Flavio Mignone

17 papers B 1Journal 15Unranked 1
YearRankTypeTitle / Venue / Authors
2025 — conf
Graph Representation Learning for IBD Diagnosis Based on Microbiome Metaomic Data.
AIME (1)
Christopher Irwin, Flavio Mignone, Stefania Montani, Luigi Portinale
2024 J jnl
Graph Neural Networks for Gut Microbiome Metaomic data: A preliminary work.
CoRR
Christopher Irwin, Flavio Mignone, Stefania Montani, Luigi Portinale
2018 J jnl
STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow.
BMC Bioinform.
Igor Saggese, Elisa Bona, Maxwell Conway, Francesco Favero, Marco Ladetto, Pietro Liò, Giovanni Manzini, Flavio Mignone
2013 J jnl
NGS-Trex: Next Generation Sequencing Transcriptome profile explorer.
BMC Bioinform.
Ilenia Boria, Lara Boatti, Graziano Pesole, Flavio Mignone
2011 J jnl
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing.
Nucleic Acids Res.
Pier Luigi Martelli, Mattia D'Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna Maria D'Erchia, Paolo D'Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole
2010 J jnl
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.
Nucleic Acids Res.
Giorgio Grillo, Antonio Turi, Flavio Licciulli, Flavio Mignone, Sabino Liuni, Sandro Banfi, Vincenzo Alessandro Gennarino, David Stephen Horner, Giulio Pavesi, Ernesto Picardi, Graziano Pesole
2009 J jnl
EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data.
BMC Bioinform.
Ernesto Picardi, Flavio Mignone, Graziano Pesole
2009 J jnl
Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements.
BMC Bioinform.
Teresa Maria Creanza, David Stephen Horner, Annarita D'Addabbo, Rosalia Maglietta, Flavio Mignone, Nicola Ancona, Graziano Pesole
2008 J jnl
ASPicDB: A database resource for alternative splicing analysis.
Bioinform.
Tiziana Castrignanò, Mattia D'Antonio, Anna Anselmo, Danilo Carrabino, A. D'Onorio De Meo, Anna Maria D'Erchia, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Alberto Riva, Raffaella Rizzi, Paola Bonizzoni, Graziano Pesole
2008 B conf
HT-RLS: High-Throughput Web Tool for Analysis of DNA Microarray Data Using RLS classifiers.
CCGRID
Paolo D'Onorio De Meo, Danilo Carrabino, Mattia D'Antonio, Annarita D'Addabbo, Sabino Liuni, Flavio Mignone, Graziano Pesole, Nicola Ancona
2007 J jnl
A high performance grid-web service framework for the identification of 'conserved sequence tags'.
Future Gener. Comput. Syst.
Paolo D'Onorio De Meo, Danilo Carrabino, Nico Sanna, Tiziana Castrignanò, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Matteo Re, Flavio Mignone, Graziano Pesole
2006 J jnl
GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.
Bioinform.
Tiziana Castrignanò, Paolo D'Onorio De Meo, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Ivano Giuseppe Talamo, Graziano Pesole
2005 J jnl
DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes.
Nucleic Acids Res.
Angelo Boccia, Mauro Petrillo, Diego di Bernardo, Alessandro Guffanti, Flavio Mignone, Stefano Confalonieri, Lucilla Luzi, Graziano Pesole, Giovanni Paolella, Andrea Ballabio, Sandro Banfi
2005 J jnl
UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.
Nucleic Acids Res.
Flavio Mignone, Giorgio Grillo, Flavio Licciulli, Michele Iacono, Sabino Liuni, Paul J. Kersey, Jorge Duarte, Cecilia Saccone, Graziano Pesole
2004 J jnl
CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison.
Nucleic Acids Res.
Tiziana Castrignanò, Alessandro Canali, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Graziano Pesole
2004 J jnl
WebVar: a resource for the rapid estimation of relative site variability from multiple sequence alignments.
Bioinform.
Flavio Mignone, David Stephen Horner, Graziano Pesole
2002 J jnl
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002.
Nucleic Acids Res.
Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Flavio Mignone, Carmela Gissi, Cecilia Saccone