Florian Borchert

24 papers B 3Misc 1Journal 12Unranked 8

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Electronic Health Records-based identification of newly diagnosed Crohn's Disease cases. Artif. Intell. Medicine Susanne Ibing, Julian Hugo, Florian Borchert, Linea Schmidt, Caroline Benson, Allison A. Marshall, Colleen Chasteau, Ujunwa Korie, Diana Paguay, Jan-Philipp Sachs, Bernhard Y. Renard, Judy H. Cho, Erwin P. Böttinger, Ryan C. Ungaro
2025	J	`jnl`	High-precision information retrieval for rapid clinical guideline updates. npj Digit. Medicine Florian Borchert, Paul Wullenweber, Annika Oeser, Nina Kreuzberger, Torsten Karge, Thomas Langer, Nicole Skoetz, Lothar H. Wieler, Matthieu-P. Schapranow, Bert Arnrich
2024	J	`jnl`	Improving biomedical entity linking for complex entity mentions with LLM-based text simplification. Database J. Biol. Databases Curation Florian Borchert, Ignacio Llorca, Matthieu-P. Schapranow
2024	J	`jnl`	medBERT.de: A comprehensive German BERT model for the medical domain. Expert Syst. Appl. Keno K. Bressem, Jens-Michalis Papaioannou, Paul Grundmann, Florian Borchert, Lisa C. Adams, Leonhard Liu, Felix Busch, Lina Xu, Jan P. Loyen, Stefan Markus Niehues, Moritz Augustin, Lennart Grosser, Marcus R. Makowski, Hugo J. W. L. Aerts, Alexander Löser
2023	—	`conf`	A Meta-dataset of German Medical Corpora: Harmonization of Annotations and Cross-corpus NER Evaluation. ClinicalNLP@ACL Ignacio Llorca, Florian Borchert, Matthieu-P. Schapranow
2023	—	`conf`	Cross-Lingual Candidate Retrieval and Re-ranking for Biomedical Entity Linking. CLEF Florian Borchert, Ignacio Llorca, Matthieu-P. Schapranow
2023	B	`conf`	GGTWEAK: Gene Tagging with Weak Supervision for German Clinical Text. AIME Sandro Steinwand, Florian Borchert, Silvia Winkler, Matthieu-P. Schapranow
2023	—	`conf`	HPIDHC at NTCIR-17 MedNLP-SC: Data Augmentation and Ensemble Learning for Multilingual Adverse Drug Event Detection. NTCIR Smilla Fox, Martin Preiß, Florian Borchert, Aadil Rasheed, Matthieu-P. Schapranow
2023	J	`jnl`	MEDBERT.de: A Comprehensive German BERT Model for the Medical Domain. CoRR Keno K. Bressem, Jens-Michalis Papaioannou, Paul Grundmann, Florian Borchert, Lisa C. Adams, Leonhard Liu, Felix Busch, Lina Xu, Jan P. Loyen, Stefan Markus Niehues, Moritz Augustin, Lennart Grosser, Marcus R. Makowski, Hugo J. W. L. Aerts, Alexander Löser
2023	B	`conf`	Machine Learning Based Prediction of Incident Cases of Crohn's Disease Using Electronic Health Records from a Large Integrated Health System. AIME Julian Hugo, Susanne Ibing, Florian Borchert, Jan-Philipp Sachs, Judy Cho, Ryan C. Ungaro, Erwin P. Böttinger
2023	J	`jnl`	Programming techniques for improving rule readability for rule-based information extraction natural language processing pipelines of unstructured and semi-structured medical texts. Health Informatics J. Nektarios Ladas, Florian Borchert, Stefan Franz, Alina Rehberg, Natalia Strauch, Kim Katrin Sommer, Michael Marschollek, Matthias Gietzelt
2023	—	`conf`	Resolving Elliptical Compounds in German Medical Text. BioNLP@ACL Niklas Kammer, Florian Borchert, Silvia Winkler, Gerard de Melo, Matthieu-P. Schapranow
2023	J	`jnl`	Software-Tool Support for Collaborative, Virtual, Multi-Site Molecular Tumor Boards. SN Comput. Sci. Matthieu-P. Schapranow, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils
2023	J	`jnl`	Understanding emotions in the context of IT-based self-monitoring. CoRR Danielly F. O. de Paula, Florian Borchert, Ariane Sasso, Falk Uebernickel
2023	J	`jnl`	xMEN: A Modular Toolkit for Cross-Lingual Medical Entity Normalization. CoRR Florian Borchert, Ignacio Llorca, Roland Roller, Bert Arnrich, Matthieu-P. Schapranow
2022	B	`conf`	GGPONC 2.0 - The German Clinical Guideline Corpus for Oncology: Curation Workflow, Annotation Policy, Baseline NER Taggers. LREC Florian Borchert, Christina Lohr, Luise Modersohn, Jonas Witt, Thomas Langer, Markus Follmann, Matthias Gietzelt, Bert Arnrich, Udo Hahn, Matthieu-P. Schapranow
2022	—	`conf`	HPI-DHC @ BioASQ DisTEMIST: Spanish Biomedical Entity Linking with Pre-trained Transformers and Cross-lingual Candidate Retrieval. CLEF (Working Notes) Florian Borchert, Matthieu-P. Schapranow
2021	—	`conf`	A Comparison of Concept Embeddings for German Clinical Corpora. BIBM Aadil Rasheed, Florian Borchert, Lasse Kohlmeyer, Richard Henkenjohann, Matthieu-P. Schapranow
2021	—	`conf`	An Engineering Approach Towards Multi-site Virtual Molecular Tumor Board Software. IHAW Richard Henkenjohann, Benjamin Bergner, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils, Matthieu-P. Schapranow
2021	Misc	`conf`	Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence. AMIA Florian Borchert, Laura Meister, Thomas Langer, Markus Follmann, Bert Arnrich, Matthieu-P. Schapranow
2021	J	`jnl`	Knowledge bases and software support for variant interpretation in precision oncology. Briefings Bioinform. Florian Borchert, Andreas Mock, Aurelie Tomczak, Jonas Hügel, Samer Alkarkoukly, Alexander Knurr, Anna-Lena Volckmar, Albrecht Stenzinger, Peter Schirmacher, Jürgen Debus, Dirk Jäger, Thomas Longerich, Stefan Fröhling, Roland Eils, Nina Bougatf, Ulrich Sax, Matthieu-P. Schapranow
2021	J	`jnl`	Knowledge bases and software support for variant interpretation in precision oncology. Briefings Bioinform. Florian Borchert, Andreas Mock, Aurelie Tomczak, Jonas Hügel, Samer Alkarkoukly, Alexander Knurr, Anna-Lena Volckmar, Albrecht Stenzinger, Peter Schirmacher, Jürgen Debus, Dirk Jäger, Thomas Longerich, Stefan Fröhling, Roland Eils, Nina Bougatf, Ulrich Sax, Matthieu-P. Schapranow
2020	—	`conf`	GGPONC: A Corpus of German Medical Text with Rich Metadata Based on Clinical Practice Guidelines. LOUHI@EMNLP Florian Borchert, Christina Lohr, Luise Modersohn, Thomas Langer, Markus Follmann, Jan-Philipp Sachs, Udo Hahn, Matthieu-P. Schapranow
2020	J	`jnl`	GGPONC: A Corpus of German Medical Text with Rich Metadata Based on Clinical Practice Guidelines. CoRR Florian Borchert, Christina Lohr, Luise Modersohn, Thomas Langer, Markus Follmann, Jan-Philipp Sachs, Udo Hahn, Matthieu-P. Schapranow