Florencio Pazos

41 papers B 1Journal 37Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
A review on Gene Ontology evaluations.
Database J. Biol. Databases Curation
Borja Pitarch, Monica Chagoyen, Juan A. G. Ranea, Florencio Pazos
2024 J jnl
CoMentG: comprehensive retrieval of generic relationships between biomedical concepts from the scientific literature.
Database J. Biol. Databases Curation
Jorge Novoa, Javier López-Ibáñez, Monica Chagoyen, Juan Antonio Garcia-Ranea, Florencio Pazos
2024 J jnl
Differential expression and co-expression reveal cell types relevant to genetic disorder phenotypes.
Bioinform.
Sergio Alías-Segura, Florencio Pazos, Monica Chagoyen
2023 J jnl
MBROLE3: improved functional enrichment of chemical compounds for metabolomics data analysis.
Nucleic Acids Res.
Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen
2021 J jnl
Predicting biological pathways of chemical compounds with a profile-inspired approach.
BMC Bioinform.
Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen
2021 J jnl
Protein residues determining interaction specificity in paralogous families.
Bioinform.
Borja Pitarch, Juan A. G. Ranea, Florencio Pazos
2019 J jnl
Bacterial Feature Finder (BaFF) - a system for extracting features overrepresented in sets of prokaryotic organisms.
Bioinform.
Javier López-Ibáñez, Laura T. Martín, Monica Chagoyen, Florencio Pazos
2019 J jnl
Characteristics and evolution of the ecosystem of software tools supporting research in molecular biology.
Briefings Bioinform.
Florencio Pazos, Monica Chagoyen
2018 J jnl
Effect of the sequence data deluge on the performance of methods for detecting protein functional residues.
BMC Bioinform.
Diego Garrido-Martín, Florencio Pazos
2017 J jnl
Factors affecting interactome-based prediction of human genes associated with clinical signs.
BMC Bioinform.
Sara González-Pérez, Florencio Pazos, Monica Chagoyen
2016 J jnl
Breaking-Cas - interactive design of guide RNAs for CRISPR-Cas experiments for ENSEMBL genomes.
Nucleic Acids Res.
Juan C. Oliveros, Mònica Franch, Daniel Tabas-Madrid, David San-León, Lluis Montoliu, Pilar Cubas, Florencio Pazos
2016 J jnl
Characterization of clinical signs in the human interactome.
Bioinform.
Monica Chagoyen, Florencio Pazos
2016 J jnl
MBROLE 2.0 - functional enrichment of chemical compounds.
Nucleic Acids Res.
Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen
2016 J jnl
Practical analysis of specificity-determining residues in protein families.
Briefings Bioinform.
Monica Chagoyen, Juan A. García-Martín, Florencio Pazos
2015 J jnl
Detection of significant protein coevolution.
Bioinform.
David Ochoa, David de Juan, Alfonso Valencia, Florencio Pazos
2013 J jnl
COPRED: prediction of fold, GO molecular function and functional residues at the domain level.
Bioinform.
Daniel Lopez, Florencio Pazos
2013 J jnl
Concomitant prediction of function and fold at the domain level with GO-based profiles.
BMC Bioinform.
Daniel Lopez, Florencio Pazos
2013 J jnl
Tools for the functional interpretation of metabolomic experiments.
Briefings Bioinform.
Monica Chagoyen, Florencio Pazos
2012 J jnl
Computational Prediction of Important Regions in Protein Sequences [Life Sciences].
IEEE Signal Process. Mag.
Natalia Pietrosemoli, Daniel Lopez, Aldo Segura-Cabrera, Florencio Pazos
2012 J jnl
JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures.
Bioinform.
Thilo Muth, Juan A. García-Martín, Antonio Rausell, David de Juan, Alfonso Valencia, Florencio Pazos
2011 J jnl
MBRole: enrichment analysis of metabolomic data.
Bioinform.
Monica Chagoyen, Florencio Pazos
2011 J jnl
Selection of organisms for the co-evolution-based study of protein interactions.
BMC Bioinform.
Dorota Herman, David Ochoa, David de Juan, Daniel Lopez, Alfonso Valencia, Florencio Pazos
2010 J jnl
Quantifying the biological significance of gene ontology biological processes - implications for the analysis of systems-wide data.
Bioinform.
Monica Chagoyen, Florencio Pazos
2010 J jnl
Quantitative global studies of reactomes and metabolomes using a vectorial representation of reactions and chemical compounds.
BMC Syst. Biol.
Juan C. Triviño, Florencio Pazos
2010 J jnl
Studying the co-evolution of protein families with the Mirrortree web server.
Bioinform.
David Ochoa, Florencio Pazos
2008 — ch.
Computational Methods to Predict Protein Interaction Partners.
Protein-protein Interactions and Networks
Alfonso Valencia, Florencio Pazos
2008 J jnl
Defining functional distances over Gene Ontology.
BMC Bioinform.
Angela del Pozo, Florencio Pazos, Alfonso Valencia
2008 J jnl
Enhancing the prediction of protein pairings between interacting families using orthology information.
BMC Bioinform.
José M. G. Izarzugaza, David de Juan, Carles Pons, Florencio Pazos, Alfonso Valencia
2006 J jnl
Phylogeny-independent detection of functional residues.
Bioinform.
Florencio Pazos, Antonio Rausell, Alfonso Valencia
2006 J jnl
TSEMA: interactive prediction of protein pairings between interacting families.
Nucleic Acids Res.
José M. G. Izarzugaza, David de Juan, Carles Pons, Juan A. G. Ranea, Alfonso Valencia, Florencio Pazos
2006 J jnl
TreeDet: a web server to explore sequence space.
Nucleic Acids Res.
Angel Carro, Michael L. Tress, David de Juan, Florencio Pazos, Pedro Lopez-Romero, Antonio del Sol, Alfonso Valencia, Ana María Rojas
2005 J jnl
Accessible Protein Interaction Data for Network Modeling. Structure of the Information and Available Repositories.
Trans. Comp. Sys. Biology
Manuel J. Gómez, Ramón Alonso-Allende, Florencio Pazos, Osvaldo Graña, David de Juan, Alfonso Valencia
2005 J jnl
EVAcon: a protein contact prediction evaluation service.
Nucleic Acids Res.
Osvaldo Graña, Volker A. Eyrich, Florencio Pazos, Burkhard Rost, Alfonso Valencia
2005 J jnl
MetaRouter: bioinformatics for bioremediation.
Nucleic Acids Res.
Florencio Pazos, David Guijas, Alfonso Valencia, Victor de Lorenzo
2004 B conf
Modelling Inhibition in Metabolic Pathways Through Abduction and Induction.
ILP
Alireza Tamaddoni-Nezhad, Antonis C. Kakas, Stephen H. Muggleton, Florencio Pazos
2004 — conf
The Biodegradation Network, a New Scenario for Computational Systems Biology Research.
CMSB
Florencio Pazos, David Guijas, Manuel J. Gómez, Almudena Trigo, Victor de Lorenzo, Alfonso Valencia
2003 J jnl
EVA: evaluation of protein structure prediction servers.
Nucleic Acids Res.
Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost
2001 J jnl
EVA: continuous automatic evaluation of protein structure prediction servers.
Bioinform.
Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost
1999 J jnl
A platform for integrating threading results with protein family analyses.
Bioinform.
Florencio Pazos, Burkhard Rost, Alfonso Valencia
1997 J jnl
A graphical interface for correlated mutations and other protein structure prediction methods.
Comput. Appl. Biosci.
Florencio Pazos, O. Olmea, Alfonso Valencia
1997 — conf
Comparative Analysis of Different Methods for the Detection of Specificity Regions in Protein Families.
BCEC
Florencio Pazos, Luis Sánchez-Pulido, Juan Antonio Garcia-Ranca, Miguel A. Andrade, Silvia Atrian, Alfonso Valencia