Franca Fraternali

14 papers Journal 13
YearRankTypeTitle / Venue / Authors
2026 J jnl
Leveraging protein language models and a scoring function for indel characterization and transfer learning.
Patterns
Oriol Gracia Carmona, Vilde Leipart, Gro V. Amdam, Christine A. Orengo, Franca Fraternali
2022 J jnl
PDBe-KB: collaboratively defining the biological context of structural data.
Nucleic Acids Res.
Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
2020 J jnl
PDBe-KB: a community-driven resource for structural and functional annotations.
Nucleic Acids Res.
Mihaly Varadi, John M. Berrisford, Mandar S. Deshpande, Sreenath Nair, Aleksandras Gutmanas, David R. Armstrong, Lukás Pravda, Bissan Al-Lazikani, Stephen Anyango, Geoffrey J. Barton, Karel Berka, Tom L. Blundell, Neera Borkakoti, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Fábio Madeira, M. S. Madhusudhan, Henry J. Martell, Stuart A. MacGowan, Jake E. McGreig, Saqib Mir, Abhik Mukhopadhyay, Luca Parca, Typhaine Paysan-Lafosse, Leandro G. Radusky, António J. M. Ribeiro, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda, Radka Svobodová Vareková, Jonathan D. Tyzack, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
2019 — ch.
Prediction of Protein-Protein Interactions: Looking Through the Kaleidoscope.
Encyclopedia of Bioinformatics and Computational Biology (2)
Anna Laddach, Sun Sook Chung, Franca Fraternali
2018 J jnl
BRepertoire: a user-friendly web server for analysing antibody repertoire data.
Nucleic Acids Res.
Christian Margreitter, Hui-Chun Lu, Catherine Townsend, Alexander Stewart, Deborah K. Dunn-Walters, Franca Fraternali
2018 J jnl
In silico identification of rescue sites by double force scanning.
Bioinform.
Matteo Tiberti, Alessandro Pandini, Franca Fraternali, Arianna Fornili
2017 J jnl
TITINdb - a computational tool to assess titin's role as a disease gene.
Bioinform.
Anna Laddach, Mathias Gautel, Franca Fraternali
2016 J jnl
PinSnps: structural and functional analysis of SNPs in the context of protein interaction networks.
Bioinform.
Hui-Chun Lu, Julián Herrera Braga, Franca Fraternali
2013 J jnl
GSATools: analysis of allosteric communication and functional local motions using a structural alphabet.
Bioinform.
Alessandro Pandini, Arianna Fornili, Franca Fraternali, Jens Kleinjung
2008 J jnl
Multi-Scale Simulations Provide Supporting Evidence for the Hypothesis of Intramolecular Protein Translocation in GroEL/GroES Complexes.
PLoS Comput. Biol.
Ivan Coluzza, Alfonso De Simone, Franca Fraternali, Daan Frenkel
2007 J jnl
MinSet: a general approach to derive maximally representative database subsets by using fragment dictionaries and its application to the SCOP database.
Bioinform.
Alessandro Pandini, Laura Bonati, Franca Fraternali, Jens Kleinjung
2005 J jnl
POPSCOMP: an automated interaction analysis of biomolecular complexes.
Nucleic Acids Res.
Jens Kleinjung, Franca Fraternali
2003 J jnl
POPS: a fast algorithm for solvent accessible surface areas at atomic and residue level.
Nucleic Acids Res.
Luigi Cavallo, Jens Kleinjung, Franca Fraternali
2002 J jnl
Parameter optimized surfaces (POPS): analysis of key interactions and conformational changes in the ribosome.
Nucleic Acids Res.
Franca Fraternali, Luigi Cavallo