Florian Eggenhofer

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2022 J jnl
Peakhood: individual site context extraction for CLIP-seq peak regions.
Bioinform.
Michael Uhl, Dominik Rabsch, Florian Eggenhofer, Rolf Backofen
2022 J jnl
RiboReport - benchmarking tools for ribosome profiling-based identification of open reading frames in bacteria.
Briefings Bioinform.
Rick Gelhausen, Teresa Müller, Sarah L. Svensson, Omer S. Alkhnbashi, Cynthia M. Sharma, Florian Eggenhofer, Rolf Backofen
2021 J jnl
<tt>CRISPRloci: </tt> comprehensive and accurate annotation of CRISPR-Cas systems.
Nucleic Acids Res.
Omer S. Alkhnbashi, Alexander Mitrofanov, Robson Bonidia, Martin Raden, Van Dinh Tran, Florian Eggenhofer, Shiraz A. Shah, Ekrem Öztürk, Victor Alexandre Padilha, Danilo Sipoli Sanches, André C. P. L. F. de Carvalho, Rolf Backofen
2021 J jnl
HRIBO: high-throughput analysis of bacterial ribosome profiling data.
Bioinform.
Rick Gelhausen, Sarah L. Svensson, Kathrin Froschauer, Florian Heyl, Lydia Hadjeras, Cynthia M. Sharma, Florian Eggenhofer, Rolf Backofen
2019 J jnl
The RNA workbench 2.0: next generation RNA data analysis.
Nucleic Acids Res.
Jörg Fallmann, Pavankumar Videm, Andrea Bagnacani, Bérénice Batut, Maria A. Doyle, Tomas Klingström, Florian Eggenhofer, Peter F. Stadler, Rolf Backofen, Björn A. Grüning
2018 J jnl
CMV: visualization for RNA and protein family models and their comparisons.
Bioinform.
Florian Eggenhofer, Ivo L. Hofacker, Rolf Backofen, Christian Höner zu Siederdissen
2018 J jnl
Freiburg RNA tools: a central online resource for RNA-focused research and teaching.
Nucleic Acids Res.
Martin Raden, Syed M. Ali, Omer S. Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A. Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen Lott, Mostafa M. Mohamed, Alexander Mattheis, Milad Miladi, Andreas S. Richter, Sebastian Will, Joachim Wolff, Patrick R. Wright, Rolf Backofen
2017 J jnl
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.
Nucleic Acids Res.
Björn A. Grüning, Jörg Fallmann, Dilmurat Yusuf, Sebastian Will, Anika Erxleben, Florian Eggenhofer, Torsten Houwaart, Bérénice Batut, Pavankumar Videm, Andrea Bagnacani, Markus Wolfien, Steffen Lott, Youri Hoogstrate, Wolfgang R. Hess, Olaf Wolkenhauer, Steve Hoffmann, Altuna Akalin, Uwe Ohler, Peter F. Stadler, Rolf Backofen
2013 J jnl
CMCompare webserver: comparing RNA families via covariance models.
Nucleic Acids Res.
Florian Eggenhofer, Ivo L. Hofacker, Christian Höner zu Siederdissen
2011 J jnl
Fast accessibility-based prediction of RNA-RNA interactions.
Bioinform.
Hakim Tafer, Fabian Amman, Florian Eggenhofer, Peter F. Stadler, Ivo L. Hofacker
2011 J jnl
RNApredator: fast accessibility-based prediction of sRNA targets.
Nucleic Acids Res.
Florian Eggenhofer, Hakim Tafer, Peter F. Stadler, Ivo L. Hofacker