Folker Meyer

39 papers A 3B 1C 2Misc 1Journal 19Unranked 12
YearRankTypeTitle / Venue / Authors
2022 J jnl
Towards a trustworthy, secure and reliable enclave for machine learning in a hospital setting: The Essen Medical Computing Platform (EMCP).
CoRR
Hendrik F. R. Schmidt, Jörg Schlötterer, Marcel Bargull, Enrico Nasca, Ryan Aydelott, Christin Seifert, Folker Meyer
2021 — conf
Towards a trustworthy, secure and reliable enclave for machine learning in a hospital setting: The Essen Medical Computing Platform (EMCP).
CogMI
Hendrik F. R. Schmidt, Jörg Schlötterer, Marcel Bargull, Enrico Nasca, Ryan Aydelott, Christin Seifert, Folker Meyer
2019 J jnl
Federation in genomics pipelines: techniques and challenges.
Briefings Bioinform.
Somali Chaterji, Jinkyu Koo, Ninghui Li, Folker Meyer, Ananth Grama, Saurabh Bagchi
2019 J jnl
MG-RAST version 4 - lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis.
Briefings Bioinform.
Folker Meyer, Saurabh Bagchi, Somali Chaterji, Wolfgang Gerlach, Ananth Grama, Travis Harrison, Tobias Paczian, William L. Trimble, Andreas Wilke
2019 — conf
SOPHIA: Online Reconfiguration of Clustered NoSQL Databases for Time-Varying Workloads.
USENIX ATC
Ashraf Mahgoub, Paul Wood, Alexander Medoff, Subrata Mitra, Folker Meyer, Somali Chaterji, Saurabh Bagchi
2019 J jnl
The MG-RAST API explorer: an on-ramp for RESTful query composition.
BMC Bioinform.
Tobias Paczian, William L. Trimble, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer
2018 — conf
On the way to research objects for environmental genomics (or metagenomics).
RO
Folker Meyer, Robert D. Finn, Wolfgang Gerlach, Alex L. Mitchell, Travis Harrison, Andreas Wilke
2017 A conf
Rafiki: a middleware for parameter tuning of NoSQL datastores for dynamic metagenomics workloads.
Middleware
Ashraf Mahgoub, Paul Wood, Sachandhan Ganesh, Subrata Mitra, Wolfgang Gerlach, Travis Harrison, Folker Meyer, Ananth Grama, Saurabh Bagchi, Somali Chaterji
2017 Misc conf
Suitability of NoSQL systems - Cassandra and ScyllaDB - For IoT workloads.
COMSNETS
Ashraf Mahgoub, Sachandhan Ganesh, Folker Meyer, Ananth Grama, Somali Chaterji
2016 — conf
A Case Study in Using Discrete-Event Simulation to Improve the Scalability of MG-RAST.
SIGSIM-PADS
Caitlin Ross, Misbah Mubarak, John Jenkins, Philip H. Carns, Christopher D. Carothers, Robert B. Ross, Wei Tang, Wolfgang Gerlach, Folker Meyer
2016 J jnl
The MG-RAST metagenomics database and portal in 2015.
Nucleic Acids Res.
Andreas Wilke, Jared Bischof, Wolfgang Gerlach, Elizabeth M. Glass, Travis Harrison, Kevin P. Keegan, Tobias Paczian, William L. Trimble, Saurabh Bagchi, Ananth Grama, Somali Chaterji, Folker Meyer
2015 J jnl
A RESTful API for Accessing Microbial Community Data for MG-RAST.
PLoS Comput. Biol.
Andreas Wilke, Jared Bischof, Travis Harrison, Tom Brettin, Mark D'Souza, Wolfgang Gerlach, Hunter Matthews, Tobias Paczian, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer
2015 B conf
Container Orchestration for Scientific Workflows.
IC2E
Wolfgang Gerlach, Wei Tang, Andreas Wilke, Dan Olson, Folker Meyer
2015 — conf
Do specialized distributed frameworks for bioinformatics applications obtain better performance over generic ones?
BCB
Kanak Mahadik, Wei Tang, Saurabh Bagchi, Folker Meyer
2015 — conf
Shock: Active Storage for Multicloud Streaming Data Analysis.
BDC
Andreas Wilke, Wolfgang Gerlach, Travis Harrison, Tobias Paczian, Wei Tang, William L. Trimble, Jared Wilkening, Narayan Desai, Folker Meyer
2014 C conf
Data-Aware Resource Scheduling for Multicloud Workflows: A Fine-Grained Simulation Approach.
CloudCom
Wei Tang, Jonathan Jenkins, Folker Meyer, Robert B. Ross, Rajkumar Kettimuthu, Linda Winkler, Xi Yang, Thomas Lehman, Narayan Desai
2014 — conf
Skyport: container-based execution environment management for multi-cloud scientific workflows.
DataCloud@SC
Wolfgang Gerlach, Wei Tang, Kevin P. Keegan, Travis Harrison, Andreas Wilke, Jared Bischof, Mark D'Souza, Scott Devoid, Daniel E. Murphy-Olson, Narayan Desai, Folker Meyer
2014 — conf
Workload characterization for MG-RAST metagenomic data analytics service in the cloud.
IEEE BigData
Wei Tang, Jared Bischof, Narayan Desai, Kanak Mahadik, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer
2013 — conf
A scalable data analysis platform for metagenomics.
IEEE BigData
Wei Tang, Jared Wilkening, Narayan Desai, Wolfgang Gerlach, Andreas Wilke, Folker Meyer
2012 J jnl
A Platform-Independent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE.
PLoS Comput. Biol.
Kevin P. Keegan, William L. Trimble, Jared Wilkening, Andreas Wilke, Travis Harrison, Mark D'Souza, Folker Meyer
2012 J jnl
Short-read reading-frame predictors are not created equal: sequence error causes loss of signal.
BMC Bioinform.
William L. Trimble, Kevin P. Keegan, Mark D'Souza, Andreas Wilke, Jared Wilkening, Jack A. Gilbert, Folker Meyer
2012 J jnl
The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools.
BMC Bioinform.
Andreas Wilke, Travis Harrison, Jared Wilkening, Dawn Field, Elizabeth M. Glass, Nikos Kyrpides, Konstantinos Mavrommatis, Folker Meyer
2011 J jnl
An experience report: porting the MG-RAST rapid metagenomics analysis pipeline to the cloud.
Concurr. Comput. Pract. Exp.
Andreas Wilke, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer
2011 J jnl
Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG.
BMC Bioinform.
Suparna Mitra, Paul Rupek, Daniel C. Richter, Tim Urich, Jack A. Gilbert, Folker Meyer, Andreas Wilke, Daniel H. Huson
2011 — conf
Predicted Relative Metabolomic Turnover - Predicting Changes in the Environmental Metabolome from the Metagenome.
BIOINFORMATICS
Peter E. Larsen, Frank Collart, Folker Meyer, Jack A. Gilbert
2011 — conf
Proposal for Open Discussion - Informatics Challenges for Next Generation Sequencing Metagenomics Experiments.
BIOINFORMATICS
Folker Meyer, Nikos Kyrpides
2009 J jnl
The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes.
PLoS Comput. Biol.
Florent E. Angly, Dana Willner, Alejandra Prieto-Davó, Robert A. Edwards, Robert Schmieder, Rebecca Vega-Thurber, Dionysios A. Antonopoulos, Katie Barott, Matthew T. Cottrell, Christelle Desnues, Elizabeth A. Dinsdale, Mike Furlan, Matthew Haynes, Matthew R. Henn, Yongfei Hu, David L. Kirchman, Tracey McDole, John D. McPherson, Folker Meyer, R. Michael Miller, Egbert Mundt, Robert K. Naviaux, Beltran Rodriguez-Mueller, Rick Stevens, Linda Wegley, Lixin Zhang, Baoli Zhu, Forest Rohwer
2009 C conf
Using clouds for metagenomics: A case study.
CLUSTER
Jared Wilkening, Andreas Wilke, Narayan Desai, Folker Meyer
2008 J jnl
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.
BMC Bioinform.
Folker Meyer, Daniel Paarmann, Mark D'Souza, Robert Olson, Elizabeth M. Glass, Michael Kubal, Tobias Paczian, Alexis A. Rodriguez, Rick Stevens, Andreas Wilke, Jared Wilkening, Robert A. Edwards
2007 J jnl
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation.
Nucleic Acids Res.
Leslie Klis McNeil, Claudia Reich, Ramy K. Aziz, Daniela Bartels, Matthew Cohoon, Terry Disz, Robert A. Edwards, Svetlana Gerdes, Kaitlyn Hwang, Michael Kubal, Gohar Rem Margaryan, Folker Meyer, William Mihalo, Gary J. Olsen, Robert Olson, Andrei Osterman, Daniel Paarmann, Tobias Paczian, Bruce D. Parrello, Gordon D. Pusch, Dmitry A. Rodionov, Xinghua Shi, Olga Vassieva, Veronika Vonstein, Olga Zagnitko, Fangfang Xia, Jenifer Zinner, Ross A. Overbeek, Rick Stevens
2006 — conf
Finding novel genes in bacterial communities isolated from the environment.
ISMB (Supplement of Bioinformatics)
Lutz Krause, Naryttza N. Diaz, Daniela Bartels, Robert A. Edwards, Alfred Pühler, Forest Rohwer, Folker Meyer, Jens Stoye
2005 J jnl
BACCardI-a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.
Bioinform.
Daniela Bartels, Sebastian Kespohl, Stefan P. Albaum, Tanja Drüke, Alexander Goesmann, Julia Herold, Olaf Kaiser, Alfred Pühler, Friedhelm Pfeiffer, Günter Raddatz, Jens Stoye, Folker Meyer, Stephan C. Schuster
2005 J jnl
BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser.
Nucleic Acids Res.
Alexander Goesmann, Burkhard Linke, Daniela Bartels, Michael Dondrup, Lutz Krause, Heiko Neuweger, Sebastian Oehm, Tobias Paczian, Andreas Wilke, Folker Meyer
2004 J jnl
Development of joint application strategies for two microbial gene finders.
Bioinform.
Alice Carolyn McHardy, Alexander Goesmann, Alfred Pühler, Folker Meyer
2002 J jnl
PathFinder: reconstruction and dynamic visualization of metabolic pathways.
Bioinform.
Alexander Goesmann, Martin Haubrock, Folker Meyer, Jörn Kalinowski, Robert Giegerich
2001 — —
GENDB: a second generation genome annotation system
Folker Meyer
1998 J jnl
Rose: generating sequence families.
Bioinform.
Jens Stoye, Dirk Evers, Folker Meyer
1997 A conf
Generating Benchmarks for Multiple Sequence Alignments and Phylogenic Reconstructions.
ISMB
Jens Stoye, Dirk Evers, Folker Meyer
1996 A conf
GeneFisher-Software Support for the Detection of Postulated Genes.
ISMB
Robert Giegerich, Folker Meyer, Chris Schleiermacher