzanne Ackloo, Cheryl H. Arrowsmith, Fuqiang Ban, Christopher J. Barden, Hartmut Beck, Jan Beránek, Francois Berenger, Albina Bolotokova, Guillaume Bret, Marko Breznik, Emanuele Carosati, Irene Chau, Yu Chen, Artem Cherkasov, Dennis Della Corte, Katrin Denzinger, Aiping Dong, Sorin Draga, Ian Dunn, Kristina Edfeldt, Aled M. Edwards, Merveille K. I. Eguida, Paul Eisenhuth, Lukas Friedrich, Alexander Fuerll, Spencer S. Gardiner, Francesco Gentile, Pegah Ghiabi, Elisa Gibson, Marta Glavatskikh, Christoph Gorgulla, Judith Guenther, Anders Gunnarsson, Filipp Gusev, Evgeny Gutkin, Levon Halabelian, Rachel J. Harding, Alexander Hillisch, Laurent Hoffer, Anders Hogner, Scott Houliston, John J. Irwin, Olexandr Isayev, Aleksandra Ivanova, Célien Jacquemard, Austin J. Jarrett, Jan H. Jensen, Dmitri Kireev, Julian Kleber, S. Benjamin Koby, David Koes, Ashutosh Kumar, Maria G. Kurnikova, Alina Kutlushina, Uta F. Lessel, Fabian Liessmann, Sijie Liu, Wei Lu, Jens Meiler, Akhila Mettu, Guzel Minibaeva, Rocco Moretti, Connor J. Morris, Chamali Narangoda, Theresa Noonan, Leon Obendorf, Szymon Pach, Amit Pandit, Sumera Perveen, Gennady Poda, Pavel G. Polishchuk, Kristina Puls, Vera Pütter, Didier Rognan, Dylan Roskams-Edris, Christina E. M. Schindler, François Sindt, Vojtech Spiwok, Casper Steinmann, Rick L. Stevens, Valerij Talagayev, Damon Tingey, Oanh Vu, W. Patrick Walters, Xiaowen Wang, Zhenyu Wang, Gerhard Wolber, Clemens Alexander Wolf, Lars Wortmann, Hong Zeng, Carlos A. Zepeda, Kam Y. J. Zhang, Jixian Zhang, Shuangjia Zheng, Matthieu Schapira
2023 J jnl
3D-Sensitive Encoding of Pharmacophore Features.
J. Chem. Inf. Model.
Francois Berenger, Koji Tsuda
2021 J jnl
Lean-Docking: Exploiting Ligands' Predicted Docking Scores to Accelerate Molecular Docking.
J. Chem. Inf. Model.
Francois Berenger, Ashutosh Kumar, Kam Y. J. Zhang, Yoshihiro Yamanishi
2021 J jnl
Molecular generation by Fast Assembly of (Deep)SMILES fragments.
J. Cheminformatics
Francois Berenger, Koji Tsuda
2020 J jnl
Ranking Molecules with Vanishing Kernels and a Single Parameter: Active Applicability Domain Included.
J. Chem. Inf. Model.
Francois Berenger, Yoshihiro Yamanishi
2019 J jnl
A Distance-Based Boolean Applicability Domain for Classification of High Throughput Screening Data.
J. Chem. Inf. Model.
Francois Berenger, Yoshihiro Yamanishi
2019 J jnl
Chemoinformatics and structural bioinformatics in OCaml.
J. Cheminformatics
Francois Berenger, Kam Y. J. Zhang, Yoshihiro Yamanishi
2019 J jnl
Predicting drug-induced transcriptome responses of a wide range of human cell lines by a novel tensor-train decomposition algorithm.
Bioinform.
Michio Iwata, Longhao Yuan, Qibin Zhao, Yasuo Tabei, Francois Berenger, Ryusuke Sawada, Sayaka Akiyoshi, Momoko Hamano, Yoshihiro Yamanishi
2017 J jnl
Consensus queries in ligand-based virtual screening experiments.
J. Cheminformatics
Francois Berenger, Oanh Vu, Jens Meiler
2017 J jnl
Fragger: a protein fragment picker for structural queries.
F1000Research
Francois Berenger, David Simoncini, Arnout R. D. Voet, Rojan Shrestha, Kam Y. J. Zhang
2017 A* conf
Semantic-directed clumping of disjunctive abstract states.
POPL
Huisong Li, Francois Berenger, Bor-Yuh Evan Chang, Xavier Rival
2014 J jnl
A rotation-translation invariant molecular descriptor of partial charges and its use in ligand-based virtual screening.
J. Cheminformatics
Francois Berenger, Arnout R. D. Voet, Xiao Yin Lee, Kam Y. J. Zhang
2014 J jnl
Combining in silico and in cerebro approaches for virtual screening and pose prediction in SAMPL4.
J. Comput. Aided Mol. Des.
Arnout R. D. Voet, Ashutosh Kumar, Francois Berenger, Kam Y. J. Zhang
2012 J jnl
Durandal: Fast exact clustering of protein decoys.
J. Comput. Chem.
Francois Berenger, Rojan Shrestha, Yong Zhou, David Simoncini, Kam Y. J. Zhang
2011 J jnl
Entropy-accelerated exact clustering of protein decoys.
Bioinform.
Francois Berenger, Yong Zhou, Rojan Shrestha, Kam Y. J. Zhang
2010 J jnl
PAR: a PARallel and distributed job crusher.
Bioinform.
Francois Berenger, Camille Coti, Kam Y. J. Zhang