Francesco Pappalardo

127 papers A 1B 1C 4Misc 1Journal 56Unranked 62

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	A Comparative Evaluation of Diffusion Based Networks for Multiple Sclerosis Lesion Segmentation. ICIAP (Workshops 1) Alessia Rondinella, Francesco Guarnera, Alessandro Ortis, Elena Crispino, Giulia Russo, Francesco Pappalardo, Sebastiano Battiato
2025	J	`jnl`	Advancing in Silico Clinical Trials for Regulatory Adoption and Innovation. IEEE J. Biomed. Health Informatics Georgia S. Karanasiou, Elazer Edelman, François-Henri Boissel, Robert Byrne, Luca Emili, Martin Fawdry, Nenad Filipovic, David Flynn, Liesbet Geris, Alfons G. Hoekstra, Maria Cristina Jori, Ali Kiapour, Dejan Krsmanovic, Thierry Marchal, Flora Musuamba, Francesco Pappalardo, Lorenza Petrini, Markus Reiterer, Marco Viceconti, Klaus Zeier, Lampros K. Michalis, Dimitrios I. Fotiadis
2025	J	`jnl`	Advancing the frontier of rare disease modeling: a critical appraisal of in silico technologies. npj Digit. Medicine Francesca Pistollato, Fabia Furtmann, Lindsay J. Marshall, Surat Parvatam, Jan Turner, Flora Musuamba Tshinanu, Giulia Russo, Francesco Pappalardo
2025	J	`jnl`	Consensus statement on the credibility assessment of ML predictors. CoRR Alessandra Aldieri, Thiranja Prasad Babarenda Gamage, Antonino Amedeo La Mattina, Yi Li, Axel Loewe, Francesco Pappalardo, Marco Viceconti
2025	J	`jnl`	Consensus statement on the credibility assessment of machine learning predictors. Briefings Bioinform. Alessandra Aldieri, Thiranja Prasad Babarenda Gamage, Antonino Amedeo La Mattina, Axel Loewe, Francesco Pappalardo, Marco Viceconti
2024	—	`conf`	A Head-to-Head Evaluation of a Novel Universal Influenza Vaccine Against Current Formulation: Implications for Future Immunization Strategies. BIBM Valentina Di Salvatore, Elena Crispino, Avisa Maleki, Giulia Russo, Francesco Pappalardo
2024	—	`conf`	Agent-Based Modeling of Cutaneous Lupus Erythematosus: Exploring Keratinocyte-Driven Mechanisms. BIBM Abdul Wahab, Giulia Russo, Francesco Pappalardo
2024	—	`conf`	Application of PBK models for long-chain PFAS to short-chain PFAS: a proposal for toxicokinetic evaluation and in vitro to in vivo extrapolation. BIBM Martina Iulini, Giulia Russo, Elena Crispino, Emanuela Corsini, Francesco Pappalardo, Alicia Paini
2024	—	`conf`	Breaking the Cycle: Advancements in Universal Influenza Vaccine Design. MetroXRAINE Valentina Di Salvatore, Elena Crispino, Giulia Russo, Francesco Pappalardo
2024	—	`conf`	ICPR 2024 Competition on Multiple Sclerosis Lesion Segmentation - Methods and Results. ICPR (34) Alessia Rondinella, Francesco Guarnera, Elena Crispino, Giulia Russo, Clara Di Lorenzo, Davide Maimone, Francesco Pappalardo, Sebastiano Battiato
2024	J	`jnl`	ICPR 2024 Competition on Multiple Sclerosis Lesion Segmentation - Methods and Results. CoRR Alessia Rondinella, Francesco Guarnera, Elena Crispino, Giulia Russo, Clara Di Lorenzo, Davide Maimone, Francesco Pappalardo, Sebastiano Battiato
2024	J	`jnl`	Pioneering bioinformatics with agent-based modelling: an innovative protocol to accurately forecast skin or respiratory allergic reactions to chemical sensitizers. Briefings Bioinform. Giulia Russo, Elena Crispino, Silvia Casati, Emanuela Corsini, Andrew Worth, Francesco Pappalardo
2024	—	`conf`	Predicting Skin Sensitizer Potency and Immune Response Using UISS-TOX: A Novel Approach for Assessing Allergenic Potential. BIBM Elena Crispino, Giulia Russo, Elisabetta Arcidiacono, Silvia Casati, Emanuela Corsini, Andrew Worth, Francesco Pappalardo
2024	—	`conf`	Unintended Risks of mRNA COVID-19 Vaccines: A UISS Simulation Study on Immune and Organ Health. BIBM Valentina Di Salvatore, Giulia Russo, Francesco Pappalardo
2023	J	`jnl`	Beyond the state of the art of reverse vaccinology: predicting vaccine efficacy with the universal immune system simulator for influenza. BMC Bioinform. Giulia Russo, Elena Crispino, Avisa Maleki, Valentina Di Salvatore, Filippo Stanco, Francesco Pappalardo
2023	J	`jnl`	Boosting multiple sclerosis lesion segmentation through attention mechanism. Comput. Biol. Medicine Alessia Rondinella, Elena Crispino, Francesco Guarnera, Oliver Giudice, Alessandro Ortis, Giulia Russo, Clara Di Lorenzo, Davide Maimone, Francesco Pappalardo, Sebastiano Battiato
2023	—	`conf`	Enhancing Multiple Sclerosis Lesion Segmentation in Multimodal MRI Scans with Diffusion Models. BIBM Alessia Rondinella, Francesco Guarnera, Oliver Giudice, Alessandro Ortis, Giulia Russo, Elena Crispino, Francesco Pappalardo, Sebastiano Battiato
2023	—	`conf`	Genetic Algorithm-Based Prediction of Emerging SARS-CoV-2 Variants: A Computational Biology Perspective. BIBM Avisa Maleki, Alvaro Ras-Carmona, Elena Crispino, Valentina Di Salvatore, Giulia Russo, Pedro A. Reche, Francesco Pappalardo
2023	—	`conf`	Machine Learning techniques application to predict the quality of life degree in breast cancer patients. BIBM Valentina Di Salvatore, Giuseppe Catanuto, Giulia Russo, Francesco Pappalardo
2023	—	`conf`	Modeling Cutaneous Leishmaniasis: Insights into M1/M2 Macrophage Dynamics Using the Universal Immune System Simulator. BIBM Elena Crispino, Giulia Russo, Maria Adelaida Gomez, Francesco Pappalardo, Avisa Maleki, Valentina Di Salvatore
2023	—	`conf`	Modeling and Simulation of anakinra effects on severe COVID19 Patients. BIBM William Cavallaro, Marzio Pennisi, Evdoxia Kyriazopoulou, Giulia Russo, Maria Cristina Jori, Evangelos J. Giamarellos-Bourboulis, Francesco Pappalardo
2023	—	`conf`	Predictive Modelling of Allergic Responses to Chemical Sensitizers: Distinguishing Skin and Respiratory Reactions. BIBM Elena Crispino, Emanuela Corsini, Giulia Russo, Andrew Worth, Silvia Casati, Francesco Pappalardo
2023	—	`conf`	Universal Immune System Simulator Analysis: The Impact of the Variable Approach Technique® on Enhancing Immune Defense Against infectious diseases. BIBM Giuseppe Cultrera, Agnese Maccarrone, Giulia Russo, Francesco Pappalardo
2022	J	`jnl`	A multi-step and multi-scale bioinformatic protocol to investigate potential SARS-CoV-2 vaccine targets. Briefings Bioinform. Giulia Russo, Valentina Di Salvatore, Giuseppe Sgroi, Giuseppe Alessandro Parasiliti Palumbo, Pedro A. Reche, Francesco Pappalardo
2022	—	`conf`	Cutaneous Leishmaniasis: discovering new effective therapies using the Universal Immune System Simulator. BIBM Nandu Chandran Nair, Elena Crispino, Avisa Maleki, Valentina Di Salvatore, Giulia Russo, Maria Adelaida Gomez, Francesco Pappalardo
2022	—	`conf`	Genetic algorithm application for the prediction of potential SARS-CoV-2 new variant of concern. BIBM Avisa Maleki, Alvaro Ras-Carmona, Valentina Di Salvatore, Giulia Russo, Elena Crispino, Francesco Pappalardo
2022	J	`jnl`	In silico clinical trials for relapsing-remitting multiple sclerosis with MS TreatSim. BMC Medical Informatics Decis. Mak. Fianne L. P. Sips, Francesco Pappalardo, Giulia Russo, Roberta Bursi
2022	J	`jnl`	Toward A Regulatory Pathway for the Use of in Silico Trials in the CE Marking of Medical Devices. IEEE J. Biomed. Health Informatics Francesco Pappalardo, John Wilkinson, Francois Busquet, Antoine Bril, Mark Palmer, Kenneth B. Walker, Cristina Curreli, Giulia Russo, Thierry Marchal, Elena Toschi, Rossana Alessandrello, Vincenzo Costignola, Ingrid Klingmann, Martina Contin, Bernard Staumont, Matthias Woiczinski, Christian Kaddick, Valentina Di Salvatore, Alessandra Aldieri, Liesbet Geris, Marco Viceconti
2022	—	`conf`	UISS-GPU: Accelerated In-Silico Tuberculosis Vaccine Trials Using FLAME GPU. BIBM Paul Richmond, Matthew Leach, Peter Heywood, Francesco Pappalardo, Giulia Russo, Marzio Pennisi
2021	—	`conf`	A multi-step and multi-scale bioinformatic approach to investigate potential source of cross-reactive immunity against SARS-CoV-2 UK variant. BIBM Valentina Di Salvatore, Avisa Maleki, Giulia Russo, Giuseppe Sgroi, Giuseppe Alessandro Parasiliti Palumbo, Francesco Pappalardo
2021	J	`jnl`	Evaluation of word embedding models to extract and predict surgical data in breast cancer. BMC Bioinform. Giuseppe Sgroi, Giulia Russo, Anna Maglia, Giuseppe Catanuto, Peter Barry, Andreas Karakatsanis, Nicola Rocco, Francesco Pappalardo
2021	—	`conf`	How molecular packets improve cell-to-cell communication. NANOCOM Francesco Pappalardo, Nunzio Iraci, Loredana Leggio, Alessandro Lombardo, Giacomo Morabito
2021	J	`jnl`	In silico design of recombinant multi-epitope vaccine against influenza A virus. BMC Bioinform. Avisa Maleki, Giulia Russo, Giuseppe Alessandro Parasiliti Palumbo, Francesco Pappalardo
2021	J	`jnl`	Model verification tools: a computational framework for verification assessment of mechanistic agent-based models. BMC Bioinform. Giulia Russo, Giuseppe Alessandro Parasiliti Palumbo, Marzio Pennisi, Francesco Pappalardo
2021	—	`conf`	PEAK: A Clever Python Tool for Exploratory, Regression, and Classification Data. A Case Study for COVID-19. BIOMESIP Giuseppe Sgroi, Giuseppe Alessandro Parasiliti Palumbo, Valentina Di Salvatore, Giulia Russo, Francesco Pappalardo
2021	J	`jnl`	PETAL: a Python tool for deep analysis of biological pathways. Bioinform. Giuseppe Sgroi, Giulia Russo, Francesco Pappalardo
2021	J	`jnl`	Possible Contexts of Use for In Silico Trials Methodologies: A Consensus-Based Review. IEEE J. Biomed. Health Informatics Marco Viceconti, Luca Emili, Payman Afshari, Eulalie Courcelles, Cristina Curreli, Nele Famaey, Liesbet Geris, Marc Horner, Maria Cristina Jori, Alexander Kulesza, Axel Loewe, Michael Neidlin, Markus Reiterer, Cecile F. Rousseau, Giulia Russo, Simon J. Sonntag, Emmanuelle M. Voisin, Francesco Pappalardo
2021	—	`conf`	Uncertainty quantification and sensitivity analysis for in silico trial platform: a preliminary application on UISS-MS. BIBM Giuseppe Alessandro Parasiliti Palumbo, Avisa Maleki, Serena Anna Italia, Giulia Russo, Francesco Pappalardo
2020	J	`jnl`	Computational modeling of the immune response in multiple sclerosis using epimod framework. BMC Bioinform. Simone Pernice, Laura Follia, Alessandro Maglione, Marzio Pennisi, Francesco Pappalardo, Francesco Novelli, Marinella Clerico, Marco Beccuti, Francesca Cordero, Simona Rolla
2020	J	`jnl`	Credibility of In Silico Trial Technologies - A Theoretical Framing. IEEE J. Biomed. Health Informatics Marco Viceconti, Miguel A. Juárez, Cristina Curreli, Marzio Pennisi, Giulia Russo, Francesco Pappalardo
2020	—	`conf`	Evaluation of the predictive capability of PETAL tool: a retrospective study on potential tyrosine kinases drug resistance targets. BIBM Giuseppe Sgroi, Marzio Pennisi, Giulia Russo, Francesco Pappalardo, Giuseppe Alessandro Parasiliti Palumbo
2020	J	`jnl`	Generation of digital patients for the simulation of tuberculosis with UISS-TB. BMC Bioinform. Miguel A. Juárez, Marzio Pennisi, Giulia Russo, Dimitrios Kiagias, Cristina Curreli, Marco Viceconti, Francesco Pappalardo
2020	J	`jnl`	In Silico Trial to test COVID-19 candidate vaccines: a case study with UISS platform. CoRR Giulia Russo, Marzio Pennisi, Marco Viceconti, Francesco Pappalardo
2020	J	`jnl`	In silico trial to test COVID-19 candidate vaccines: a case study with UISS platform. BMC Bioinform. Giulia Russo, Marzio Pennisi, Epifanio Fichera, Santo Motta, Giuseppina Raciti, Marco Viceconti, Francesco Pappalardo
2020	—	`conf`	Modeling, simulation and prediction of protein structures for the design of oncolytic viruses. BIBM Valentina Di Salvatore, Daniela Formica, Giulia Russo, Viviana Giannino, Francesco Pappalardo
2020	J	`jnl`	Moving forward through the in silico modeling of tuberculosis: a further step with UISS-TB. BMC Bioinform. Giulia Russo, Giuseppe Sgroi, Giuseppe Alessandro Parasiliti Palumbo, Marzio Pennisi, Miguel A. Juárez, Pere-Joan Cardona, Santo Motta, Kenneth B. Walker, Epifanio Fichera, Marco Viceconti, Francesco Pappalardo
2020	J	`jnl`	Multiple Sclerosis disease: a computational approach for investigating its drug interactions. CoRR Simone Pernice, Marco Beccuti, Greta Romano, Marzio Pennisi, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Lorenzo Capra, Giuliana Franceschinis, Massimiliano De Pierro, Gianfranco Balbo, Francesca Cordero, Raffaele A. Calogero
2020	J	`jnl`	Toward computational modelling on immune system function. BMC Bioinform. Francesco Pappalardo, Giulia Russo, Pedro A. Reche
2020	—	`conf`	Verify: a toolbox for deterministic verification of computational models. BIBM Giuseppe Alessandro Parasiliti Palumbo, Giulia Russo, Giuseppe Sgroi, Marco Viceconti, Marzio Pennisi, Cristina Curreli, Francesco Pappalardo
2019	C	`conf`	A MapReduce Based Tool for the Analysis and Discovery of Novel Therapeutic Targets. PDP Giuseppe Parasiliti, Marzio Pennisi, Pietro Biondi, Giuseppe Sgroi, Giulia Russo, Christian Napoli, Francesco Pappalardo
2019	—	`conf`	A MapReduce tool for in-depth analysis of KEGG pathways: identification and visualization of therapeutic target candidates. BIBM Giuseppe Alessandro Parasiliti Palumbo, Pietro Biondi, Giuseppe Sgroi, Marzio Pennisi, Giulia Russo, Francesco Pappalardo
2019	J	`jnl`	A computational approach based on the colored Petri net formalism for studying multiple sclerosis. BMC Bioinform. Simone Pernice, Marzio Pennisi, Greta Romano, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Gianfranco Balbo, Marco Beccuti, Francesca Cordero, Raffaele A. Calogero
2019	—	`ch.`	Computational Immunogenetics. Encyclopedia of Bioinformatics and Computational Biology (2) Marta Gomez-Perosanz, Giulia Russo, Jose Luis Sanchez-Trincado Lopez, Marzio Pennisi, Pedro A. Reche, Adrian J. Shepherd, Francesco Pappalardo
2019	J	`jnl`	Computational modeling reveals MAP3K8 as mediator of resistance to vemurafenib in thyroid cancer stem cells. Bioinform. Fiorenza Gianì, Giulia Russo, Marzio Pennisi, Laura Sciacca, Francesco Frasca, Francesco Pappalardo
2019	J	`jnl`	EpiMethEx: a tool for large-scale integrated analysis in methylation hotspots linked to genetic regulation. BMC Bioinform. Saverio Candido, Giuseppe Alessandro Parasiliti Palumbo, Marzio Pennisi, Giulia Russo, Giuseppe Sgroi, Valentina Di Salvatore, Massimo Libra, Francesco Pappalardo
2019	—	`conf`	Evaluation of the efficacy of RUTI and ID93/GLA-SE vaccines in tuberculosis treatment: in silico trial through UISS-TB simulator. BIBM Giulia Russo, Francesco Pappalardo, Miguel A. Juárez, Marzio Pennisi, Pere-Joan Cardona, Rhea Coler, Epifanio Fichera, Marco Viceconti
2019	—	`conf`	Exploiting Stochastic Petri Net formalism to capture the Relapsing Remitting Multiple Sclerosis variability under Daclizumab administration. BIBM Simone Pernice, Greta Romano, Giulia Russo, Marco Beccuti, Marzio Pennisi, Francesco Pappalardo
2019	—	`conf`	Gene expression and pathway bioinformatics analysis detect a potential predictive value of MAP3K8 in thyroid cancer progression. BIBM Valentina Di Salvatore, Fiorenza Gianì, Giulia Russo, Marzio Pennisi, Pasqualino Malandrino, Francesco Frasca, Francesco Pappalardo
2019	J	`jnl`	Gene expression and pathway bioinformatics analysis detect a potential predictive value of MAP3K8 in thyroid cancer progression. CoRR Valentina Di Salvatore, Fiorenza Gianì, Giulia Russo, Marzio Pennisi, Pasqualino Malandrino, Francesco Frasca, Francesco Pappalardo
2019	—	`conf`	Generation of digital patients for the simulation of tuberculosis with UISS-TB. BIBM Marzio Pennisi, Miguel A. Juárez, Giulia Russo, Marco Viceconti, Francesco Pappalardo
2019	J	`jnl`	Generation of digital patients for the simulation of tuberculosis with UISS-TB. CoRR Marzio Pennisi, Miguel A. Juárez, Giulia Russo, Marco Viceconti, Francesco Pappalardo
2019	—	`conf`	In Silico Evaluation of Daclizumab and Vitamin D Effects in Multiple Sclerosis Using Agent Based Models. CIBB Marzio Pennisi, Giulia Russo, Giuseppe Sgroi, Giuseppe Alessandro Parasiliti Palumbo, Francesco Pappalardo
2019	J	`jnl`	In silico clinical trials: concepts and early adoptions. Briefings Bioinform. Francesco Pappalardo, Giulia Russo, Flora Musuamba Tshinanu, Marco Viceconti
2019	—	`conf`	Multiple Sclerosis Disease: A Computational Approach for Investigating Its Drug Interactions. CIBB Simone Pernice, Marco Beccuti, Greta Romano, Marzio Pennisi, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Lorenzo Capra, Giuliana Franceschinis, Massimiliano De Pierro, Gianfranco Balbo, Francesca Cordero, Raffaele A. Calogero
2019	J	`jnl`	POSITION PAPER: Credibility of In Silico Trial Technologies: A Theoretical Framing. CoRR Marco Viceconti, Miguel A. Juárez, Cristina Curreli, Marzio Pennisi, Giulia Russo, Francesco Pappalardo
2019	J	`jnl`	Parallelisation strategies for agent based simulation of immune systems. BMC Bioinform. Mozhgan Kabiri Chimeh, Peter Heywood, Marzio Pennisi, Francesco Pappalardo, Paul Richmond
2019	J	`jnl`	Predicting the artificial immunity induced by RUTI® vaccine against tuberculosis using universal immune system simulator (UISS). BMC Bioinform. Marzio Pennisi, Giulia Russo, Giuseppe Sgroi, Angela Bonaccorso, Giuseppe Alessandro Parasiliti Palumbo, Epifanio Fichera, Dipendra Kumar Mitra, Kenneth B. Walker, Pere-Joan Cardona, Merce Amat, Marco Viceconti, Francesco Pappalardo
2019	J	`jnl`	Toward computational modelling on immune system function. BMC Bioinform. Francesco Pappalardo, Marzio Pennisi, Pedro A. Reche, Giulia Russo
2018	—	`conf`	Agent based modeling of relapsing multiple sclerosis: a possible approach to predict treatment outcome. BIBM Francesco Pappalardo, Giulia Russo, Marzio Pennisi, Giuseppe Sgroi, Giuseppe Alessandro Parasiliti Palumbo, Santo Motta, Davide Maimone, Ferdinando Chiacchio
2018	—	`conf`	An agent based modeling approach for the analysis of tuberculosis - immune system dynamics. BIBM Francesco Pappalardo, Giulia Russo, Marzio Pennisi, Giuseppe Sgroi, Giuseppe Alessandro Parasiliti Palumbo, Santo Motta, Epifanio Fichera
2018	—	`conf`	BIOESOnet: A Tool for the Generation of Personalized Human Metabolic Pathways from 23andMe Exome Data. ICIC (2) Marzio Pennisi, Gabriele Forzano, Giulia Russo, Barbara Tomasello, Marco Favetta, Marcella Renis, Francesco Pappalardo
2018	C	`conf`	Combining Parallel Genetic Algorithms and Machine Learning to Improve the Research of Optimal Vaccination Protocols. PDP Marzio Pennisi, Giulia Russo, Francesco Pappalardo
2018	J	`jnl`	Computational modeling of brain pathologies: the case of multiple sclerosis. Briefings Bioinform. Francesco Pappalardo, Abdul Mateen Rajput, Santo Motta
2018	J	`jnl`	Continuous Petri Nets and microRNA Analysis in Melanoma. IEEE ACM Trans. Comput. Biol. Bioinform. Giulia Russo, Marzio Pennisi, Roberta Boscarino, Francesco Pappalardo
2018	—	`conf`	Efficient and Settings-Free Calibration of Detailed Kinetic Metabolic Models with Enzyme Isoforms Characterization. CIBB Niccoló Totis, Andrea Tangherloni, Marco Beccuti, Paolo Cazzaniga, Marco S. Nobile, Daniela Besozzi, Marzio Pennisi, Francesco Pappalardo
2018	—	`conf`	Estimating Daclizumab effects in Multiple Sclerosis using Stochastic Symmetric Nets. BIBM Simone Pernice, Marco Beccuti, Pietro Do', Marzio Pennisi, Francesco Pappalardo
2018	—	`conf`	GPU Accelerated Analysis of Treg-Teff Cross Regulation in Relapsing-Remitting Multiple Sclerosis. Euro-Par Workshops Marco Beccuti, Paolo Cazzaniga, Marzio Pennisi, Daniela Besozzi, Marco S. Nobile, Simone Pernice, Giulia Russo, Andrea Tangherloni, Francesco Pappalardo
2018	—	`conf`	Parallel Pair-Wise Interaction for Multi-Agent Immune Systems Modelling. BIBM Mozhgan K. Chimeh, Peter Heywood, Marzio Pennisi, Francesco Pappalardo, Paul Richmond
2017	—	`conf`	2DIs: A SBML Compliant Web Platform for the Design and Modeling of Immune System Interactions. ICIC (2) Marzio Pennisi, Giulia Russo, Giuseppe Sgroi, Giuseppe Parasiliti, Francesco Pappalardo
2017	J	`jnl`	Combining agent based-models and virtual screening techniques to predict the best citrus-derived vaccine adjuvants against human papilloma virus. BMC Bioinform. Marzio Pennisi, Giulia Russo, Silvia Ravalli, Francesco Pappalardo
2017	—	`conf`	Introducing scale factor adjustments on agent-based simulations of the immune system. BIBM Juan A. Sanchez-Lantaron, Pedro A. Reche, Marzio Pennisi, Giulia Russo, Francesco Pappalardo
2017	—	`conf`	Modeling PI3K/PDK1/Akt and MAPK Signaling Pathways Using Continuous Petri Nets. ICIC (2) Giulia Russo, Marzio Pennisi, Roberta Boscarino, Francesco Pappalardo
2017	—	`conf`	Optimization and analisys of vaccination schedules using simulated annealing and agent based models. BIBM Marzio Pennisi, Juan A. Sanchez-Lantaron, Pedro A. Reche, Giulia Russo, Francesco Pappalardo
2016	J	`jnl`	A computational model to predict the immune system activation by citrus-derived vaccine adjuvants. Bioinform. Francesco Pappalardo, Epifanio Fichera, Nicoletta Paparone, Alessandro Lombardo, Marzio Pennisi, Giulia Russo, Marco Leotta, Alessandro Pedretti, Francesco De Fiore, Santo Motta
2016	J	`jnl`	A methodological approach for using high-level Petri Nets to model the immune system response. BMC Bioinform. Marzio Pennisi, Salvatore Cavalieri, Santo Motta, Francesco Pappalardo
2016	J	`jnl`	SHyFTA, a Stochastic Hybrid Fault Tree Automaton for the modelling and simulation of dynamic reliability problems. Expert Syst. Appl. Ferdinando Chiacchio, Diego D'Urso, Lucio Compagno, Marzio Pennisi, Francesco Pappalardo, Gabriele Manno
2015	J	`jnl`	Computational modeling of the expansion of human cord blood CD133 Bioinform. Francesca Gullo, Mark van der Garde, Giulia Russo, Marzio Pennisi, Santo Motta, Francesco Pappalardo, Suzanne Watt
2015	—	`conf`	Targeting the Minimum Vertex Set Problem with an Enhanced Genetic Algorithm Improved with Local Search Strategies. ICIC (1) Vincenzo Cutello, Francesco Pappalardo
2014	J	`jnl`	Induction of T-cell memory by a dendritic cell vaccine: a computational model. Bioinform. Francesco Pappalardo, Marzio Pennisi, Alessia Ricupito, Francesco Topputo, Matteo Bellone
2014	—	`conf`	OntoFast: Construct Ontology Rapidly. KESW Abdul Mateen Rajput, Marzio Pennisi, Santo Motta, Francesco Pappalardo
2014	—	`conf`	Relapsing-remitting multiple scleroris and the role of vitamin D: an agent based model. BCB Francesco Pappalardo, Marzio Pennisi, Abdul Mateen Rajput, Ferdinando Chiacchio, Santo Motta
2013	J	`jnl`	Agent based modeling of Treg-Teff cross regulation in relapsing-remitting multiple sclerosis. BMC Bioinform. Marzio Pennisi, Abdul Mateen Rajput, Luca Toldo, Francesco Pappalardo
2013	C	`conf`	Computational Biology Modeling across Different Scales. SIMULTECH Filippo Castiglione, Francesco Pappalardo
2013	J	`jnl`	Mathematical modeling of biological systems. Briefings Bioinform. Santo Motta, Francesco Pappalardo
2013	—	`conf`	iAtheroSim: atherosclerosis process simulator on smart devices. BCB Francesco Pappalardo, Marzio Pennisi, Ferdinando Chiacchio, Salvatore Musumeci, Santo Motta
2012	J	`jnl`	Immune System Modeling and Related Pathologies. Comput. Math. Methods Medicine Francesco Pappalardo, Vladimir Brusic, Holger Fröhlich
2012	J	`jnl`	Mathematical modeling of the immune system recognition to mammary carcinoma antigen. BMC Bioinform. Carlo Bianca, Ferdinando Chiacchio, Francesco Pappalardo, Marzio Pennisi
2012	Misc	`conf`	Modeling Cancer Vaccines. CISIS Francesco Pappalardo, Santo Motta
2012	J	`jnl`	Optimal vaccination schedule search using genetic algorithm over MPI technology. BMC Medical Informatics Decis. Mak. Cristiano Calonaci, Ferdinando Chiacchio, Francesco Pappalardo
2011	—	`conf`	Predicting Long-Term Vaccine Efficacy against Metastases Using Agents. ICIC (3) Marzio Pennisi, Dario Motta, Alessandro Cincotti, Francesco Pappalardo
2010	—	`conf`	Cancer Immunoprevention: What Can We Learn from in Silico Models? ICIC (3) Francesco Pappalardo, Marzio Pennisi, Alessandro Cincotti, Ferdinando Chiacchio, Santo Motta, Pierluigi Lollini
2010	—	`conf`	GRIDUISS - A Grid Based Universal Immune System Simulator Framework. ICIC (1) Francesco Pappalardo, Marzio Pennisi, Ferdinando Chiacchio, Alessandro Cincotti, Santo Motta
2010	J	`jnl`	Modeling the competition between lung metastases and the immune system using agents. BMC Bioinform. Marzio Pennisi, Francesco Pappalardo, Arianna Palladini, Giordano Nicoletti, Patrizia Nanni, Pierluigi Lollini, Santo Motta
2010	—	`conf`	Universal immune system simulator framework (UISS). BCB Francesco Pappalardo, Marzio Pennisi, Santo Motta
2009	—	`conf`	Agent Based Modeling of Atherosclerosis: A Concrete Help in Personalized Treatments. ICIC (2) Francesco Pappalardo, Alessandro Cincotti, Alfredo Motta, Marzio Pennisi
2009	—	`conf`	Agent Based Modeling of Lung Metastasis-Immune System Competition. ICARIS Marzio Pennisi, Francesco Pappalardo, Santo Motta
2009	—	`conf`	HAMFAST: Fast Hamming Distance Computation. CSIE (1) Francesco Pappalardo, Cristiano Calonaci, Marzio Pennisi, Emilio Mastriani, Santo Motta
2009	J	`jnl`	ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization. Briefings Bioinform. Francesco Pappalardo, Mark D. Halling-Brown, Nicolas Rapin, Ping Zhang, Davide Alemani, Andrew P. J. Emerson, Paola Paci, Patrice Duroux, Marzio Pennisi, Arianna Palladini, Olivo Miotto, Daniel Churchill, Elda Rossi, Adrian J. Shepherd, David S. Moss, Filippo Castiglione, Massimo Bernaschi, Marie-Paule Lefranc, Søren Brunak, Santo Motta, Pierluigi Lollini, Kaye E. Basford, Vladimir Brusic
2009	J	`jnl`	Simulated Annealing and Optimal Protocols. J. Circuits Syst. Comput. Marzio Pennisi, Roberto Catanuto, Francesco Pappalardo, Santo Motta, Emilio Mastriani, Alessandro Cincotti
2009	—	`conf`	The ImmunoGrid Simulator: How to Use It. CIBB Francesco Pappalardo, Mark D. Halling-Brown, Marzio Pennisi, Ferdinando Chiacchio, Clare Sansom, Adrian J. Shepherd, David S. Moss, Santo Motta, Vladimir Brusic
2009	J	`jnl`	The MWF method for kinetic equations system. Comput. Math. Appl. Carlo Bianca, Francesco Pappalardo, Santo Motta
2009	C	`conf`	Toward Multi-organs Simulations of Immune-Pathogen Interactions. ISDA Filippo Castiglione, Francesco Pappalardo
2008	J	`jnl`	Modeling immune system control of atherogenesis. Bioinform. Francesco Pappalardo, Salvatore Musumeci, Santo Motta
2008	J	`jnl`	Optimal vaccination schedules using simulated annealing. Bioinform. Marzio Pennisi, Roberto Catanuto, Francesco Pappalardo, Santo Motta
2007	—	`conf`	A Genetic Algorithm for Shortest Path Motion Problem in Three Dimensions. ICIC (2) Marzio Pennisi, Francesco Pappalardo, Alfredo Motta, Alessandro Cincotti
2007	J	`jnl`	Optimization of HAART with genetic algorithms and agent-based models of HIV infection. Bioinform. Filippo Castiglione, Francesco Pappalardo, Massimo Bernaschi, Santo Motta
2007	—	`conf`	Towards a Personalized Schedule with Triplex Vaccine. WILF Francesco Pappalardo, Santo Motta, Pierluigi Lollini, Emilio Mastriani, Marzio Pennisi
2006	J	`jnl`	Discovery of cancer vaccination protocols with a genetic algorithm driving an agent based simulator. BMC Bioinform. Pierluigi Lollini, Santo Motta, Francesco Pappalardo
2006	—	`conf`	Model Deconstruction of an Immunoprevention Vaccine. ICNC (2) Francesco Pappalardo, Pierluigi Lollini, Santo Motta, Emilio Mastriani
2005	—	`conf`	Genetic Algorithm Against Cancer. WILF Francesco Pappalardo, Emilio Mastriani, Pierluigi Lollini, Santo Motta
2005	J	`jnl`	Modeling and simulation of cancer immunoprevention vaccine. Bioinform. Francesco Pappalardo, Pierluigi Lollini, Filippo Castiglione, Santo Motta
2005	—	`conf`	Using Viruses to Improve GAs. ICNC (3) Francesco Pappalardo
2004	—	`—`	Algoritmi evolutivi per l'approssimazione di problemi di ottimizzazione combinatorica. Francesco Pappalardo
2003	—	`conf`	An ant-algorithm for the weighted minimum hitting set problem. SIS Alessandro Cincotti, Vincenzo Cutello, Francesco Pappalardo
2003	A	`conf`	The Hitting Set Problem and Evolutionary Algorithmic Techniques with ad-hoc Viruses (HEAT-V). GECCO Vincenzo Cutello, Francesco Pappalardo
2002	B	`conf`	An evolutionary algorithm for the T-constrained variation of Minimum Hitting Set problem. IEEE Congress on Evolutionary Computation Vincenzo Cutello, Emilio Mastriani, Francesco Pappalardo
2000	—	`conf`	Piranha Audit: Kernel Enhancements And Utilities To Improve Audit/Logging. Annual Linux Showcase & Conference Vincenzo Cutello, Emilio Mastriani, Francesco Pappalardo