Francesco Ciompi

92 papers B 1Misc 5Journal 53Unranked 30

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Designing UNICORN: a Unified Benchmark for Imaging in Computational Pathology, Radiology, and Natural Language. CoRR Michelle Stegeman, Lena Philipp, Fennie van der Graaf, Marina D'Amato, Clément Grisi, Luc Builtjes, Joeran S. Bosma, Judith Lefkes, Rianne A. Weber, James A. Meakin, Thomas Koopman, Anne Mickan, Mathias Prokop, Ewoud J. Smit, Geert Litjens, Jeroen van der Laak, Bram van Ginneken, Maarten de Rooij, Henkjan Huisman, Colin Jacobs, Francesco Ciompi, Alessa Hering
2025	J	`jnl`	"No negatives needed": weakly-supervised regression for interpretable tumor detection in whole-slide histopathology images. CoRR Marina D'Amato, Jeroen van der Laak, Francesco Ciompi
2025	J	`jnl`	A Multicentric Dataset for Training and Benchmarking Breast Cancer Segmentation in H&E Slides. CoRR Carlijn M. Lems, Leslie Tessier, John-Melle Bokhorst, Mart van Rijthoven, Witali Aswolinskiy, Matteo Pozzi, Natalie Klubickova, Suzanne Dintzis, Michela Campora, Maschenka Balkenhol, Peter Bult, Joey Spronck, Thomas Detone, Mattia Barbareschi, Enrico Munari, Giuseppe Bogina, Jelle Wesseling, Esther H. Lips, Francesco Ciompi, Frédérique Meeuwsen, Jeroen van der Laak
2025	J	`jnl`	A tissue and cell-level annotated H&E and PD-L1 histopathology image dataset in non-small cell lung cancer. CoRR Joey Spronck, Leander van Eekelen, Dominique van Midden, Joep Bogaerts, Leslie Tessier, Valerie Dechering, Muradije Demirel-Andishmand, Gabriel Silva de Souza, Roland Nemeth, Enrico Munari, Giuseppe Bogina, Ilaria Girolami, Albino Eccher, Balazs Acs, Ceren Boyaci, Natalie Klubickova, Monika Looijen-Salamon, Shoko Vos, Francesco Ciompi
2025	J	`jnl`	Democratizing Pathology Co-Pilots: An Open Pipeline and Dataset for Whole-Slide Vision-Language Modelling. CoRR Sander Moonemans, Sebastiaan Ram, Frédérique Meeuwsen, Carlijn M. Lems, Jeroen van der Laak, Geert Litjens, Francesco Ciompi
2025	J	`jnl`	The DRAGON benchmark for clinical NLP. npj Digit. Medicine Joeran S. Bosma, Koen Dercksen, Luc Builtjes, Romain André, Christian Roest, Stefan J. Fransen, Constant R. Noordman, Mar Navarro-Padilla, Judith Lefkes, Natália Alves, Max J. J. de Grauw, Leander van Eekelen, Joey Spronck, Megan Schuurmans, Bram De Wilde, Ward Hendrix, Witali Aswolinskiy, Anindo Saha, Jasper J. Twilt, Daan Geijs, Jeroen Veltman, Derya Yakar, Maarten de Rooij, Francesco Ciompi, Alessa Hering, Jeroen Geerdink, Henkjan Huisman, Quintin van Lohuizen, Michelle Stegeman, Karlijn Rutten, Inge M. E. Smit, Gijs Stultiens, Christiaan G. Overduin, M. J. C. M. Rutten, Ernst Th. Scholten, Rachel S. van der Post, Katrien Grunberg, Shoko Vos, Elise M. G. Taken, Iris D. Nagtegaal, Anne Mickan, Miriam Groeneveld, Paul K. Gerke, James A. Meakin, Monika Looijen-Salamon, Tijmen L. M. de Haas, Fabian Hoitsma, Marina D'Amato
2024	—	`conf`	"HoVer-UNet": Accelerating Hovernet with Unet-Based Multi-Class Nuclei Segmentation Via Knowledge Distillation. ISBI Cristian Tommasino, Cristiano Russo, Antonio Maria Rinaldi, Francesco Ciompi
2024	—	`conf`	Benchmarking Hierarchical Image Pyramid Transformer for the Classification of Colon Biopsies and Polyps Histopathology Images. ISBI Nohemí Sofia León Contreras, Clément Grisi, Witali Aswolinskiy, Simona Vatrano, Filippo Fraggetta, Iris Nagtegaal, Marina D'Amato, Francesco Ciompi
2024	J	`jnl`	Benchmarking Hierarchical Image Pyramid Transformer for the classification of colon biopsies and polyps in histopathology images. CoRR Nohemí Sofia León Contreras, Marina D'Amato, Francesco Ciompi, Clément Grisi, Witali Aswolinskiy, Simona Vatrano, Filippo Fraggetta, Iris Nagtegaal
2024	—	`conf`	Color Deconvolution for Color-Agnostic and Cross-Modality Analysis of Immunohistochemistry Whole-Slide Images with Deep Learning. ISBI Carlijn M. Lems, Daan J. Geijs, John-Melle Bokhorst, Maxime Sülter, Leander van Eekelen, Francesco Ciompi
2024	J	`jnl`	DEPICTER: Deep representation clustering for histology annotation. Comput. Biol. Medicine Eduard Chelebian, Christophe Avenel, Francesco Ciompi, Carolina Wählby
2024	—	`conf`	Histopathobiome - integrating histopathology and microbiome data via multimodal deep learning. COMPAY@MICCAI Agata Polejowska, Annemarie Boleij, Francesco Ciompi
2024	J	`jnl`	Hitchhiker's guide to cancer-associated lymphoid aggregates in histology images: manual and deep learning-based quantification approaches. CoRR Karina Silina, Francesco Ciompi
2024	J	`jnl`	LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset. IEEE J. Biomed. Health Informatics Yiping Jiao, Jeroen van der Laak, Shadi Albarqouni, Zhang Li, Tao Tan, Abhir Bhalerao, Shenghua Cheng, Jiabo Ma, John Pocock, Josien P. W. Pluim, Navid Alemi Koohbanani, Raja Muhammad Saad Bashir, Shan-E-Ahmed Raza, Sibo Liu, Simon Graham, Suzanne C. Wetstein, Syed Ali Khurram, Xiuli Liu, Nasir M. Rajpoot, Mitko Veta, Francesco Ciompi
2024	J	`jnl`	Multimodal representations of biomedical knowledge from limited training whole slide images and reports using deep learning. Medical Image Anal. Niccolò Marini, Stefano Marchesin, Marek Wodzinski, Alessandro Caputo, Damian Podareanu, Bryan Cardenas Guevara, Svetla Boytcheva, Simona Vatrano, Filippo Fraggetta, Francesco Ciompi, Gianmaria Silvello, Henning Müller, Manfredo Atzori
2024	—	`ed.`	Proceedings of the MICCAI Workshop on Computational Pathology, Marrakesh, Morocco, 6 October 2024. COMPAY@MICCAI Francesco Ciompi, Nadieh Khalili, Linda Studer, Milda Poceviciute, Amjad Khan, Mitko Veta, Yiping Jiao, Neda Haj-Hosseini, Hao Chen, Shan Raza, Fayyaz Minhas, Inti Zlobec, Nikolay Burlutskiy, Veronica Vilaplana, Biagio Brattoli, Henning Müller, Manfredo Atzori
2024	—	`conf`	Scoring Tumor-Infiltrating Lymphocytes in breast DCIS: A guideline-driven artificial intelligence approach. COMPAY@MICCAI Matteo Pozzi, Natalie Klubickova, Michela Campora, Frédérique Meeuwsen, Joey Spronck, Carlijn M. Lems, Michelle Stegeman, Leslie Tessier, Mattia Barbareschi, Jeroen van der Laak, Giuseppe Jurman, Francesco Ciompi
2024	J	`jnl`	Uncertainty-guided annotation enhances segmentation with the human-in-the-loop. CoRR Nadieh Khalili, Joey Spronck, Francesco Ciompi, Jeroen van der Laak, Geert Litjens
2023	J	`jnl`	"HoVer-UNet": Accelerating HoVerNet with UNet-based multi-class nuclei segmentation via knowledge distillation. CoRR Cristian Tommasino, Cristiano Russo, Antonio Maria Rinaldi, Francesco Ciompi
2023	—	`conf`	Abstract: the MIDOG Challenge 2021 - Mitosis Domain Generalization in Histopathology Images. Bildverarbeitung für die Medizin Marc Aubreville, Nikolas Stathonikos, Christof A. Bertram, Robert Klopfleisch, Natalie D. ter Hoeve, Francesco Ciompi, Frauke Wilm, Christian Marzahl, Taryn A. Donovan, Andreas K. Maier, Mitko Veta, Katharina Breininger
2023	J	`jnl`	LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset. CoRR Yiping Jiao, Jeroen van der Laak, Shadi Albarqouni, Zhang Li, Tao Tan, Abhir Bhalerao, Jiabo Ma, Jiamei Sun, Johnathon Pocock, Josien P. W. Pluim, Navid Alemi Koohbanani, Raja Muhammad Saad Bashir, Shan E Ahmed Raza, Sibo Liu, Simon Graham, Suzanne C. Wetstein, Syed Ali Khurram, Thomas Watson, Nasir M. Rajpoot, Mitko Veta, Francesco Ciompi
2023	J	`jnl`	Mitosis domain generalization in histopathology images - The MIDOG challenge. Medical Image Anal. Marc Aubreville, Nikolas Stathonikos, Christof A. Bertram, Robert Klopfleisch, Natalie D. ter Hoeve, Francesco Ciompi, Frauke Wilm, Christian Marzahl, Taryn A. Donovan, Andreas K. Maier, Jack Breen, Nishant Ravikumar, Youjin Chung, Jinah Park, Ramin Nateghi, Fattaneh Pourakpour, Rutger H. J. Fick, Saima Ben Hadj, Mostafa Jahanifar, Adam Shephard, Jakob Dexl, Thomas Wittenberg, Satoshi Kondo, Maxime W. Lafarge, Viktor H. Koelzer, Jingtang Liang, Yubo Wang, Xi Long, Jingxin Liu, Salar Razavi, April Khademi, Sen Yang, Xiyue Wang, Ramona Erber, Andrea Klang, Karoline Lipnik, Pompei Bolfa, Michael J. Dark, Gabriel Wasinger, Mitko Veta, Katharina Breininger
2023	—	`conf`	nnUNet meets pathology: Bridging the gap for application to whole slide images and computational biomarkers. MIDL Joey Spronck, Thijs Gelton, Leander van Eekelen, Joep Bogaerts, Leslie Tessier, Mart van Rijthoven, Lieke van der Woude, Michel van den Heuvel, Willemijn Theelen, Jeroen van der Laak, Francesco Ciompi
2022	J	`jnl`	Mitosis domain generalization in histopathology images - The MIDOG challenge. CoRR Marc Aubreville, Nikolas Stathonikos, Christof A. Bertram, Robert Klopfleisch, Natalie D. ter Hoeve, Francesco Ciompi, Frauke Wilm, Christian Marzahl, Taryn A. Donovan, Andreas K. Maier, Jack Breen, Nishant Ravikumar, Youjin Chung, Jinah Park, Ramin Nateghi, Fattaneh Pourakpour, Rutger H. J. Fick, Saima Ben Hadj, Mostafa Jahanifar, Nasir M. Rajpoot, Jakob Dexl, Thomas Wittenberg, Satoshi Kondo, Maxime W. Lafarge, Viktor H. Koelzer, Jingtang Liang, Yubo Wang, Xi Long, Jingxin Liu, Salar Razavi, April Khademi, Sen Yang, Xiyue Wang, Mitko Veta, Katharina Breininger
2022	J	`jnl`	Seeded iterative clustering for histology region identification. CoRR Eduard Chelebian, Francesco Ciompi, Carolina Wählby
2022	J	`jnl`	Unleashing the potential of digital pathology data by training computer-aided diagnosis models without human annotations. npj Digit. Medicine Niccolò Marini, Stefano Marchesin, Sebastian Otálora, Marek Wodzinski, Alessandro Caputo, Mart van Rijthoven, Witali Aswolinskiy, John-Melle Bokhorst, Damian Podareanu, Edyta Petters, Svetla Boytcheva, Genziana Buttafuoco, Simona Vatrano, Filippo Fraggetta, Jeroen van der Laak, Maristella Agosti, Francesco Ciompi, Gianmaria Silvello, Henning Müller, Manfredo Atzori
2021	—	`conf`	A Partial Label-Based Machine Learning Approach For Cervical Whole-Slide Image Classification: The Winning TissueNet Solution EMBC Rutger H. J. Fick, Brice Tayart, Capucine Bertrand, Solene Chan-Lang, Tina Rey, Francesco Ciompi, Cyprien Tilmant, Isabelle Farré, Saima Ben Hadj
2021	J	`jnl`	Automated risk classification of colon biopsies based on semantic segmentation of histopathology images. CoRR John-Melle Bokhorst, Iris D. Nagtegaal, Filippo Fraggetta, Simona Vatrano, Wilma Mesker, Michael Vieth, Jeroen van der Laak, Francesco Ciompi
2021	J	`jnl`	Editorial Computational Pathology. IEEE J. Biomed. Health Informatics Francesco Ciompi, Mitko Veta, Jeroen van der Laak, Nasir M. Rajpoot
2021	—	`conf`	Few-shot weakly supervised detection and retrieval in histopathology whole-slide images. Digital Pathology Mart van Rijthoven, Maschenka Balkenhol, Manfredo Atzori, Peter Bult, Jeroen van der Laak, Francesco Ciompi
2021	J	`jnl`	HookNet: Multi-resolution convolutional neural networks for semantic segmentation in histopathology whole-slide images. Medical Image Anal. Mart van Rijthoven, Maschenka Balkenhol, Karina Silina, Jeroen van der Laak, Francesco Ciompi
2021	—	`ed.`	MICCAI Workshop on Computational Pathology, COMPAY@MICCAI 2021, 27 September 2021, Virtual Event COMPAY@MICCAI Manfredo Atzori, Nikolay Burlutskiy, Francesco Ciompi, Zhang Li, Fayyaz A. Minhas, Henning Müller, Tingying Peng, Nasir M. Rajpoot, Ben Torben-Nielsen, Jeroen van der Laak, Mitko Veta, Yinyin Yuan, Inti Zlobec
2021	—	`conf`	Multi-Scale Task Multiple Instance Learning for the Classification of Digital Pathology Images with Global Annotations. COMPAY@MICCAI Niccolò Marini, Sebastian Otálora, Francesco Ciompi, Gianmaria Silvello, Stefano Marchesin, Simona Vatrano, Genziana Buttafuoco, Manfredo Atzori, Henning Müller
2021	J	`jnl`	Multi_Scale_Tools: A Python Library to Exploit Multi-Scale Whole Slide Images. Frontiers Comput. Sci. Niccolò Marini, Sebastian Otálora, Damian Podareanu, Mart van Rijthoven, Jeroen van der Laak, Francesco Ciompi, Henning Müller, Manfredo Atzori
2021	J	`jnl`	Neural Image Compression for Gigapixel Histopathology Image Analysis. IEEE Trans. Pattern Anal. Mach. Intell. David Tellez, Geert Litjens, Jeroen van der Laak, Francesco Ciompi
2021	—	`conf`	Neural image compression for non-small cell lung cancer subtype classification in H&E stained whole-slide images. Digital Pathology Witali Aswolinskiy, David Tellez, Gabriel Raya, Lieke van der Woude, Monika Looijen-Salamon, Jeroen van der Laak, Katrien Grunberg, Francesco Ciompi
2021	J	`jnl`	Quantifying the Scanner-Induced Domain Gap in Mitosis Detection. CoRR Marc Aubreville, Christof Bertram, Mitko Veta, Robert Klopfleisch, Nikolas Stathonikos, Katharina Breininger, Natalie D. ter Hoeve, Francesco Ciompi, Andreas Maier
2020	—	`conf`	A deep learning approach to assess the predominant tumor growth pattern in whole-slide images of lung adenocarcinoma. Digital Pathology Zaneta Swiderska-Chadaj, Karolina Nurzynska, Bartlomiej Grala, Katrien Grunberg, Lieke van der Woude, Monika Looijen-Salamon, Ann E. Walts, Tomasz Markiewicz, Francesco Ciompi, Arkadiusz Gertych
2020	J	`jnl`	Automated Scoring of Nuclear Pleomorphism Spectrum with Pathologist-level Performance in Breast Cancer. CoRR Caner Mercan, Maschenka Balkenhol, Roberto Salgado, Mark Sherman, Philippe Vielh, Willem Vreuls, António Polónia, Hugo M. Horlings, Wilko Weichert, Jodi M. Carter, Peter Bult, Matthias Christgen, Carsten Denkert, Koen van de Vijver, Jeroen van der Laak, Francesco Ciompi
2020	—	`conf`	Extending Unsupervised Neural Image Compression With Supervised Multitask Learning. MIDL David Tellez, Diederik Höppener, Cornelis Verhoef, Dirk J. Grünhagen, Pieter Nierop, Michal Drozdzal, Jeroen van der Laak, Francesco Ciompi
2020	J	`jnl`	Extending Unsupervised Neural Image Compression With Supervised Multitask Learning. CoRR David Tellez, Diederik Höppener, Cornelis Verhoef, Dirk J. Grünhagen, Pieter Nierop, Michal Drozdzal, Jeroen van der Laak, Francesco Ciompi
2020	J	`jnl`	HookNet: multi-resolution convolutional neural networks for semantic segmentation in histopathology whole-slide images. CoRR Mart van Rijthoven, Maschenka Balkenhol, Karina Silina, Jeroen van der Laak, Francesco Ciompi
2020	—	`conf`	Virtual Staining for Mitosis Detection in Breast Histopathology. ISBI Caner Mercan, G. C. A. M. Mooij, David Tellez, Johannes Lotz, Nick Weiss, Marcel van Gerven, Francesco Ciompi
2020	J	`jnl`	Virtual staining for mitosis detection in Breast Histopathology. CoRR Caner Mercan, Germonda Reijnen-Mooij, David Tellez Martin, Johannes Lotz, Nick Weiss, Marcel van Gerven, Francesco Ciompi
2019	—	`conf`	Learning from sparsely annotated data for semantic segmentation in histopathology images. MIDL John-Melle Bokhorst, Hans Pinckaers, Peter van Zwam, Iris Nagtegaal, Jeroen van der Laak, Francesco Ciompi
2019	J	`jnl`	Learning to detect lymphocytes in immunohistochemistry with deep learning. Medical Image Anal. Zaneta Swiderska-Chadaj, Hans Pinckaers, Mart van Rijthoven, Maschenka Balkenhol, Margarita Melnikova, Oscar Geessink, Quirine Manson, Mark Sherman, António Polónia, Jeremy Parry, Mustapha Abubakar, Geert Litjens, Jeroen van der Laak, Francesco Ciompi
2019	J	`jnl`	Needles in Haystacks: On Classifying Tiny Objects in Large Images. CoRR Nick Pawlowski, Suvrat Bhooshan, Nicolas Ballas, Francesco Ciompi, Ben Glocker, Michal Drozdzal
2019	J	`jnl`	Predicting breast tumor proliferation from whole-slide images: The TUPAC16 challenge. Medical Image Anal. Mitko Veta, Yujing J. Heng, Nikolas Stathonikos, Babak Ehteshami Bejnordi, Francisco Beca, Thomas Wollmann, Karl Rohr, Manan A. Shah, Dayong Wang, Mikaël Rousson, Martin Hedlund, David Tellez, Francesco Ciompi, Erwan Zerhouni, David Lanyi, Matheus Palhares Viana, Vassili Kovalev, Vitali Liauchuk, Josien P. W. Pluim
2019	J	`jnl`	Quantifying the effects of data augmentation and stain color normalization in convolutional neural networks for computational pathology. CoRR David Tellez, Geert Litjens, Péter Bándi, Wouter Bulten, John-Melle Bokhorst, Francesco Ciompi, Jeroen van der Laak
2019	J	`jnl`	Quantifying the effects of data augmentation and stain color normalization in convolutional neural networks for computational pathology. Medical Image Anal. David Tellez, Geert Litjens, Péter Bándi, Wouter Bulten, John-Melle Bokhorst, Francesco Ciompi, Jeroen van der Laak
2018	—	`conf`	Automatic Detection of Tumor Budding in Colorectal Carcinoma with Deep Learning. COMPAY/OMIA@MICCAI John-Melle Bokhorst, Lucia Rijstenberg, Danny Goudkade, Iris Nagtegaal, Jeroen van der Laak, Francesco Ciompi
2018	—	`ed.`	Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16-20, 2018, Proceedings COMPAY/OMIA@MICCAI Danail Stoyanov, Zeike Taylor, Francesco Ciompi, Yanwu Xu, Anne L. Martel, Lena Maier-Hein, Nasir M. Rajpoot, Jeroen van der Laak, Mitko Veta, Stephen J. McKenna, David R. J. Snead, Emanuele Trucco, Mona Kathryn Garvin, Xinjian Chen, Hrvoje Bogunovic
2018	—	`conf`	H&E stain augmentation improves generalization of convolutional networks for histopathological mitosis detection. Digital Pathology David Tellez, Maschenka Balkenhol, Nico Karssemeijer, Geert Litjens, Jeroen van der Laak, Francesco Ciompi
2018	J	`jnl`	Neural Image Compression for Gigapixel Histopathology Image Analysis. CoRR David Tellez, Geert Litjens, Jeroen van der Laak, Francesco Ciompi
2018	J	`jnl`	Predicting breast tumor proliferation from whole-slide images: the TUPAC16 challenge. CoRR Mitko Veta, Yujing J. Heng, Nikolas Stathonikos, Babak Ehteshami Bejnordi, Francisco Beca, Thomas Wollmann, Karl Rohr, Manan A. Shah, Dayong Wang, Mikaël Rousson, Martin Hedlund, David Tellez, Francesco Ciompi, Erwan Zerhouni, David Lanyi, Matheus Palhares Viana, Vassili Kovalev, Vitali Liauchuk, Hady Ahmady Phoulady, Talha Qaiser, Simon Graham, Nasir M. Rajpoot, Erik Sjöblom, Jesper Molin, Kyunghyun Paeng, Sangheum Hwang, Sunggyun Park, Zhipeng Jia, Eric I-Chao Chang, Yan Xu, Andrew H. Beck, Paul J. van Diest, Josien P. W. Pluim
2018	J	`jnl`	Whole-Slide Mitosis Detection in H&E Breast Histology Using PHH3 as a Reference to Train Distilled Stain-Invariant Convolutional Networks. CoRR David Tellez, Maschenka Balkenhol, Irene Otte-Höller, Rob van de Loo, Rob Vogels, Peter Bult, Carla Wauters, Willem Vreuls, Suzanne Mol, Nico Karssemeijer, Geert Litjens, Jeroen van der Laak, Francesco Ciompi
2018	J	`jnl`	Whole-Slide Mitosis Detection in H&E Breast Histology Using PHH3 as a Reference to Train Distilled Stain-Invariant Convolutional Networks. IEEE Trans. Medical Imaging David Tellez, Maschenka Balkenhol, Irene Otte-Höller, Rob van de Loo, Rob Vogels, Peter Bult, Carla Wauters, Willem Vreuls, Suzanne Mol, Nico Karssemeijer, Geert Litjens, Jeroen van der Laak, Francesco Ciompi
2017	J	`jnl`	A Survey on Deep Learning in Medical Image Analysis. CoRR Geert Litjens, Thijs Kooi, Babak Ehteshami Bejnordi, Arnaud Arindra Adiyoso Setio, Francesco Ciompi, Mohsen Ghafoorian, Jeroen A. W. M. van der Laak, Bram van Ginneken, Clara I. Sánchez
2017	J	`jnl`	A survey on deep learning in medical image analysis. Medical Image Anal. Geert Litjens, Thijs Kooi, Babak Ehteshami Bejnordi, Arnaud Arindra Adiyoso Setio, Francesco Ciompi, Mohsen Ghafoorian, Jeroen A. W. M. van der Laak, Bram van Ginneken, Clara I. Sánchez
2017	J	`jnl`	Comparison of Different Methods for Tissue Segmentation in Histopathological Whole-Slide Images. CoRR Péter Bándi, Rob van de Loo, Milad Intezar, Daan Geijs, Francesco Ciompi, Bram van Ginneken, Jeroen van der Laak, Geert Litjens
2017	—	`conf`	Comparison of different methods for tissue segmentation in histopathological whole-slide images. ISBI Péter Bándi, Rob van de Loo, Milad Intezar, Daan Geijs, Francesco Ciompi, Bram van Ginneken, Jeroen van der Laak, Geert Litjens
2017	J	`jnl`	Improving airway segmentation in computed tomography using leak detection with convolutional networks. Medical Image Anal. Jean-Paul Charbonnier, Eva M. van Rikxoort, Arnaud A. A. Setio, Cornelia Schaefer-Prokop, Bram van Ginneken, Francesco Ciompi
2017	—	`conf`	Intra-coronary Stent Localization in Intravascular Ultrasound Sequences, A Preliminary Study. CVII-STENT/LABELS@MICCAI Simone Balocco, Francesco Ciompi, Juan Rigla, Xavier Carrillo, Josepa Mauri, Petia Radeva
2017	—	`conf`	The importance of stain normalization in colorectal tissue classification with convolutional networks. ISBI Francesco Ciompi, Oscar Geessink, Babak Ehteshami Bejnordi, Gabriel Silva de Souza, Alexi Baidoshvili, Geert Litjens, Bram van Ginneken, Iris Nagtegaal, Jeroen van der Laak
2017	J	`jnl`	The importance of stain normalization in colorectal tissue classification with convolutional networks. CoRR Francesco Ciompi, Oscar Geessink, Babak Ehteshami Bejnordi, Gabriel Silva de Souza, Alexi Baidoshvili, Geert Litjens, Bram van Ginneken, Iris Nagtegaal, Jeroen van der Laak
2016	J	`jnl`	Automatic Pulmonary Artery-Vein Separation and Classification in Computed Tomography Using Tree Partitioning and Peripheral Vessel Matching. IEEE Trans. Medical Imaging Jean-Paul Charbonnier, Monique Brink, Francesco Ciompi, Ernst Th. Scholten, Cornelia Schaefer-Prokop, Eva M. van Rikxoort
2016	—	`conf`	Deep convolutional neural networks for automatic coronary calcium scoring in a screening study with low-dose chest CT. Computer-Aided Diagnosis Nikolas Leßmann, Ivana Isgum, Arnaud A. A. Setio, Bob D. de Vos, Francesco Ciompi, Pim A. de Jong, Matthijs Oudkerk, W. P. Th. M. Mali, Max A. Viergever, Bram van Ginneken
2016	J	`jnl`	Pulmonary Nodule Detection in CT Images: False Positive Reduction Using Multi-View Convolutional Networks. IEEE Trans. Medical Imaging Arnaud Arindra Adiyoso Setio, Francesco Ciompi, Geert Litjens, Paul K. Gerke, Colin Jacobs, Sarah J. van Riel, Mathilde Marie Winkler Wille, Matiullah Naqibullah, Clara I. Sánchez, Bram van Ginneken
2016	J	`jnl`	Towards automatic pulmonary nodule management in lung cancer screening with deep learning. CoRR Francesco Ciompi, Kaman Chung, Sarah J. van Riel, Arnaud Arindra Adiyoso Setio, Paul K. Gerke, Colin Jacobs, Ernst Th. Scholten, Cornelia Schaefer-Prokop, Mathilde M. W. Wille, Alfonso Marchiano, Ugo Pastorino, Mathias Prokop, Bram van Ginneken
2015	J	`jnl`	Automatic classification of pulmonary peri-fissural nodules in computed tomography using an ensemble of 2D views and a convolutional neural network out-of-the-box. Medical Image Anal. Francesco Ciompi, Bartjan de Hoop, Sarah J. van Riel, Kaman Chung, Ernst Th. Scholten, Matthijs Oudkerk, Pim A. de Jong, Mathias Prokop, Bram van Ginneken
2015	—	`conf`	Automatic detection of spiculation of pulmonary nodules in computed tomography images. Computer-Aided Diagnosis Francesco Ciompi, Colin Jacobs, Ernst Th. Scholten, Sarah J. van Riel, Mathilde M. W. Wille, Mathias Prokop, Bram van Ginneken
2015	J	`jnl`	Bag-of-Frequencies: A Descriptor of Pulmonary Nodules in Computed Tomography Images. IEEE Trans. Medical Imaging Francesco Ciompi, Colin Jacobs, Ernst Th. Scholten, Mathilde M. W. Wille, Pim A. de Jong, Mathias Prokop, Bram van Ginneken
2015	—	`conf`	Computer-aided detection of lung cancer: combining pulmonary nodule detection systems with a tumor risk prediction model. Computer-Aided Diagnosis Arnaud A. A. Setio, Colin Jacobs, Francesco Ciompi, Sarah J. van Riel, Mathilde Marie Winkler Wille, Asger Dirksen, Eva M. van Rikxoort, Bram van Ginneken
2015	—	`conf`	Off-the-shelf convolutional neural network features for pulmonary nodule detection in computed tomography scans. ISBI Bram van Ginneken, Arnaud A. A. Setio, Colin Jacobs, Francesco Ciompi
2014	J	`jnl`	ECOC-DRF: Discriminative random fields based on error correcting output codes. Pattern Recognit. Francesco Ciompi, Oriol Pujol, Petia Radeva
2014	J	`jnl`	Stacked Sequential Scale-SpaceTaylor Context. IEEE Trans. Pattern Anal. Mach. Intell. Carlo Gatta, Francesco Ciompi
2014	J	`jnl`	Standardized evaluation methodology and reference database for evaluating IVUS image segmentation. Comput. Medical Imaging Graph. Simone Balocco, Carlo Gatta, Francesco Ciompi, Andreas Wahle, Petia Radeva, Stéphane G. Carlier, Gözde B. Ünal, Elias Sanidas, Josepa Mauri, Xavier Carrillo, Tomas Kovarnik, Ching-Wei Wang, Hsiang-Chou Chen, Themis P. Exarchos, Dimitrios I. Fotiadis, François Destrempes, Guy Cloutier, Oriol Pujol, Marina Alberti, Eduardo Gerardo Mendizabal Ruiz, Mariano Rivera, Timur Aksoy, Richard W. Downe, Ioannis A. Kakadiaris
2013	Misc	`conf`	Learning to Detect Stent Struts in Intravascular Ultrasound. IbPRIA Francesco Ciompi, Rui Hua, Simone Balocco, Marina Alberti, Oriol Pujol, Carles Caus, Josepa Mauri, Petia Radeva
2013	—	`conf`	Stent Shape Estimation through a Comprehensive Interpretation of Intravascular Ultrasound Images. MICCAI (2) Francesco Ciompi, Simone Balocco, Carles Caus, Josepa Mauri, Petia Radeva
2012	J	`jnl`	Automatic Bifurcation Detection in Coronary IVUS Sequences. IEEE Trans. Biomed. Eng. Marina Alberti, Simone Balocco, Carlo Gatta, Francesco Ciompi, Oriol Pujol, Joana Silva, Xavier Carrillo, Petia Radeva
2012	J	`jnl`	HoliMAb: A holistic approach for Media-Adventitia border detection in intravascular ultrasound. Medical Image Anal. Francesco Ciompi, Oriol Pujol, Carlo Gatta, Marina Alberti, Simone Balocco, Xavier Carrillo, Josepa Mauri-Ferre, Petia Radeva
2011	—	`conf`	A Holistic Approach for the Detection of Media-Adventitia Border in IVUS. MICCAI (3) Francesco Ciompi, Oriol Pujol, Carlo Gatta, Xavier Carrillo, Josepa Mauri, Petia Radeva
2011	Misc	`conf`	Automatic Branching Detection in IVUS Sequences. IbPRIA Marina Alberti, Carlo Gatta, Simone Balocco, Francesco Ciompi, Oriol Pujol, Joana Silva, Xavier Carrillo, Petia Radeva
2011	Misc	`conf`	Combining Growcut and Temporal Correlation for IVUS Lumen Segmentation. IbPRIA Simone Balocco, Carlo Gatta, Francesco Ciompi, Oriol Pujol, Xavier Carrillo, Josepa Mauri, Petia Radeva
2011	J	`jnl`	Rayleigh Mixture Model for Plaque Characterization in Intravascular Ultrasound. IEEE Trans. Biomed. Eng. José C. R. Seabra, Francesco Ciompi, Oriol Pujol, Josepa Mauri, Petia Radeva, João M. Sanches
2010	B	`conf`	A Meta-Learning Approach to Conditional Random Fields Using Error-Correcting Output Codes. ICPR Francesco Ciompi, Oriol Pujol, Petia Radeva
2010	—	`conf`	Real-Time Gating of IVUS Sequences Based on Motion Blur Analysis: Method and Quantitative Validation. MICCAI (2) Carlo Gatta, Simone Balocco, Francesco Ciompi, Rayyan Hemetsberger, Oriol Rodriguez-Leor, Petia Radeva
2010	—	`conf`	Ultrasonographic plaque characterization using a Rayleigh mixture model. ISBI José C. R. Seabra, João M. Sanches, Francesco Ciompi, Petia Radeva
2009	—	`conf`	ECOC Random Fields for Lumen Segmentation in Radial Artery IVUS Sequences. MICCAI (1) Francesco Ciompi, Oriol Pujol, Eduard Fernández-Nofrerías, Josepa Mauri, Petia Radeva
2009	Misc	`conf`	Enhancing In-Vitro IVUS Data for Tissue Characterization. IbPRIA Francesco Ciompi, Oriol Pujol, Oriol Rodriguez-Leor, Carlo Gatta, Angel Serrano Vida, Petia Radeva
2009	—	`conf`	On in-vitro and in-vivo IVUS data fusion. CCIA Francesco Ciompi, Oriol Pujol, Oriol Rodriguez-Leor, Angel Serrano Vida, Josepa Mauri, Petia Radeva
2009	Misc	`conf`	Toward Robust Myocardial Blush Grade Estimation in Contrast Angiography. IbPRIA Carlo Gatta, Juan Diego Gomez Valencia, Francesco Ciompi, Oriol Rodriguez-Leor, Petia Radeva